Wall clock time and date at job start Mon Mar 30 2020 04:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86802 * 120.00343 * 2 1 4 4 H 1.48509 * 109.47160 * 240.00477 * 3 2 1 5 5 H 1.48501 * 109.46721 * 0.02562 * 3 2 1 6 6 H 1.48490 * 109.47451 * 120.00194 * 3 2 1 7 7 C 1.37885 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99566 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99844 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46545 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99649 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47405 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46769 * 64.99669 * 12 11 10 14 14 C 1.46469 * 110.99857 * 66.04911 * 13 12 11 15 15 C 1.53252 * 109.86094 * 197.76030 * 14 13 12 16 16 S 1.81901 * 108.50552 * 298.00047 * 15 14 13 17 17 C 1.81899 * 101.91463 * 51.30323 * 16 15 14 18 18 C 1.46471 * 110.99981 * 192.02641 * 13 12 11 19 19 H 1.08996 * 109.40731 * 282.35934 * 18 13 12 20 20 C 1.53006 * 109.40239 * 42.11873 * 18 13 12 21 21 C 1.53005 * 117.49516 * 248.61885 * 20 18 13 22 22 C 1.53003 * 117.49623 * 179.97438 * 20 18 13 23 23 H 0.97004 * 120.00403 * 359.97438 * 1 2 3 24 24 H 1.08990 * 109.47088 * 60.00044 * 9 7 2 25 25 H 1.08992 * 109.46694 * 299.99407 * 9 7 2 26 26 H 1.09002 * 109.47445 * 59.99875 * 11 10 9 27 27 H 1.09002 * 109.47167 * 299.99793 * 11 10 9 28 28 H 1.09002 * 109.47398 * 184.99964 * 12 11 10 29 29 H 1.09001 * 109.47194 * 305.00145 * 12 11 10 30 30 H 1.08996 * 109.40978 * 317.88474 * 14 13 12 31 31 H 1.09005 * 109.40689 * 77.72861 * 14 13 12 32 32 H 1.09004 * 109.62452 * 57.70473 * 15 14 13 33 33 H 1.08998 * 109.63369 * 178.09079 * 15 14 13 34 34 H 1.08999 * 109.63215 * 68.40173 * 17 16 15 35 35 H 1.08999 * 109.62969 * 188.99148 * 17 16 15 36 36 H 1.08993 * 115.55383 * 34.33147 * 20 18 13 37 37 H 1.08997 * 117.49969 * 0.02562 * 21 20 18 38 38 H 1.09001 * 117.49649 * 145.02230 * 21 20 18 39 39 H 1.08998 * 117.49828 * 214.97936 * 22 20 18 40 40 H 1.09001 * 117.49640 * 0.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0017 11 6 1.5649 -4.8754 0.0024 12 6 2.6478 -5.9563 0.0030 13 7 3.4079 -5.8871 1.2583 14 6 2.5641 -6.2385 2.4028 15 6 3.2145 -5.7456 3.6999 16 16 4.8156 -6.5859 3.8985 17 6 5.6001 -6.2854 2.2851 18 6 4.6212 -6.7041 1.1829 19 1 4.3593 -7.7543 1.3108 20 6 5.2810 -6.5093 -0.1838 21 6 5.2688 -7.6958 -1.1497 22 6 6.5719 -7.2823 -0.4616 23 1 -0.4851 0.8400 0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 0.9451 -4.9831 -0.8877 27 1 0.9444 -4.9818 0.8922 28 1 2.1818 -6.9376 -0.0860 29 1 3.3214 -5.7962 -0.8388 30 1 1.5857 -5.7721 2.2882 31 1 2.4462 -7.3213 2.4469 32 1 3.3707 -4.6682 3.6448 33 1 2.5677 -5.9790 4.5456 34 1 5.8346 -5.2257 2.1836 35 1 6.5137 -6.8747 2.2068 36 1 5.1907 -5.5108 -0.6115 37 1 4.7903 -8.6150 -0.8117 38 1 5.1701 -7.4781 -2.2132 39 1 7.3301 -6.7926 -1.0726 40 1 6.9507 -7.9299 0.3290 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451645646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:38 Heat of formation + Delta-G solvation = -15.213527 kcal Electronic energy + Delta-G solvation = -19357.947374 eV Core-core repulsion = 16492.880806 eV Total energy + Delta-G solvation = -2865.066568 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.40955 -36.90828 -35.84768 -32.75949 -31.31003 -31.20977 -27.90215 -26.40000 -24.49493 -22.51942 -22.37416 -22.25712 -21.15400 -19.71382 -17.00424 -16.39723 -16.33877 -15.58879 -15.27615 -14.92455 -14.52147 -14.34512 -14.04552 -13.93906 -13.60512 -13.36364 -12.92451 -12.36301 -12.02755 -11.94153 -11.86888 -11.68554 -11.49062 -11.28389 -10.87790 -10.82842 -10.68063 -10.50491 -10.34917 -10.18136 -9.96261 -9.58044 -9.08243 -8.77375 -8.21984 -8.11282 -7.66699 -6.08776 -4.09863 1.82879 2.52370 3.33530 3.36101 3.40192 3.58498 3.78670 4.36609 4.55197 4.70354 4.80031 4.88491 4.96363 5.06503 5.12367 5.24673 5.26615 5.27786 5.38573 5.40016 5.51215 5.58544 5.59734 5.71531 5.78805 5.89380 5.97262 5.97522 6.02977 6.11454 6.18889 6.29728 7.09542 7.15109 7.20060 7.45431 7.82407 8.18928 8.63557 9.04315 9.54959 11.02816 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.018486 B = 0.004715 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.326884 B = 5936.814584 C = 6320.961911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.065 0.935 9 C 0.195 3.805 10 O -0.379 6.379 11 C 0.065 3.935 12 C 0.064 3.936 13 N -0.531 5.531 14 C 0.055 3.945 15 C -0.071 4.071 16 S -0.289 6.289 17 C -0.063 4.063 18 C 0.123 3.877 19 H 0.049 0.951 20 C -0.146 4.146 21 C -0.180 4.180 22 C -0.176 4.176 23 H 0.264 0.736 24 H 0.002 0.998 25 H 0.002 0.998 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.038 0.962 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.041 0.959 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.122 0.878 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.280 -16.725 2.112 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.298 6.298 11 C -0.014 4.014 12 C -0.063 4.063 13 N -0.256 5.256 14 C -0.074 4.074 15 C -0.219 4.219 16 S -0.062 6.062 17 C -0.212 4.212 18 C 0.013 3.987 19 H 0.067 0.933 20 C -0.166 4.166 21 C -0.217 4.217 22 C -0.213 4.213 23 H 0.073 0.927 24 H 0.019 0.981 25 H 0.020 0.980 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.059 0.941 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.140 0.860 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.863 -16.648 3.122 19.117 hybrid contribution -0.738 0.766 -1.077 1.514 sum 8.125 -15.882 2.045 17.956 Atomic orbital electron populations 1.69949 1.06099 1.27176 1.50726 1.24935 0.94941 0.99361 0.95228 0.86421 0.79334 0.82031 0.78840 1.20054 1.21195 1.20021 1.21011 0.93995 0.89359 1.50571 0.91647 1.20157 0.88833 0.83901 0.95040 1.87943 1.34620 1.12279 1.94999 1.22319 0.93884 0.86402 0.98757 1.22167 0.96114 0.95980 0.92085 1.61015 1.06239 1.55120 1.03209 1.22268 0.97335 0.98390 0.89403 1.23512 0.94432 1.03763 1.00222 1.86706 1.21210 1.74157 1.24104 1.23521 0.99677 1.06056 0.91923 1.21272 0.90112 0.94770 0.92529 0.93319 1.22390 1.00547 0.98014 0.95640 1.23059 1.01445 0.98685 0.98510 1.22965 0.91287 1.03705 1.03392 0.92674 0.98068 0.98010 0.94262 0.94671 0.94379 0.89036 0.88936 0.94063 0.88289 0.87756 0.88545 0.87906 0.85993 0.89080 0.88586 0.88537 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.28 55.43 0.74 -26.29 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 22.00 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.51 -15.11 9.43 -34.44 -0.32 -15.43 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.20 5.35 5.69 36.01 0.20 5.55 16 10 O -0.38 -9.03 10.27 -35.23 -0.36 -9.39 16 11 C 0.06 1.17 6.02 37.16 0.22 1.39 16 12 C 0.06 0.92 5.02 -3.82 -0.02 0.91 16 13 N -0.53 -7.67 4.26 -227.03 -0.97 -8.64 16 14 C 0.06 0.73 5.29 -3.93 -0.02 0.71 16 15 C -0.07 -0.93 6.69 37.29 0.25 -0.68 16 16 S -0.29 -3.79 22.40 -107.50 -2.41 -6.20 16 17 C -0.06 -0.77 5.82 37.28 0.22 -0.55 16 18 C 0.12 1.50 2.12 -67.82 -0.14 1.36 16 19 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 20 C -0.15 -1.65 3.44 -90.61 -0.31 -1.96 16 21 C -0.18 -1.69 10.09 -26.70 -0.27 -1.96 16 22 C -0.18 -1.60 9.71 -26.70 -0.26 -1.86 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 24 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 25 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.62 6.09 -51.93 -0.32 0.30 16 28 H 0.04 0.48 8.12 -51.93 -0.42 0.05 16 29 H 0.09 1.34 5.64 -51.93 -0.29 1.05 16 30 H 0.09 1.28 5.82 -51.93 -0.30 0.98 16 31 H 0.04 0.50 7.91 -51.93 -0.41 0.09 16 32 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.10 1.07 7.21 -51.93 -0.37 0.69 16 36 H 0.12 1.65 7.40 -51.93 -0.38 1.26 16 37 H 0.09 0.81 8.04 -51.93 -0.42 0.39 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.77 7.57 -51.93 -0.39 0.38 16 LS Contribution 328.58 15.07 4.95 4.95 Total: -1.00 -30.95 328.58 -10.26 -41.21 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.64 Total: -1.63 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -0.55 Total: -10.99 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: -0.23 Total: -34.93 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.36 Total: -9.39 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: -3.79 SS G_CDS: -2.41 Total: -6.20 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.95 -10.26 -41.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451645646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.994 kcal (2) G-P(sol) polarization free energy of solvation -30.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds