Wall clock time and date at job start Mon Mar 30 2020 04:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99987 * 2 1 4 4 H 1.48499 * 109.47441 * 240.00400 * 3 2 1 5 5 H 1.48505 * 109.46790 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46958 * 119.99986 * 3 2 1 7 7 C 1.37883 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99662 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.46785 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99778 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46728 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47150 * 65.00694 * 12 11 10 14 14 C 1.46904 * 111.00309 * 179.97438 * 13 12 11 15 15 C 1.52462 * 108.78774 * 276.64534 * 14 13 12 16 16 C 1.54792 * 108.73713 * 174.61573 * 15 14 13 17 17 H 1.09008 * 114.44481 * 196.97473 * 16 15 14 18 18 C 1.54972 * 106.18237 * 324.11610 * 16 15 14 19 19 C 1.52446 * 111.71987 * 80.58138 * 18 16 15 20 20 C 1.54973 * 111.72170 * 0.02562 * 19 18 16 21 21 H 1.08999 * 114.36619 * 152.81150 * 20 19 18 22 22 C 1.52452 * 108.79625 * 153.34788 * 14 13 12 23 23 S 1.84398 * 102.42435 * 28.49343 * 20 19 18 24 24 H 0.97001 * 120.00525 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47198 * 60.00162 * 9 7 2 26 26 H 1.08997 * 109.47040 * 300.00196 * 9 7 2 27 27 H 1.09000 * 109.47187 * 300.00233 * 11 10 9 28 28 H 1.09001 * 109.46558 * 60.00281 * 11 10 9 29 29 H 1.09000 * 109.46738 * 185.00163 * 12 11 10 30 30 H 1.08994 * 109.47465 * 305.00250 * 12 11 10 31 31 H 1.00901 * 110.99808 * 303.94335 * 13 12 11 32 32 H 1.09000 * 108.75817 * 34.99108 * 14 13 12 33 33 H 1.08999 * 109.50119 * 295.62300 * 15 14 13 34 34 H 1.08998 * 109.50578 * 55.74105 * 15 14 13 35 35 H 1.09000 * 109.03566 * 319.98815 * 18 16 15 36 36 H 1.08998 * 108.94742 * 201.12029 * 18 16 15 37 37 H 1.09001 * 109.04385 * 239.40637 * 19 18 16 38 38 H 1.09001 * 108.94172 * 120.53196 * 19 18 16 39 39 H 1.09006 * 109.50592 * 304.26101 * 22 14 13 40 40 H 1.09005 * 109.50476 * 64.36874 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6483 -5.9561 -0.0006 13 7 3.4091 -5.8876 1.2540 14 6 4.4600 -6.9135 1.2892 15 6 3.8467 -8.2288 1.7564 16 6 4.9211 -9.3393 1.6630 17 1 4.5244 -10.3542 1.6909 18 6 5.7665 -9.0176 0.4047 19 6 6.8091 -7.9414 0.6855 20 6 6.7486 -7.4538 2.1553 21 1 7.6936 -7.0721 2.5418 22 6 5.5872 -6.4312 2.1953 23 16 6.1089 -8.9397 3.0402 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 0.9453 -4.9822 0.8903 28 1 0.9448 -4.9826 -0.8898 29 1 2.1822 -6.9374 -0.0898 30 1 3.3212 -5.7956 -0.8429 31 1 3.7979 -4.9667 1.3914 32 1 4.8527 -7.0477 0.2813 33 1 3.4930 -8.1215 2.7818 34 1 3.0107 -8.4912 1.1080 35 1 5.1046 -8.6728 -0.3897 36 1 6.2722 -9.9256 0.0765 37 1 6.6337 -7.0945 0.0221 38 1 7.8005 -8.3487 0.4869 39 1 5.9439 -5.4615 1.8478 40 1 5.2187 -6.3390 3.2170 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403535719.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:48 Heat of formation + Delta-G solvation = -47.796161 kcal Electronic energy + Delta-G solvation = -18997.686852 eV Core-core repulsion = 16131.207395 eV Total energy + Delta-G solvation = -2866.479457 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.82255 -37.00498 -34.90108 -32.72612 -32.10543 -30.92251 -28.15681 -26.67200 -24.64792 -24.38885 -22.36983 -21.42892 -20.21186 -19.73685 -17.44731 -16.76971 -16.41193 -15.68848 -15.17022 -14.80441 -14.38784 -14.37542 -13.92773 -13.81235 -13.31355 -13.29782 -13.14876 -12.58544 -12.44234 -12.06936 -11.99312 -11.58037 -11.33183 -11.19283 -11.00896 -10.83919 -10.74650 -10.64271 -10.54382 -10.47571 -10.03230 -9.80263 -9.13750 -8.84080 -8.22962 -8.18810 -7.80799 -6.12180 -4.14323 1.70182 2.03741 3.30675 3.33692 3.37086 3.95869 4.21190 4.33187 4.50238 4.52357 4.59016 4.82617 4.86223 4.91523 4.96279 5.08567 5.20834 5.24207 5.40857 5.46931 5.55217 5.64011 5.64240 5.66306 5.75579 5.81643 5.83771 6.00925 6.05516 6.16130 6.23146 6.34299 7.09566 7.19921 7.42385 7.61848 7.76847 8.13640 8.55685 8.98204 9.50546 10.99282 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.032826 B = 0.003418 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.778818 B = 8190.310159 C = 8614.293350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.065 0.935 9 C 0.198 3.802 10 O -0.400 6.400 11 C 0.062 3.938 12 C 0.067 3.933 13 N -0.684 5.684 14 C 0.077 3.923 15 C -0.103 4.103 16 C -0.022 4.022 17 H 0.123 0.877 18 C -0.123 4.123 19 C -0.124 4.124 20 C -0.025 4.025 21 H 0.124 0.876 22 C -0.120 4.120 23 S -0.322 6.322 24 H 0.265 0.735 25 H 0.004 0.996 26 H 0.006 0.994 27 H 0.047 0.953 28 H 0.040 0.960 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.357 0.643 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.175 -18.815 1.280 21.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.083 0.917 9 C 0.123 3.877 10 O -0.320 6.320 11 C -0.016 4.016 12 C -0.062 4.062 13 N -0.317 5.317 14 C -0.033 4.033 15 C -0.143 4.143 16 C -0.151 4.151 17 H 0.141 0.859 18 C -0.162 4.162 19 C -0.163 4.163 20 C -0.154 4.154 21 H 0.142 0.858 22 C -0.160 4.160 23 S -0.095 6.095 24 H 0.074 0.926 25 H 0.021 0.979 26 H 0.024 0.976 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.051 0.949 31 H 0.178 0.822 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.021 -19.555 2.741 22.614 hybrid contribution 0.390 1.726 -1.668 2.432 sum 11.412 -17.829 1.073 21.196 Atomic orbital electron populations 1.69949 1.06114 1.27294 1.50361 1.24946 0.94966 0.99416 0.95114 0.86402 0.79330 0.81964 0.78810 1.20058 1.21131 1.19986 1.21007 0.93937 0.89428 1.51082 0.91701 1.20166 0.88687 0.83416 0.95382 1.87778 1.35817 1.13139 1.95237 1.22291 0.94526 0.85273 0.99523 1.21993 0.95916 0.97971 0.90354 1.60433 1.26977 1.08754 1.35578 1.21626 0.90725 0.92497 0.98421 1.22093 0.96420 0.92136 1.03626 1.24864 0.96185 1.01984 0.92068 0.85904 1.22256 0.97154 0.99256 0.97497 1.22303 0.99933 0.98810 0.95249 1.24521 1.00924 0.94538 0.95431 0.85780 1.22301 0.93680 0.97706 1.02270 1.88431 1.51953 1.36928 1.32187 0.92569 0.97851 0.97608 0.93515 0.94219 0.90817 0.94912 0.82232 0.92858 0.89612 0.91109 0.90283 0.91053 0.90258 0.91042 0.90624 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -15.10 9.43 -34.44 -0.32 -15.43 16 8 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.20 5.40 5.69 36.01 0.20 5.61 16 10 O -0.40 -9.39 9.85 -35.23 -0.35 -9.74 16 11 C 0.06 1.13 6.28 37.16 0.23 1.36 16 12 C 0.07 0.97 5.88 -3.83 -0.02 0.94 16 13 N -0.68 -9.66 6.28 -107.32 -0.67 -10.34 16 14 C 0.08 0.85 1.97 -68.27 -0.13 0.72 16 15 C -0.10 -1.06 4.95 -26.06 -0.13 -1.19 16 16 C -0.02 -0.20 4.90 -24.75 -0.12 -0.32 16 17 H 0.12 0.94 8.14 -51.92 -0.42 0.51 16 18 C -0.12 -0.97 5.22 -25.97 -0.14 -1.11 16 19 C -0.12 -1.01 5.22 -25.97 -0.14 -1.15 16 20 C -0.03 -0.23 4.83 -24.75 -0.12 -0.35 16 21 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 22 C -0.12 -1.28 4.68 -26.07 -0.12 -1.40 16 23 S -0.32 -3.53 22.08 -107.50 -2.37 -5.91 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 26 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.90 7.20 -51.93 -0.37 0.53 16 30 H 0.03 0.48 8.04 -51.93 -0.42 0.06 16 31 H 0.36 5.66 7.77 -39.29 -0.31 5.36 16 32 H 0.05 0.57 3.90 -51.93 -0.20 0.37 16 33 H 0.09 1.01 8.03 -51.93 -0.42 0.60 16 34 H 0.07 0.70 7.19 -51.93 -0.37 0.33 16 35 H 0.08 0.61 6.79 -51.93 -0.35 0.26 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.66 6.81 -51.93 -0.35 0.30 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.80 8.01 -51.93 -0.42 0.38 16 40 H 0.09 1.02 8.03 -51.93 -0.42 0.60 16 LS Contribution 319.90 15.07 4.82 4.82 Total: -1.00 -30.66 319.90 -10.32 -40.98 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.56 Total: 0.40 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -0.90 Total: -10.78 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.06 Total: -36.47 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.35 Total: -9.74 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -2.37 Total: -5.91 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.66 -10.32 -40.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403535719.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.814 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds