Wall clock time and date at job start Mon Mar 30 2020 04:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99987 * 2 1 4 4 H 1.48499 * 109.47441 * 240.00400 * 3 2 1 5 5 H 1.48505 * 109.46790 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46958 * 119.99986 * 3 2 1 7 7 C 1.37883 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99662 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.46785 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99778 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46728 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47150 * 65.00694 * 12 11 10 14 14 C 1.46904 * 111.00309 * 179.97438 * 13 12 11 15 15 C 1.52462 * 108.78774 * 276.64534 * 14 13 12 16 16 C 1.54792 * 108.73713 * 174.61573 * 15 14 13 17 17 H 1.09008 * 114.44481 * 196.97473 * 16 15 14 18 18 C 1.54972 * 106.18237 * 324.11610 * 16 15 14 19 19 C 1.52446 * 111.71987 * 80.58138 * 18 16 15 20 20 C 1.54973 * 111.72170 * 0.02562 * 19 18 16 21 21 H 1.08999 * 114.36619 * 152.81150 * 20 19 18 22 22 C 1.52452 * 108.79625 * 153.34788 * 14 13 12 23 23 S 1.84398 * 102.42435 * 28.49343 * 20 19 18 24 24 H 0.97001 * 120.00525 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47198 * 60.00162 * 9 7 2 26 26 H 1.08997 * 109.47040 * 300.00196 * 9 7 2 27 27 H 1.09000 * 109.47187 * 300.00233 * 11 10 9 28 28 H 1.09001 * 109.46558 * 60.00281 * 11 10 9 29 29 H 1.09000 * 109.46738 * 185.00163 * 12 11 10 30 30 H 1.08994 * 109.47465 * 305.00250 * 12 11 10 31 31 H 1.00901 * 110.99808 * 303.94335 * 13 12 11 32 32 H 1.09000 * 108.75817 * 34.99108 * 14 13 12 33 33 H 1.08999 * 109.50119 * 295.62300 * 15 14 13 34 34 H 1.08998 * 109.50578 * 55.74105 * 15 14 13 35 35 H 1.09000 * 109.03566 * 319.98815 * 18 16 15 36 36 H 1.08998 * 108.94742 * 201.12029 * 18 16 15 37 37 H 1.09001 * 109.04385 * 239.40637 * 19 18 16 38 38 H 1.09001 * 108.94172 * 120.53196 * 19 18 16 39 39 H 1.09006 * 109.50592 * 304.26101 * 22 14 13 40 40 H 1.09005 * 109.50476 * 64.36874 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6483 -5.9561 -0.0006 13 7 3.4091 -5.8876 1.2540 14 6 4.4600 -6.9135 1.2892 15 6 3.8467 -8.2288 1.7564 16 6 4.9211 -9.3393 1.6630 17 1 4.5244 -10.3542 1.6909 18 6 5.7665 -9.0176 0.4047 19 6 6.8091 -7.9414 0.6855 20 6 6.7486 -7.4538 2.1553 21 1 7.6936 -7.0721 2.5418 22 6 5.5872 -6.4312 2.1953 23 16 6.1089 -8.9397 3.0402 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 0.9453 -4.9822 0.8903 28 1 0.9448 -4.9826 -0.8898 29 1 2.1822 -6.9374 -0.0898 30 1 3.3212 -5.7956 -0.8429 31 1 3.7979 -4.9667 1.3914 32 1 4.8527 -7.0477 0.2813 33 1 3.4930 -8.1215 2.7818 34 1 3.0107 -8.4912 1.1080 35 1 5.1046 -8.6728 -0.3897 36 1 6.2722 -9.9256 0.0765 37 1 6.6337 -7.0945 0.0221 38 1 7.8005 -8.3487 0.4869 39 1 5.9439 -5.4615 1.8478 40 1 5.2187 -6.3390 3.2170 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403535719.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:48 Heat of formation + Delta-G solvation = -67.291318 kcal Electronic energy + Delta-G solvation = -18998.532225 eV Core-core repulsion = 16131.207395 eV Total energy + Delta-G solvation = -2867.324831 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.66330 -38.70312 -36.10427 -34.84129 -32.88104 -32.00030 -29.73651 -28.35993 -25.42371 -25.33160 -24.50394 -22.73266 -20.95025 -20.58510 -18.65406 -18.22119 -17.74956 -17.30231 -16.69958 -16.33407 -15.87456 -15.51876 -15.03799 -14.67007 -14.59186 -14.40757 -14.07060 -13.91419 -13.51245 -13.26756 -13.14199 -12.98767 -12.73649 -12.67264 -12.52708 -12.27068 -11.97183 -11.93340 -11.62032 -11.39915 -11.29445 -11.26979 -10.86886 -10.60284 -10.23431 -9.31079 -8.67007 -8.32100 -6.44836 0.94131 1.29009 1.40254 1.44902 1.53276 2.34493 3.01381 3.01970 3.21975 3.43129 3.71462 3.80046 3.89026 4.08034 4.10394 4.17843 4.25656 4.27749 4.31886 4.43445 4.59308 4.64184 4.77157 4.82855 4.87919 4.93139 4.94905 4.99537 4.99796 5.04054 5.12433 5.17641 5.20233 5.36999 5.54264 5.95431 6.14364 6.40791 6.52970 6.81086 7.27201 8.80083 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.032826 B = 0.003418 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.778818 B = 8190.310159 C = 8614.293350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.549 4.549 8 H 0.064 0.936 9 C 0.212 3.788 10 O -0.407 6.407 11 C 0.053 3.947 12 C 0.078 3.922 13 N -0.696 5.696 14 C 0.081 3.919 15 C -0.101 4.101 16 C -0.007 4.007 17 H 0.140 0.860 18 C -0.122 4.122 19 C -0.123 4.123 20 C -0.014 4.014 21 H 0.134 0.866 22 C -0.118 4.118 23 S -0.375 6.375 24 H 0.271 0.729 25 H -0.015 1.015 26 H -0.017 1.017 27 H 0.040 0.960 28 H 0.048 0.952 29 H 0.104 0.896 30 H 0.036 0.964 31 H 0.344 0.656 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.483 -19.211 0.340 22.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.586 4.586 8 H 0.082 0.918 9 C 0.137 3.863 10 O -0.327 6.327 11 C -0.024 4.024 12 C -0.051 4.051 13 N -0.328 5.328 14 C -0.028 4.028 15 C -0.140 4.140 16 C -0.136 4.136 17 H 0.157 0.843 18 C -0.161 4.161 19 C -0.162 4.162 20 C -0.143 4.143 21 H 0.152 0.848 22 C -0.158 4.158 23 S -0.148 6.148 24 H 0.080 0.920 25 H 0.003 0.997 26 H 0.001 0.999 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.122 0.878 30 H 0.054 0.946 31 H 0.163 0.837 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.333 -19.992 1.801 23.559 hybrid contribution -0.067 1.765 -1.352 2.225 sum 12.266 -18.226 0.449 21.974 Atomic orbital electron populations 1.70064 1.07838 1.28727 1.50447 1.25972 0.95933 1.03440 0.93902 0.85235 0.78088 0.76692 0.79403 1.18891 1.20124 1.19003 1.21367 0.94151 0.90789 1.52321 0.91806 1.19777 0.88579 0.84674 0.93309 1.87742 1.35468 1.14332 1.95203 1.22615 0.96217 0.83951 0.99609 1.21942 0.94957 0.97566 0.90643 1.60477 1.28227 1.08699 1.35440 1.21691 0.90072 0.91892 0.99178 1.22035 0.97149 0.92236 1.02579 1.24955 0.95083 1.02223 0.91316 0.84257 1.22278 0.97109 0.99855 0.96837 1.22325 1.00872 0.99044 0.93993 1.24568 1.00538 0.93059 0.96111 0.84768 1.22251 0.94200 0.98242 1.01085 1.88639 1.53271 1.38251 1.34614 0.92049 0.99743 0.99922 0.94141 0.93398 0.87845 0.94584 0.83681 0.91599 0.91559 0.90185 0.89535 0.89621 0.90061 0.89823 0.90656 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.19 13.29 21.45 0.28 -55.91 16 2 C 0.01 0.35 5.46 84.66 0.46 0.81 16 3 Si 0.98 44.09 29.54 68.60 2.03 46.11 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.55 -32.52 9.43 25.60 0.24 -32.28 16 8 H 0.06 3.70 7.81 -2.91 -0.02 3.68 16 9 C 0.21 11.91 5.69 71.24 0.41 12.32 16 10 O -0.41 -19.44 9.85 -148.98 -1.47 -20.90 16 11 C 0.05 1.94 6.28 71.98 0.45 2.39 16 12 C 0.08 2.13 5.88 86.30 0.51 2.64 16 13 N -0.70 -19.18 6.28 -493.44 -3.10 -22.28 16 14 C 0.08 1.68 1.97 44.55 0.09 1.77 16 15 C -0.10 -1.91 4.95 31.03 0.15 -1.76 16 16 C -0.01 -0.12 4.90 31.88 0.16 0.04 16 17 H 0.14 1.76 8.14 -2.38 -0.02 1.74 16 18 C -0.12 -1.57 5.22 31.09 0.16 -1.41 16 19 C -0.12 -1.71 5.22 31.09 0.16 -1.55 16 20 C -0.01 -0.24 4.83 31.88 0.15 -0.09 16 21 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 22 C -0.12 -2.45 4.68 31.02 0.15 -2.30 16 23 S -0.37 -7.90 22.08 -56.49 -1.25 -9.15 16 24 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 25 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 26 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 27 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.10 2.24 7.20 -2.39 -0.02 2.22 16 30 H 0.04 0.98 8.04 -2.39 -0.02 0.96 16 31 H 0.34 10.96 7.77 -89.69 -0.70 10.26 16 32 H 0.07 1.25 3.90 -2.39 -0.01 1.24 16 33 H 0.07 1.54 8.03 -2.39 -0.02 1.52 16 34 H 0.08 1.38 7.19 -2.39 -0.02 1.37 16 35 H 0.09 1.03 6.79 -2.39 -0.02 1.01 16 36 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 1.13 6.81 -2.39 -0.02 1.11 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 1.56 8.01 -2.38 -0.02 1.54 16 40 H 0.07 1.65 8.03 -2.38 -0.02 1.63 16 Total: -1.00 -66.26 319.90 -0.09 -66.35 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.32 Total: 15.19 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 3.09 Total: -19.42 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -2.82 Total: -78.19 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -1.47 Total: -20.90 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -1.25 Total: -9.15 kcal Total: -66.26 -0.09 -66.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403535719.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.938 kcal (2) G-P(sol) polarization free energy of solvation -66.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds