Wall clock time and date at job start Mon Mar 30 2020 04:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99774 * 2 1 4 4 H 1.48507 * 109.47028 * 239.99838 * 3 2 1 5 5 H 1.48495 * 109.47444 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47136 * 119.99911 * 3 2 1 7 7 C 1.37874 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00354 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99466 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.46762 * 179.97438 * 9 7 2 11 11 C 1.42902 * 113.99920 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.46947 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.47378 * 68.28394 * 12 11 10 14 14 C 1.46473 * 110.99736 * 287.48386 * 13 12 11 15 15 C 1.53254 * 109.85887 * 162.23132 * 14 13 12 16 16 S 1.81894 * 108.50331 * 62.00466 * 15 14 13 17 17 C 1.81905 * 101.91543 * 308.69296 * 16 15 14 18 18 C 1.46464 * 111.00399 * 161.50399 * 13 12 11 19 19 H 1.09002 * 109.40521 * 77.72791 * 18 13 12 20 20 C 1.52994 * 109.40487 * 317.88739 * 18 13 12 21 21 C 1.53001 * 117.50156 * 111.25291 * 20 18 13 22 22 C 1.53002 * 117.49855 * 179.91545 * 20 18 13 23 23 H 0.97002 * 119.99712 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47523 * 59.99837 * 9 7 2 25 25 H 1.08994 * 109.47033 * 299.99120 * 9 7 2 26 26 H 1.08998 * 109.46981 * 60.00243 * 11 10 9 27 27 H 1.08992 * 109.47064 * 299.99956 * 11 10 9 28 28 H 1.09000 * 109.47536 * 308.28082 * 12 11 10 29 29 H 1.08999 * 109.47420 * 188.28382 * 12 11 10 30 30 H 1.08994 * 109.41059 * 282.35121 * 14 13 12 31 31 H 1.08998 * 109.40650 * 42.11726 * 14 13 12 32 32 H 1.08994 * 109.63064 * 181.71144 * 15 14 13 33 33 H 1.09000 * 109.63035 * 302.30002 * 15 14 13 34 34 H 1.08996 * 109.62944 * 291.60009 * 17 16 15 35 35 H 1.08991 * 109.62902 * 171.01107 * 17 16 15 36 36 H 1.09004 * 115.54987 * 325.57757 * 20 18 13 37 37 H 1.09000 * 117.49811 * 215.00100 * 21 20 18 38 38 H 1.08997 * 117.50131 * 0.02562 * 21 20 18 39 39 H 1.08996 * 117.49974 * 359.96996 * 22 20 18 40 40 H 1.09003 * 117.50146 * 145.00045 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0011 12 6 2.6481 -5.9561 0.0004 13 7 3.3577 -5.9392 1.2866 14 6 4.2285 -4.7660 1.3902 15 6 4.6049 -4.5249 2.8561 16 16 5.5294 -5.9703 3.4599 17 6 4.4313 -7.3420 2.9890 18 6 4.0788 -7.1952 1.5049 19 1 4.9951 -7.1940 0.9146 20 6 3.1975 -8.3689 1.0732 21 6 3.6249 -9.1541 -0.1684 22 6 3.7751 -9.7780 1.2214 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8903 26 1 0.9447 -4.9827 -0.8886 27 1 0.9453 -4.9822 0.8913 28 1 3.3544 -5.7623 -0.8068 29 1 2.1868 -6.9326 -0.1472 30 1 5.1336 -4.9341 0.8068 31 1 3.7060 -3.8917 1.0020 32 1 5.2279 -3.6338 2.9323 33 1 3.7002 -4.3946 3.4498 34 1 3.5210 -7.3041 3.5872 35 1 4.9409 -8.2915 3.1521 36 1 2.1286 -8.2426 1.2455 37 1 2.8372 -9.5443 -0.8130 38 1 4.5342 -8.8348 -0.6776 39 1 4.7831 -9.8687 1.6259 40 1 3.0863 -10.5786 1.4910 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451645647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:41 Heat of formation + Delta-G solvation = -33.663214 kcal Electronic energy + Delta-G solvation = -19388.002924 eV Core-core repulsion = 16522.136318 eV Total energy + Delta-G solvation = -2865.866607 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46009 -38.55090 -36.90563 -34.91718 -32.64630 -32.15082 -29.66782 -28.09658 -25.42427 -24.50443 -23.31958 -23.10542 -22.53481 -20.74925 -18.61656 -18.05890 -17.54565 -17.08007 -16.67816 -16.39954 -16.06469 -15.55248 -15.25780 -15.03309 -14.85411 -14.56608 -14.29049 -13.81513 -13.53893 -13.11702 -13.09499 -12.85885 -12.73363 -12.57280 -12.47292 -12.36348 -12.24036 -12.04026 -11.52365 -11.30890 -11.16827 -11.12763 -10.85278 -10.53221 -10.10877 -9.38266 -8.71977 -8.30882 -6.42722 0.81594 1.40301 1.44148 1.51712 1.52505 2.34462 2.65763 2.89038 3.03522 3.18305 3.69474 3.82588 3.92923 4.05702 4.11321 4.15015 4.16998 4.29821 4.37685 4.45278 4.45992 4.52682 4.60905 4.73190 4.82421 4.84728 4.87369 4.91794 5.03513 5.06191 5.20695 5.24301 5.29380 5.33883 5.55703 5.96814 6.00232 6.16885 6.54550 6.83604 7.29164 8.81116 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.023994 B = 0.004599 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.656581 B = 6086.361449 C = 6980.457919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.978 3.022 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.211 3.789 10 O -0.397 6.397 11 C 0.057 3.943 12 C 0.074 3.926 13 N -0.547 5.547 14 C 0.046 3.954 15 C -0.061 4.061 16 S -0.307 6.307 17 C -0.053 4.053 18 C 0.121 3.879 19 H 0.045 0.955 20 C -0.160 4.160 21 C -0.177 4.177 22 C -0.160 4.160 23 H 0.270 0.730 24 H -0.016 1.016 25 H -0.017 1.017 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.035 0.965 29 H 0.119 0.881 30 H 0.035 0.965 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.673 -18.756 2.769 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.190 4.190 3 Si 0.801 3.199 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.136 3.864 10 O -0.318 6.318 11 C -0.020 4.020 12 C -0.053 4.053 13 N -0.272 5.272 14 C -0.083 4.083 15 C -0.209 4.209 16 S -0.080 6.080 17 C -0.201 4.201 18 C 0.011 3.989 19 H 0.063 0.937 20 C -0.180 4.180 21 C -0.214 4.214 22 C -0.197 4.197 23 H 0.078 0.922 24 H 0.001 0.999 25 H 0.001 0.999 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.137 0.863 30 H 0.054 0.946 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.143 0.857 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.108 0.892 39 H 0.118 0.882 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.398 -18.592 3.697 20.733 hybrid contribution -0.844 1.108 -1.158 1.811 sum 7.554 -17.484 2.540 19.215 Atomic orbital electron populations 1.70066 1.07754 1.28577 1.50624 1.25902 0.95856 1.03229 0.94055 0.85308 0.78145 0.77089 0.79343 1.19077 1.20229 1.19034 1.21338 0.94046 0.90742 1.51993 0.91868 1.19775 0.88631 0.84766 0.93239 1.87711 1.34850 1.14325 1.94878 1.22608 0.95881 0.83895 0.99605 1.22150 0.95295 0.98659 0.89236 1.61147 1.30553 1.01833 1.33677 1.22544 0.95613 0.95509 0.94619 1.23433 1.01926 0.97163 0.98418 1.86756 1.35662 1.05165 1.80396 1.23554 1.00884 0.97845 0.97852 1.21327 0.94732 0.88355 0.94454 0.93724 1.22223 0.99809 0.91705 1.04256 1.23151 1.03523 1.03647 0.91127 1.23061 1.02826 0.94529 0.99271 0.92158 0.99861 0.99941 0.93238 0.93993 0.94643 0.86340 0.94650 0.87618 0.87470 0.90089 0.89277 0.85709 0.86894 0.87501 0.89184 0.88238 0.87149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.75 13.29 21.45 0.28 -55.46 16 2 C 0.01 0.47 5.46 84.65 0.46 0.93 16 3 Si 0.98 44.06 29.54 68.60 2.03 46.08 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.54 -31.69 9.43 25.60 0.24 -31.45 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 9 C 0.21 11.61 5.69 71.24 0.41 12.02 16 10 O -0.40 -18.44 7.24 -148.98 -1.08 -19.52 16 11 C 0.06 2.07 6.21 71.98 0.45 2.51 16 12 C 0.07 2.09 5.26 86.30 0.45 2.54 16 13 N -0.55 -15.57 4.26 -872.23 -3.72 -19.29 16 14 C 0.05 1.50 5.24 86.47 0.45 1.96 16 15 C -0.06 -1.84 6.69 72.07 0.48 -1.36 16 16 S -0.31 -8.23 22.40 -56.49 -1.27 -9.50 16 17 C -0.05 -1.14 5.83 72.06 0.42 -0.72 16 18 C 0.12 2.70 2.12 45.08 0.10 2.79 16 19 H 0.04 1.08 7.67 -2.39 -0.02 1.06 16 20 C -0.16 -2.73 3.41 -10.79 -0.04 -2.77 16 21 C -0.18 -2.54 9.93 30.62 0.30 -2.24 16 22 C -0.16 -2.02 9.71 30.62 0.30 -1.72 16 23 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 24 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 25 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 26 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.04 1.05 8.04 -2.39 -0.02 1.03 16 29 H 0.12 2.64 5.33 -2.39 -0.01 2.63 16 30 H 0.04 1.14 7.91 -2.39 -0.02 1.12 16 31 H 0.11 4.26 4.67 -2.39 -0.01 4.25 16 32 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 33 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.12 2.11 7.22 -2.39 -0.02 2.09 16 36 H 0.11 2.04 7.50 -2.39 -0.02 2.02 16 37 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.38 8.05 -2.39 -0.02 1.36 16 39 H 0.10 1.17 7.58 -2.39 -0.02 1.16 16 40 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -63.57 326.39 1.27 -62.29 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 1.00 Total: 12.92 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 4.03 Total: -17.52 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -3.43 Total: -74.76 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -1.08 Total: -19.52 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.27 Total: -9.50 kcal Total: -63.57 1.27 -62.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451645647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.632 kcal (2) G-P(sol) polarization free energy of solvation -63.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds