Wall clock time and date at job start Mon Mar 30 2020 04:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86802 * 120.00343 * 2 1 4 4 H 1.48509 * 109.47160 * 240.00477 * 3 2 1 5 5 H 1.48501 * 109.46721 * 0.02562 * 3 2 1 6 6 H 1.48490 * 109.47451 * 120.00194 * 3 2 1 7 7 C 1.37885 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99566 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99844 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46545 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99649 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47405 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46769 * 64.99669 * 12 11 10 14 14 C 1.46469 * 110.99857 * 66.04911 * 13 12 11 15 15 C 1.53252 * 109.86094 * 197.76030 * 14 13 12 16 16 S 1.81901 * 108.50552 * 298.00047 * 15 14 13 17 17 C 1.81899 * 101.91463 * 51.30323 * 16 15 14 18 18 C 1.46471 * 110.99981 * 192.02641 * 13 12 11 19 19 H 1.08996 * 109.40731 * 282.35934 * 18 13 12 20 20 C 1.53006 * 109.40239 * 42.11873 * 18 13 12 21 21 C 1.53005 * 117.49516 * 248.61885 * 20 18 13 22 22 C 1.53003 * 117.49623 * 179.97438 * 20 18 13 23 23 H 0.97004 * 120.00403 * 359.97438 * 1 2 3 24 24 H 1.08990 * 109.47088 * 60.00044 * 9 7 2 25 25 H 1.08992 * 109.46694 * 299.99407 * 9 7 2 26 26 H 1.09002 * 109.47445 * 59.99875 * 11 10 9 27 27 H 1.09002 * 109.47167 * 299.99793 * 11 10 9 28 28 H 1.09002 * 109.47398 * 184.99964 * 12 11 10 29 29 H 1.09001 * 109.47194 * 305.00145 * 12 11 10 30 30 H 1.08996 * 109.40978 * 317.88474 * 14 13 12 31 31 H 1.09005 * 109.40689 * 77.72861 * 14 13 12 32 32 H 1.09004 * 109.62452 * 57.70473 * 15 14 13 33 33 H 1.08998 * 109.63369 * 178.09079 * 15 14 13 34 34 H 1.08999 * 109.63215 * 68.40173 * 17 16 15 35 35 H 1.08999 * 109.62969 * 188.99148 * 17 16 15 36 36 H 1.08993 * 115.55383 * 34.33147 * 20 18 13 37 37 H 1.08997 * 117.49969 * 0.02562 * 21 20 18 38 38 H 1.09001 * 117.49649 * 145.02230 * 21 20 18 39 39 H 1.08998 * 117.49828 * 214.97936 * 22 20 18 40 40 H 1.09001 * 117.49640 * 0.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0017 11 6 1.5649 -4.8754 0.0024 12 6 2.6478 -5.9563 0.0030 13 7 3.4079 -5.8871 1.2583 14 6 2.5641 -6.2385 2.4028 15 6 3.2145 -5.7456 3.6999 16 16 4.8156 -6.5859 3.8985 17 6 5.6001 -6.2854 2.2851 18 6 4.6212 -6.7041 1.1829 19 1 4.3593 -7.7543 1.3108 20 6 5.2810 -6.5093 -0.1838 21 6 5.2688 -7.6958 -1.1497 22 6 6.5719 -7.2823 -0.4616 23 1 -0.4851 0.8400 0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 0.9451 -4.9831 -0.8877 27 1 0.9444 -4.9818 0.8922 28 1 2.1818 -6.9376 -0.0860 29 1 3.3214 -5.7962 -0.8388 30 1 1.5857 -5.7721 2.2882 31 1 2.4462 -7.3213 2.4469 32 1 3.3707 -4.6682 3.6448 33 1 2.5677 -5.9790 4.5456 34 1 5.8346 -5.2257 2.1836 35 1 6.5137 -6.8747 2.2068 36 1 5.1907 -5.5108 -0.6115 37 1 4.7903 -8.6150 -0.8117 38 1 5.1701 -7.4781 -2.2132 39 1 7.3301 -6.7926 -1.0726 40 1 6.9507 -7.9299 0.3290 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451645646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:37 Heat of formation + Delta-G solvation = -34.153632 kcal Electronic energy + Delta-G solvation = -19358.768679 eV Core-core repulsion = 16492.880806 eV Total energy + Delta-G solvation = -2865.887873 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.43914 -38.44987 -37.04028 -34.92434 -32.59039 -32.21310 -29.67332 -28.08351 -25.46749 -24.48117 -23.58900 -23.14639 -22.29526 -20.71255 -18.60973 -18.05847 -17.47833 -17.24894 -16.58587 -16.37539 -16.01890 -15.55707 -15.21339 -15.15226 -14.79192 -14.61633 -14.46543 -13.60329 -13.48745 -13.41785 -13.03570 -12.81908 -12.77123 -12.71405 -12.54259 -12.32541 -12.24050 -11.94777 -11.52361 -11.28936 -11.20926 -11.10310 -10.82615 -10.56932 -10.15481 -9.27836 -8.71821 -8.31535 -6.43192 0.81107 1.38994 1.43503 1.49607 1.51865 2.34625 2.64132 2.90571 3.02259 3.24262 3.65396 3.82645 3.90534 4.04087 4.11269 4.14622 4.15457 4.24186 4.34691 4.43751 4.44148 4.48262 4.54178 4.64569 4.77507 4.80449 4.85382 4.86214 5.00115 5.02445 5.05730 5.20304 5.27302 5.29591 5.55514 5.97604 6.02989 6.16889 6.57672 6.87197 7.29042 8.80515 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.018486 B = 0.004715 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.326884 B = 5936.814584 C = 6320.961911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.979 3.021 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.211 3.789 10 O -0.393 6.393 11 C 0.055 3.945 12 C 0.075 3.925 13 N -0.556 5.556 14 C 0.058 3.942 15 C -0.069 4.069 16 S -0.294 6.294 17 C -0.059 4.059 18 C 0.131 3.869 19 H 0.059 0.941 20 C -0.164 4.164 21 C -0.169 4.169 22 C -0.162 4.162 23 H 0.270 0.730 24 H -0.017 1.017 25 H -0.019 1.019 26 H 0.046 0.954 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.455 -17.644 1.998 20.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.190 4.190 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.077 0.923 9 C 0.136 3.864 10 O -0.312 6.312 11 C -0.023 4.023 12 C -0.051 4.051 13 N -0.282 5.282 14 C -0.071 4.071 15 C -0.218 4.218 16 S -0.067 6.067 17 C -0.207 4.207 18 C 0.021 3.979 19 H 0.077 0.923 20 C -0.184 4.184 21 C -0.207 4.207 22 C -0.200 4.200 23 H 0.079 0.921 24 H 0.001 0.999 25 H -0.001 1.001 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.140 0.860 34 H 0.094 0.906 35 H 0.143 0.857 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.042 -17.594 3.007 20.480 hybrid contribution -1.117 0.981 -1.036 1.812 sum 8.924 -16.613 1.971 18.961 Atomic orbital electron populations 1.70054 1.07696 1.28614 1.50622 1.25912 0.95913 1.03221 0.93991 0.85293 0.78167 0.77005 0.79312 1.19001 1.19889 1.19244 1.21331 0.93926 0.90949 1.52042 0.92344 1.19747 0.88619 0.84981 0.93040 1.87902 1.34538 1.13745 1.95029 1.22676 0.95565 0.84738 0.99276 1.22031 0.95149 0.95622 0.92343 1.60947 1.07197 1.56696 1.03321 1.22245 0.96632 0.99230 0.89035 1.23483 0.95092 1.02118 1.01084 1.86688 1.21188 1.73740 1.25058 1.23559 1.00563 1.05192 0.91435 1.21236 0.89028 0.94680 0.92933 0.92318 1.22197 1.03054 0.97488 0.95711 1.23123 1.01382 0.97835 0.98319 1.23050 0.90788 1.02696 1.03420 0.92095 0.99946 1.00110 0.93566 0.94272 0.91428 0.89195 0.89975 0.92326 0.90917 0.85951 0.90571 0.85737 0.88787 0.88019 0.88241 0.87981 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.43 13.28 21.45 0.28 -56.15 16 2 C 0.01 0.47 5.46 84.66 0.46 0.93 16 3 Si 0.98 44.98 29.54 68.60 2.03 47.01 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.54 -32.96 9.43 25.60 0.24 -32.72 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.50 16 9 C 0.21 12.02 5.69 71.24 0.41 12.43 16 10 O -0.39 -19.27 10.27 -148.98 -1.53 -20.81 16 11 C 0.05 2.00 6.02 71.98 0.43 2.43 16 12 C 0.08 2.13 5.02 86.30 0.43 2.56 16 13 N -0.56 -15.76 4.26 -872.19 -3.72 -19.47 16 14 C 0.06 1.49 5.29 86.47 0.46 1.94 16 15 C -0.07 -1.80 6.69 72.07 0.48 -1.31 16 16 S -0.29 -7.39 22.40 -56.49 -1.27 -8.66 16 17 C -0.06 -1.37 5.82 72.06 0.42 -0.95 16 18 C 0.13 3.00 2.12 45.08 0.10 3.10 16 19 H 0.06 1.26 7.66 -2.39 -0.02 1.24 16 20 C -0.16 -3.50 3.44 -10.79 -0.04 -3.54 16 21 C -0.17 -2.78 10.09 30.61 0.31 -2.48 16 22 C -0.16 -2.57 9.71 30.61 0.30 -2.27 16 23 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 24 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 25 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 26 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.04 1.40 6.09 -2.39 -0.01 1.39 16 28 H 0.07 1.53 8.12 -2.39 -0.02 1.51 16 29 H 0.09 2.59 5.64 -2.39 -0.01 2.57 16 30 H 0.08 2.27 5.82 -2.39 -0.01 2.25 16 31 H 0.06 1.31 7.91 -2.38 -0.02 1.29 16 32 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.12 2.32 7.21 -2.39 -0.02 2.30 16 36 H 0.09 2.57 7.40 -2.39 -0.02 2.55 16 37 H 0.10 1.48 8.04 -2.39 -0.02 1.46 16 38 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.10 1.51 8.14 -2.39 -0.02 1.50 16 40 H 0.11 1.42 7.57 -2.39 -0.02 1.40 16 Total: -1.00 -66.91 328.58 0.80 -66.11 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 1.00 Total: 11.84 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 4.00 Total: -19.87 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: -3.43 Total: -75.62 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -1.53 Total: -20.81 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 16 Polarization: -7.39 SS G_CDS: -1.27 Total: -8.66 kcal Total: -66.91 0.80 -66.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451645646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.956 kcal (2) G-P(sol) polarization free energy of solvation -66.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds