Wall clock time and date at job start Mon Mar 30 2020 04:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99774 * 2 1 4 4 H 1.48507 * 109.47028 * 239.99838 * 3 2 1 5 5 H 1.48495 * 109.47444 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47136 * 119.99911 * 3 2 1 7 7 C 1.37874 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00354 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99466 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.46762 * 179.97438 * 9 7 2 11 11 C 1.42902 * 113.99920 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.46947 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.47378 * 68.28394 * 12 11 10 14 14 C 1.46473 * 110.99736 * 287.48386 * 13 12 11 15 15 C 1.53254 * 109.85887 * 162.23132 * 14 13 12 16 16 S 1.81894 * 108.50331 * 62.00466 * 15 14 13 17 17 C 1.81905 * 101.91543 * 308.69296 * 16 15 14 18 18 C 1.46464 * 111.00399 * 161.50399 * 13 12 11 19 19 H 1.09002 * 109.40521 * 77.72791 * 18 13 12 20 20 C 1.52994 * 109.40487 * 317.88739 * 18 13 12 21 21 C 1.53001 * 117.50156 * 111.25291 * 20 18 13 22 22 C 1.53002 * 117.49855 * 179.91545 * 20 18 13 23 23 H 0.97002 * 119.99712 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47523 * 59.99837 * 9 7 2 25 25 H 1.08994 * 109.47033 * 299.99120 * 9 7 2 26 26 H 1.08998 * 109.46981 * 60.00243 * 11 10 9 27 27 H 1.08992 * 109.47064 * 299.99956 * 11 10 9 28 28 H 1.09000 * 109.47536 * 308.28082 * 12 11 10 29 29 H 1.08999 * 109.47420 * 188.28382 * 12 11 10 30 30 H 1.08994 * 109.41059 * 282.35121 * 14 13 12 31 31 H 1.08998 * 109.40650 * 42.11726 * 14 13 12 32 32 H 1.08994 * 109.63064 * 181.71144 * 15 14 13 33 33 H 1.09000 * 109.63035 * 302.30002 * 15 14 13 34 34 H 1.08996 * 109.62944 * 291.60009 * 17 16 15 35 35 H 1.08991 * 109.62902 * 171.01107 * 17 16 15 36 36 H 1.09004 * 115.54987 * 325.57757 * 20 18 13 37 37 H 1.09000 * 117.49811 * 215.00100 * 21 20 18 38 38 H 1.08997 * 117.50131 * 0.02562 * 21 20 18 39 39 H 1.08996 * 117.49974 * 359.96996 * 22 20 18 40 40 H 1.09003 * 117.50146 * 145.00045 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0011 12 6 2.6481 -5.9561 0.0004 13 7 3.3577 -5.9392 1.2866 14 6 4.2285 -4.7660 1.3902 15 6 4.6049 -4.5249 2.8561 16 16 5.5294 -5.9703 3.4599 17 6 4.4313 -7.3420 2.9890 18 6 4.0788 -7.1952 1.5049 19 1 4.9951 -7.1940 0.9146 20 6 3.1975 -8.3689 1.0732 21 6 3.6249 -9.1541 -0.1684 22 6 3.7751 -9.7780 1.2214 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8903 26 1 0.9447 -4.9827 -0.8886 27 1 0.9453 -4.9822 0.8913 28 1 3.3544 -5.7623 -0.8068 29 1 2.1868 -6.9326 -0.1472 30 1 5.1336 -4.9341 0.8068 31 1 3.7060 -3.8917 1.0020 32 1 5.2279 -3.6338 2.9323 33 1 3.7002 -4.3946 3.4498 34 1 3.5210 -7.3041 3.5872 35 1 4.9409 -8.2915 3.1521 36 1 2.1286 -8.2426 1.2455 37 1 2.8372 -9.5443 -0.8130 38 1 4.5342 -8.8348 -0.6776 39 1 4.7831 -9.8687 1.6259 40 1 3.0863 -10.5786 1.4910 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451645647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:42 Heat of formation + Delta-G solvation = -16.694781 kcal Electronic energy + Delta-G solvation = -19387.267118 eV Core-core repulsion = 16522.136318 eV Total energy + Delta-G solvation = -2865.130800 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.40671 -37.06359 -35.72907 -32.80669 -31.30466 -31.08747 -27.89723 -26.45295 -24.42198 -22.56277 -22.45589 -21.87069 -21.37095 -19.78851 -16.94528 -16.45988 -16.32697 -15.54045 -15.29476 -14.88524 -14.67828 -14.29493 -14.02472 -13.87714 -13.55703 -13.28652 -12.85971 -12.41773 -12.00728 -11.88272 -11.85126 -11.55884 -11.42124 -11.22579 -10.87415 -10.79197 -10.74005 -10.64391 -10.38074 -10.33371 -9.97157 -9.48184 -9.11570 -8.80394 -8.23340 -8.14743 -7.59477 -6.13516 -4.15807 1.90474 2.62089 3.30032 3.33416 3.36536 3.53594 3.83546 4.31651 4.51728 4.65953 4.76362 4.83856 5.03401 5.06568 5.21668 5.23179 5.25831 5.35507 5.42380 5.44837 5.52787 5.66516 5.69520 5.74278 5.84869 5.89666 5.98393 6.02424 6.09110 6.19143 6.33913 6.69076 7.08618 7.22095 7.31909 7.41798 7.75121 8.12371 8.52590 8.96693 9.49333 10.97799 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.023994 B = 0.004599 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.656581 B = 6086.361449 C = 6980.457919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.058 3.942 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.065 0.935 9 C 0.196 3.804 10 O -0.394 6.394 11 C 0.065 3.935 12 C 0.062 3.938 13 N -0.539 5.539 14 C 0.039 3.961 15 C -0.063 4.063 16 S -0.299 6.299 17 C -0.061 4.061 18 C 0.116 3.884 19 H 0.051 0.949 20 C -0.146 4.146 21 C -0.179 4.179 22 C -0.176 4.176 23 H 0.265 0.735 24 H 0.004 0.996 25 H 0.006 0.994 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.037 0.963 31 H 0.141 0.859 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.707 -17.431 2.699 18.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.083 0.917 9 C 0.122 3.878 10 O -0.314 6.314 11 C -0.013 4.013 12 C -0.066 4.066 13 N -0.265 5.265 14 C -0.090 4.090 15 C -0.211 4.211 16 S -0.072 6.072 17 C -0.209 4.209 18 C 0.006 3.994 19 H 0.069 0.931 20 C -0.166 4.166 21 C -0.217 4.217 22 C -0.213 4.213 23 H 0.074 0.926 24 H 0.022 0.978 25 H 0.024 0.976 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.055 0.945 31 H 0.158 0.842 32 H 0.124 0.876 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.133 0.867 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.425 -17.237 3.626 19.115 hybrid contribution -0.528 0.827 -1.148 1.510 sum 6.897 -16.410 2.478 17.972 Atomic orbital electron populations 1.69952 1.06108 1.27280 1.50307 1.24932 0.94940 0.99381 0.95088 0.86429 0.79357 0.82054 0.78840 1.20051 1.21158 1.19976 1.20995 0.93879 0.89406 1.51162 0.91701 1.20192 0.88753 0.83483 0.95408 1.87666 1.35500 1.13382 1.94897 1.22306 0.94410 0.85114 0.99433 1.22214 0.96291 0.98754 0.89297 1.61170 1.30338 1.01127 1.33817 1.22775 0.96039 0.96028 0.94108 1.23561 1.02143 0.96091 0.99296 1.86750 1.35163 1.04864 1.80391 1.23454 1.01284 0.98014 0.98189 1.21330 0.94772 0.88904 0.94368 0.93128 1.22347 1.00370 0.91510 1.02393 1.23084 1.03385 1.04244 0.90947 1.22976 1.02407 0.95797 1.00170 0.92584 0.97813 0.97633 0.94075 0.93555 0.94091 0.89397 0.94465 0.84160 0.87596 0.88965 0.89144 0.88113 0.86675 0.88607 0.88851 0.88822 0.88623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.91 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.69 9.43 -34.44 -0.32 -15.02 16 8 H 0.06 1.82 7.81 -52.49 -0.41 1.40 16 9 C 0.20 5.18 5.69 36.01 0.20 5.38 16 10 O -0.39 -8.84 7.24 -35.23 -0.26 -9.09 16 11 C 0.07 1.16 6.21 37.16 0.23 1.39 16 12 C 0.06 0.89 5.26 -3.82 -0.02 0.87 16 13 N -0.54 -7.82 4.26 -227.04 -0.97 -8.79 16 14 C 0.04 0.62 5.24 -3.93 -0.02 0.60 16 15 C -0.06 -0.93 6.69 37.29 0.25 -0.68 16 16 S -0.30 -4.16 22.40 -107.50 -2.41 -6.56 16 17 C -0.06 -0.71 5.83 37.28 0.22 -0.50 16 18 C 0.12 1.40 2.12 -67.83 -0.14 1.25 16 19 H 0.05 0.66 7.67 -51.93 -0.40 0.26 16 20 C -0.15 -1.44 3.41 -90.62 -0.31 -1.75 16 21 C -0.18 -1.55 9.93 -26.69 -0.26 -1.81 16 22 C -0.18 -1.42 9.71 -26.69 -0.26 -1.68 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 25 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.62 8.04 -51.93 -0.42 0.21 16 29 H 0.09 1.07 5.33 -51.93 -0.28 0.79 16 30 H 0.04 0.59 7.91 -51.93 -0.41 0.18 16 31 H 0.14 2.72 4.67 -51.93 -0.24 2.48 16 32 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.10 1.01 7.22 -51.93 -0.37 0.64 16 36 H 0.12 1.19 7.50 -51.93 -0.39 0.80 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.83 8.05 -51.93 -0.42 0.42 16 39 H 0.09 0.73 7.58 -51.93 -0.39 0.33 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 326.39 15.07 4.92 4.92 Total: -1.00 -29.27 326.39 -10.21 -39.48 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -6.67 Total: -0.29 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -0.54 Total: -10.39 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: -0.23 Total: -34.54 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.26 Total: -9.09 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -4.16 SS G_CDS: -2.41 Total: -6.56 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.27 -10.21 -39.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451645647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.785 kcal (2) G-P(sol) polarization free energy of solvation -29.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds