Wall clock time and date at job start Mon Mar 30 2020 05:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46900 * 109.47412 * 2.30257 * 3 2 1 5 5 C 1.46894 * 110.99988 * 314.30040 * 4 3 2 6 6 C 1.53236 * 109.34241 * 172.74514 * 5 4 3 7 7 N 1.47089 * 108.51884 * 53.83023 * 6 5 4 8 8 C 1.36939 * 120.87587 * 128.79217 * 7 6 5 9 9 H 1.08002 * 119.99358 * 146.33870 * 8 7 6 10 10 C 1.38802 * 120.00593 * 326.33704 * 8 7 6 11 11 N 1.31628 * 120.00126 * 341.83215 * 10 8 7 12 12 Si 1.86798 * 120.00320 * 161.83173 * 10 8 7 13 13 H 1.48502 * 109.47199 * 89.99878 * 12 10 8 14 14 H 1.48502 * 109.47394 * 210.00234 * 12 10 8 15 15 H 1.48511 * 109.46929 * 330.00030 * 12 10 8 16 16 C 1.47075 * 118.23606 * 308.81803 * 7 6 5 17 17 H 1.09002 * 109.78864 * 291.37409 * 16 7 6 18 18 C 1.50708 * 109.62724 * 170.89347 * 16 7 6 19 19 C 1.38229 * 120.00121 * 130.53038 * 18 16 7 20 20 C 1.38230 * 120.00033 * 180.02562 * 19 18 16 21 21 C 1.38238 * 120.00112 * 0.02562 * 20 19 18 22 22 C 1.38231 * 119.99738 * 0.24608 * 21 20 19 23 23 C 1.38236 * 119.99656 * 310.55643 * 18 16 7 24 24 C 1.46902 * 111.00096 * 190.00262 * 4 3 2 25 25 H 1.09004 * 109.46704 * 242.30303 * 3 2 1 26 26 H 1.09003 * 109.47286 * 122.30546 * 3 2 1 27 27 H 1.08999 * 109.49676 * 292.70994 * 5 4 3 28 28 H 1.09006 * 109.49294 * 52.76147 * 5 4 3 29 29 H 1.09000 * 109.63074 * 173.53876 * 6 5 4 30 30 H 1.08998 * 109.63247 * 294.12415 * 6 5 4 31 31 H 0.96995 * 119.99969 * 179.97438 * 11 10 8 32 32 H 1.07999 * 119.99611 * 0.02562 * 19 18 16 33 33 H 1.08005 * 119.99789 * 179.97438 * 20 19 18 34 34 H 1.07994 * 120.00032 * 179.97438 * 21 20 19 35 35 H 1.08004 * 119.99909 * 179.72938 * 22 21 20 36 36 H 1.07996 * 120.00273 * 359.97438 * 23 18 16 37 37 H 1.08998 * 109.49344 * 67.28995 * 24 4 3 38 38 H 1.09002 * 109.49159 * 307.21400 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0984 -1.3830 -0.0556 5 6 2.3712 -2.2377 0.8923 6 6 2.7822 -3.6982 0.6771 7 7 4.2482 -3.7876 0.7572 8 6 4.8526 -4.7048 1.5749 9 1 5.7896 -5.1548 1.2817 10 6 4.2612 -5.0560 2.7805 11 7 3.3390 -4.2814 3.3116 12 14 4.7741 -6.6280 3.6495 13 1 5.9015 -6.3386 4.5718 14 1 3.6255 -7.1628 4.4242 15 1 5.2031 -7.6325 2.6433 16 6 5.0474 -2.8656 -0.0639 17 1 4.9343 -3.1178 -1.1182 18 6 6.4991 -2.9674 0.3281 19 6 7.4675 -3.1336 -0.6442 20 6 8.7989 -3.2275 -0.2846 21 6 9.1619 -3.1558 1.0473 22 6 8.1929 -2.9953 2.0200 23 6 6.8620 -2.8952 1.6600 24 6 4.5472 -1.4379 0.1805 25 1 2.9711 0.4785 0.9100 26 1 2.9711 0.5500 -0.8686 27 1 2.6134 -1.9381 1.9119 28 1 1.2988 -2.1332 0.7275 29 1 2.3345 -4.3223 1.4505 30 1 2.4482 -4.0317 -0.3053 31 1 2.9255 -4.5271 4.1539 32 1 7.1838 -3.1899 -1.6847 33 1 9.5555 -3.3577 -1.0443 34 1 10.2020 -3.2296 1.3282 35 1 8.4761 -2.9437 3.0610 36 1 6.1054 -2.7654 2.4196 37 1 4.7591 -1.1495 1.2100 38 1 5.0530 -0.7537 -0.5008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459499300.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:00 Heat of formation + Delta-G solvation = 79.033468 kcal Electronic energy + Delta-G solvation = -21031.031426 eV Core-core repulsion = 18066.900514 eV Total energy + Delta-G solvation = -2964.130912 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.138 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.65657 -39.24796 -37.55532 -35.93750 -33.93758 -32.45093 -31.53369 -29.91084 -29.76581 -26.84931 -24.68719 -24.16683 -23.24063 -22.05137 -20.60975 -18.86373 -18.27079 -17.40188 -16.99759 -16.47924 -16.06703 -15.98991 -15.66394 -15.30124 -14.97742 -14.92217 -14.60911 -14.12290 -13.84036 -13.73014 -13.53298 -13.31371 -13.16702 -12.93946 -12.66973 -12.58867 -12.50778 -12.18210 -12.16596 -11.76568 -11.65343 -11.47537 -11.29154 -10.46263 -9.54551 -9.40372 -9.31255 -8.42500 -7.81639 -5.29600 0.69185 0.80385 1.43313 1.47902 1.54424 1.62563 1.78980 2.52479 2.96324 3.09873 3.20137 3.34746 3.71541 4.17419 4.26040 4.28331 4.39336 4.44044 4.50166 4.55595 4.57093 4.69762 4.77751 4.81150 4.91449 4.96577 5.03277 5.17152 5.34469 5.44571 5.49947 5.55037 5.72131 5.80289 5.89318 6.04424 6.10485 6.13215 6.39339 6.49874 6.56470 7.19525 7.87813 8.44978 9.20316 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.013954 B = 0.008274 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.078438 B = 3383.395938 C = 4954.575945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C 0.239 3.761 3 C 0.145 3.855 4 N -0.533 5.533 5 C 0.063 3.937 6 C 0.167 3.833 7 N -0.598 5.598 8 C -0.226 4.226 9 H 0.054 0.946 10 C -0.035 4.035 11 N -0.916 5.916 12 Si 0.940 3.060 13 H -0.286 1.286 14 H -0.297 1.297 15 H -0.279 1.279 16 C 0.205 3.795 17 H 0.050 0.950 18 C -0.081 4.081 19 C -0.118 4.118 20 C -0.133 4.133 21 C -0.126 4.126 22 C -0.149 4.149 23 C -0.077 4.077 24 C 0.063 3.937 25 H 0.095 0.905 26 H 0.161 0.839 27 H 0.024 0.976 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.011 0.989 31 H 0.246 0.754 32 H 0.134 0.866 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.023 0.977 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.263 7.648 -7.163 13.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.078 4.078 3 C 0.016 3.984 4 N -0.259 5.259 5 C -0.067 4.067 6 C 0.041 3.959 7 N -0.322 5.322 8 C -0.356 4.356 9 H 0.072 0.928 10 C -0.231 4.231 11 N -0.561 5.561 12 Si 0.770 3.230 13 H -0.213 1.213 14 H -0.223 1.223 15 H -0.204 1.204 16 C 0.099 3.901 17 H 0.067 0.933 18 C -0.081 4.081 19 C -0.137 4.137 20 C -0.151 4.151 21 C -0.144 4.144 22 C -0.168 4.168 23 C -0.095 4.095 24 C -0.066 4.066 25 H 0.112 0.888 26 H 0.178 0.822 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.028 0.972 31 H 0.056 0.944 32 H 0.152 0.848 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.136 0.864 36 H 0.113 0.887 37 H 0.041 0.959 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.389 7.443 -7.487 12.886 hybrid contribution 0.151 -0.874 2.010 2.197 sum 7.540 6.569 -5.477 11.402 Atomic orbital electron populations 1.81188 1.14588 1.09573 1.11124 1.29455 0.95594 0.91530 0.91257 1.20053 0.79763 0.91954 1.06656 1.62184 1.05088 1.06951 1.51687 1.22292 0.95757 0.95511 0.93090 1.20761 0.84310 0.93802 0.96977 1.44368 1.00752 1.38340 1.48691 1.18954 1.05968 1.14088 0.96620 0.92846 1.25530 1.00368 1.00548 0.96684 1.70090 1.30735 1.36780 1.18513 0.85693 0.76894 0.81849 0.78552 1.21336 1.22344 1.20394 1.19781 0.87087 0.88971 0.94246 0.93283 1.19822 0.94750 0.99937 0.93634 1.21214 0.92975 1.00194 0.99283 1.21307 0.96053 1.01148 0.96567 1.21328 0.99662 1.00225 0.93141 1.21268 0.93102 1.02483 0.99909 1.20932 0.95477 0.96986 0.96130 1.22553 0.86069 0.98389 0.99596 0.88759 0.82184 0.95808 0.92998 0.91876 0.97157 0.94445 0.84786 0.83679 0.84236 0.86405 0.88750 0.95911 0.87422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.62 18.54 20.01 0.37 -16.24 16 2 C 0.24 6.81 13.42 89.44 1.20 8.01 16 3 C 0.15 3.19 5.77 84.50 0.49 3.68 16 4 N -0.53 -16.50 4.76 -906.36 -4.32 -20.81 16 5 C 0.06 2.50 5.25 86.38 0.45 2.96 16 6 C 0.17 7.72 5.93 86.35 0.51 8.23 16 7 N -0.60 -27.62 2.97 -678.44 -2.01 -29.63 16 8 C -0.23 -11.54 6.54 84.03 0.55 -10.99 16 9 H 0.05 2.83 6.90 -2.91 -0.02 2.81 16 10 C -0.03 -1.83 4.92 84.86 0.42 -1.42 16 11 N -0.92 -50.54 11.39 21.65 0.25 -50.29 16 12 Si 0.94 44.01 29.59 68.60 2.03 46.04 16 13 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 14 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 15 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 16 C 0.20 7.61 3.25 44.22 0.14 7.75 16 17 H 0.05 1.79 7.92 -2.39 -0.02 1.77 16 18 C -0.08 -2.85 3.94 -19.86 -0.08 -2.93 16 19 C -0.12 -3.44 9.67 22.27 0.22 -3.22 16 20 C -0.13 -3.38 10.05 22.27 0.22 -3.15 16 21 C -0.13 -3.36 10.05 22.27 0.22 -3.14 16 22 C -0.15 -4.88 10.05 22.27 0.22 -4.65 16 23 C -0.08 -2.94 7.22 22.27 0.16 -2.78 16 24 C 0.06 1.94 4.83 86.38 0.42 2.36 16 25 H 0.09 1.83 8.08 -2.38 -0.02 1.81 16 26 H 0.16 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.05 2.06 6.46 -2.38 -0.02 2.04 16 29 H 0.06 3.35 5.78 -2.39 -0.01 3.34 16 30 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 32 H 0.13 3.28 7.98 -2.91 -0.02 3.26 16 33 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 34 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 35 H 0.12 3.54 8.06 -2.91 -0.02 3.52 16 36 H 0.09 4.37 7.23 -2.91 -0.02 4.35 16 37 H 0.02 0.80 7.82 -2.39 -0.02 0.78 16 38 H 0.11 2.49 8.11 -2.39 -0.02 2.47 16 Total: -1.00 -62.86 312.62 2.52 -60.34 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 1.05 Total: 9.90 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 5.15 Total: 0.70 kcal Atomic # 7 Polarization: -111.26 SS G_CDS: -5.71 Total: -116.98 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -62.86 2.52 -60.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459499300.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.371 kcal (2) G-P(sol) polarization free energy of solvation -62.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds