Wall clock time and date at job start Mon Mar 30 2020 05:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46900 * 109.47412 * 2.30257 * 3 2 1 5 5 C 1.46894 * 110.99988 * 314.30040 * 4 3 2 6 6 C 1.53236 * 109.34241 * 172.74514 * 5 4 3 7 7 N 1.47089 * 108.51884 * 53.83023 * 6 5 4 8 8 C 1.36939 * 120.87587 * 128.79217 * 7 6 5 9 9 H 1.08002 * 119.99358 * 146.33870 * 8 7 6 10 10 C 1.38802 * 120.00593 * 326.33704 * 8 7 6 11 11 N 1.31628 * 120.00126 * 341.83215 * 10 8 7 12 12 Si 1.86798 * 120.00320 * 161.83173 * 10 8 7 13 13 H 1.48502 * 109.47199 * 89.99878 * 12 10 8 14 14 H 1.48502 * 109.47394 * 210.00234 * 12 10 8 15 15 H 1.48511 * 109.46929 * 330.00030 * 12 10 8 16 16 C 1.47075 * 118.23606 * 308.81803 * 7 6 5 17 17 H 1.09002 * 109.78864 * 291.37409 * 16 7 6 18 18 C 1.50708 * 109.62724 * 170.89347 * 16 7 6 19 19 C 1.38229 * 120.00121 * 130.53038 * 18 16 7 20 20 C 1.38230 * 120.00033 * 180.02562 * 19 18 16 21 21 C 1.38238 * 120.00112 * 0.02562 * 20 19 18 22 22 C 1.38231 * 119.99738 * 0.24608 * 21 20 19 23 23 C 1.38236 * 119.99656 * 310.55643 * 18 16 7 24 24 C 1.46902 * 111.00096 * 190.00262 * 4 3 2 25 25 H 1.09004 * 109.46704 * 242.30303 * 3 2 1 26 26 H 1.09003 * 109.47286 * 122.30546 * 3 2 1 27 27 H 1.08999 * 109.49676 * 292.70994 * 5 4 3 28 28 H 1.09006 * 109.49294 * 52.76147 * 5 4 3 29 29 H 1.09000 * 109.63074 * 173.53876 * 6 5 4 30 30 H 1.08998 * 109.63247 * 294.12415 * 6 5 4 31 31 H 0.96995 * 119.99969 * 179.97438 * 11 10 8 32 32 H 1.07999 * 119.99611 * 0.02562 * 19 18 16 33 33 H 1.08005 * 119.99789 * 179.97438 * 20 19 18 34 34 H 1.07994 * 120.00032 * 179.97438 * 21 20 19 35 35 H 1.08004 * 119.99909 * 179.72938 * 22 21 20 36 36 H 1.07996 * 120.00273 * 359.97438 * 23 18 16 37 37 H 1.08998 * 109.49344 * 67.28995 * 24 4 3 38 38 H 1.09002 * 109.49159 * 307.21400 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0984 -1.3830 -0.0556 5 6 2.3712 -2.2377 0.8923 6 6 2.7822 -3.6982 0.6771 7 7 4.2482 -3.7876 0.7572 8 6 4.8526 -4.7048 1.5749 9 1 5.7896 -5.1548 1.2817 10 6 4.2612 -5.0560 2.7805 11 7 3.3390 -4.2814 3.3116 12 14 4.7741 -6.6280 3.6495 13 1 5.9015 -6.3386 4.5718 14 1 3.6255 -7.1628 4.4242 15 1 5.2031 -7.6325 2.6433 16 6 5.0474 -2.8656 -0.0639 17 1 4.9343 -3.1178 -1.1182 18 6 6.4991 -2.9674 0.3281 19 6 7.4675 -3.1336 -0.6442 20 6 8.7989 -3.2275 -0.2846 21 6 9.1619 -3.1558 1.0473 22 6 8.1929 -2.9953 2.0200 23 6 6.8620 -2.8952 1.6600 24 6 4.5472 -1.4379 0.1805 25 1 2.9711 0.4785 0.9100 26 1 2.9711 0.5500 -0.8686 27 1 2.6134 -1.9381 1.9119 28 1 1.2988 -2.1332 0.7275 29 1 2.3345 -4.3223 1.4505 30 1 2.4482 -4.0317 -0.3053 31 1 2.9255 -4.5271 4.1539 32 1 7.1838 -3.1899 -1.6847 33 1 9.5555 -3.3577 -1.0443 34 1 10.2020 -3.2296 1.3282 35 1 8.4761 -2.9437 3.0610 36 1 6.1054 -2.7654 2.4196 37 1 4.7591 -1.1495 1.2100 38 1 5.0530 -0.7537 -0.5008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459499300.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:01 Heat of formation + Delta-G solvation = 95.091957 kcal Electronic energy + Delta-G solvation = -21030.335077 eV Core-core repulsion = 18066.900514 eV Total energy + Delta-G solvation = -2963.434564 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.24803 -37.93705 -36.18947 -34.39262 -32.34803 -30.77701 -30.24521 -28.43621 -28.37650 -25.23828 -23.19591 -22.53107 -21.93153 -20.67216 -19.02620 -17.40406 -16.81677 -15.97968 -15.53763 -14.86050 -14.81256 -14.59450 -14.22827 -13.83189 -13.38228 -13.32267 -13.17275 -12.77540 -12.47576 -12.35584 -12.22993 -11.91533 -11.67089 -11.36943 -11.25056 -10.95353 -10.81933 -10.62819 -10.43337 -10.22874 -10.06925 -9.87144 -9.69525 -8.59430 -8.25449 -8.00615 -7.96059 -6.61491 -5.88996 -3.36012 1.97592 2.09196 2.84501 2.96639 3.32157 3.40404 3.44105 4.11808 4.34487 4.47408 4.52656 5.24305 5.31427 5.40606 5.43423 5.47926 5.55368 5.60252 5.79888 5.81798 5.95251 6.11500 6.15372 6.24567 6.29791 6.48452 6.56345 6.59723 6.61735 6.82906 7.04658 7.11689 7.21148 7.31996 7.37686 7.48961 7.63619 7.69996 7.75100 7.77134 8.38985 9.10172 9.71333 10.33058 11.15496 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.013954 B = 0.008274 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.078438 B = 3383.395938 C = 4954.575945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.221 3.779 3 C 0.143 3.857 4 N -0.532 5.532 5 C 0.042 3.958 6 C 0.168 3.832 7 N -0.585 5.585 8 C -0.239 4.239 9 H 0.065 0.935 10 C 0.008 3.992 11 N -0.893 5.893 12 Si 0.895 3.105 13 H -0.286 1.286 14 H -0.290 1.290 15 H -0.279 1.279 16 C 0.210 3.790 17 H 0.046 0.954 18 C -0.065 4.065 19 C -0.116 4.116 20 C -0.141 4.141 21 C -0.129 4.129 22 C -0.140 4.140 23 C -0.056 4.056 24 C 0.053 3.947 25 H 0.075 0.925 26 H 0.113 0.887 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.011 0.989 31 H 0.254 0.746 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.135 0.865 37 H 0.041 0.959 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.745 6.536 -5.135 10.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.097 4.097 3 C 0.013 3.987 4 N -0.258 5.258 5 C -0.087 4.087 6 C 0.042 3.958 7 N -0.308 5.308 8 C -0.369 4.369 9 H 0.083 0.917 10 C -0.191 4.191 11 N -0.536 5.536 12 Si 0.724 3.276 13 H -0.213 1.213 14 H -0.216 1.216 15 H -0.204 1.204 16 C 0.104 3.896 17 H 0.063 0.937 18 C -0.066 4.066 19 C -0.135 4.135 20 C -0.160 4.160 21 C -0.148 4.148 22 C -0.158 4.158 23 C -0.074 4.074 24 C -0.076 4.076 25 H 0.092 0.908 26 H 0.131 0.869 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.029 0.971 31 H 0.064 0.936 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.153 0.847 37 H 0.060 0.940 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.851 6.316 -5.438 9.643 hybrid contribution 0.812 -0.551 1.477 1.773 sum 5.662 5.766 -3.961 9.000 Atomic orbital electron populations 1.81168 1.13046 1.08303 1.09353 1.29011 0.95175 0.92807 0.92706 1.19711 0.81518 0.93970 1.03492 1.62235 1.05260 1.04962 1.53375 1.22726 0.95653 0.96397 0.93908 1.20921 0.84111 0.92378 0.98380 1.44245 1.00430 1.37391 1.48737 1.19019 1.06907 1.14064 0.96891 0.91693 1.25085 0.99604 0.98616 0.95820 1.69976 1.29384 1.35783 1.18465 0.86413 0.77663 0.83977 0.79499 1.21297 1.21604 1.20389 1.19638 0.86678 0.88239 0.95088 0.93689 1.19822 0.94724 0.98551 0.93462 1.20951 0.92779 1.00985 0.98774 1.20869 0.95853 1.03396 0.95849 1.20962 0.98582 1.01846 0.93371 1.21099 0.93542 1.02434 0.98713 1.21213 0.95255 0.94494 0.96477 1.22665 0.86034 0.99308 0.99612 0.90780 0.86930 0.92864 0.92799 0.88500 0.97132 0.93562 0.86915 0.87249 0.87403 0.87115 0.84685 0.94026 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.65 18.54 42.15 0.78 -6.87 16 2 C 0.22 3.32 13.42 -20.76 -0.28 3.04 16 3 C 0.14 1.80 5.77 -6.61 -0.04 1.76 16 4 N -0.53 -8.70 4.76 -237.83 -1.13 -9.84 16 5 C 0.04 0.82 5.25 -3.71 -0.02 0.80 16 6 C 0.17 3.75 5.93 -3.60 -0.02 3.73 16 7 N -0.58 -13.25 2.97 -165.79 -0.49 -13.75 16 8 C -0.24 -5.95 6.54 -15.06 -0.10 -6.05 16 9 H 0.07 1.69 6.90 -52.49 -0.36 1.32 16 10 C 0.01 0.21 4.92 -17.43 -0.09 0.13 16 11 N -0.89 -23.47 11.39 55.49 0.63 -22.84 16 12 Si 0.89 20.79 29.59 -169.99 -5.03 15.76 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 16 C 0.21 4.00 3.25 -68.64 -0.22 3.78 16 17 H 0.05 0.87 7.92 -51.93 -0.41 0.45 16 18 C -0.06 -1.18 3.94 -104.62 -0.41 -1.60 16 19 C -0.12 -1.88 9.67 -39.59 -0.38 -2.26 16 20 C -0.14 -2.10 10.05 -39.58 -0.40 -2.50 16 21 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 22 C -0.14 -2.36 10.05 -39.58 -0.40 -2.76 16 23 C -0.06 -1.07 7.22 -39.58 -0.29 -1.36 16 24 C 0.05 0.87 4.83 -3.70 -0.02 0.85 16 25 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 26 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.05 1.05 6.46 -51.93 -0.34 0.71 16 29 H 0.10 2.44 5.78 -51.93 -0.30 2.14 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 32 H 0.11 1.61 7.98 -52.49 -0.42 1.19 16 33 H 0.11 1.34 8.06 -52.48 -0.42 0.91 16 34 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 36 H 0.14 2.97 7.23 -52.49 -0.38 2.59 16 37 H 0.04 0.75 7.82 -51.93 -0.41 0.34 16 38 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 LS Contribution 312.62 15.07 4.71 4.71 Total: -1.00 -27.45 312.62 -8.71 -36.17 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.12 Total: 1.43 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -3.06 Total: -4.78 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.21 Total: -53.29 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.45 -8.71 -36.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459499300.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.257 kcal (2) G-P(sol) polarization free energy of solvation -27.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds