Wall clock time and date at job start Mon Mar 30 2020 04:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 119.99865 * 2 1 4 4 H 1.48499 * 109.47179 * 239.99865 * 3 2 1 5 5 H 1.48497 * 109.47370 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47626 * 119.99868 * 3 2 1 7 7 C 1.37880 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99907 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99719 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46635 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46890 * 179.97438 * 10 9 7 12 12 N 1.46893 * 109.47053 * 180.02562 * 11 10 9 13 13 C 1.45477 * 111.00366 * 75.69616 * 12 11 10 14 14 C 1.48843 * 116.68423 * 217.14409 * 13 12 11 15 15 C 1.56373 * 106.54495 * 298.50973 * 14 13 12 16 16 H 1.09000 * 112.04619 * 194.25701 * 15 14 13 17 17 C 1.52832 * 113.44885 * 321.42654 * 15 14 13 18 18 C 1.54583 * 111.43770 * 125.36074 * 17 15 14 19 19 C 1.58918 * 105.23372 * 315.58407 * 18 17 15 20 20 H 1.09006 * 118.77149 * 177.09110 * 19 18 17 21 21 C 1.44136 * 110.99994 * 190.00059 * 12 11 10 22 22 S 1.82930 * 104.47838 * 73.30001 * 15 14 13 23 23 O 1.42106 * 109.46936 * 12.19671 * 22 15 14 24 24 H 0.97000 * 120.00233 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47050 * 59.99945 * 9 7 2 26 26 H 1.08996 * 109.47010 * 299.99136 * 9 7 2 27 27 H 1.09009 * 109.46800 * 60.00037 * 10 9 7 28 28 H 1.08995 * 109.47303 * 300.00136 * 10 9 7 29 29 H 1.09000 * 109.47056 * 59.99924 * 11 10 9 30 30 H 1.09005 * 109.46961 * 300.00184 * 11 10 9 31 31 H 1.08999 * 108.00685 * 338.96012 * 13 12 11 32 32 H 1.08995 * 108.00708 * 95.32638 * 13 12 11 33 33 H 1.08994 * 110.03472 * 179.24873 * 14 13 12 34 34 H 1.08999 * 110.03390 * 57.76403 * 14 13 12 35 35 H 1.09002 * 109.09645 * 245.88473 * 17 15 14 36 36 H 1.09006 * 109.09392 * 4.84451 * 17 15 14 37 37 H 1.09003 * 110.29122 * 74.52550 * 18 17 15 38 38 H 1.09004 * 110.29663 * 196.64490 * 18 17 15 39 39 H 1.08994 * 109.53718 * 15.40843 * 21 12 11 40 40 H 1.09004 * 109.53994 * 255.16940 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4349 -6.1036 0.0018 13 6 3.0287 -6.2812 1.3179 14 6 4.4648 -6.6706 1.3563 15 6 4.5702 -8.0548 0.6364 16 1 5.5266 -8.5424 0.8253 17 6 3.3992 -8.9888 0.9398 18 6 2.7196 -9.4828 -0.3578 19 6 2.5839 -8.1923 -1.2754 20 1 2.1700 -8.3025 -2.2778 21 6 1.7634 -7.3575 -0.2313 22 16 4.3525 -7.6653 -1.1377 23 8 4.4443 -6.2602 -1.3289 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6042 0.8906 28 1 2.8720 -3.6043 -0.8894 29 1 0.8534 -5.0451 -0.8886 30 1 0.8539 -5.0446 0.8914 31 1 2.9185 -5.3457 1.8663 32 1 2.4580 -7.0459 1.8447 33 1 4.7998 -6.7606 2.3895 34 1 5.0668 -5.9295 0.8305 35 1 3.7652 -9.8490 1.5004 36 1 2.6661 -8.4564 1.5458 37 1 3.3411 -10.2319 -0.8485 38 1 1.7348 -9.8940 -0.1359 39 1 0.7632 -7.1684 -0.6209 40 1 1.6925 -7.9125 0.7042 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528784344.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:54 Heat of formation + Delta-G solvation = 19.074623 kcal Electronic energy + Delta-G solvation = -19944.337889 eV Core-core repulsion = 17080.758166 eV Total energy + Delta-G solvation = -2863.579723 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.17531 -35.81738 -35.00554 -33.34985 -33.09828 -31.20258 -27.70038 -26.12231 -25.79068 -23.53384 -22.16879 -21.32282 -19.85210 -19.37103 -17.28551 -16.35044 -16.02274 -15.74315 -15.57778 -14.66340 -14.55827 -14.25027 -13.70424 -13.52474 -13.29819 -12.94191 -12.24111 -12.08214 -11.91344 -11.79460 -11.59034 -11.35879 -11.29174 -10.88883 -10.84762 -10.71913 -10.58029 -10.43321 -10.35758 -10.23444 -9.50527 -9.38024 -9.19076 -8.96370 -8.25681 -8.08315 -7.81428 -5.91515 -3.92687 2.03803 2.68689 3.39760 3.42646 3.46809 4.03984 4.16621 4.45062 4.54525 4.65662 4.73564 4.86358 4.93584 5.15807 5.25061 5.35994 5.44034 5.51368 5.59024 5.71339 5.73077 5.76231 5.83450 5.91797 5.92815 5.98127 6.11127 6.18262 6.33413 6.43206 6.85521 6.93247 7.24385 7.37633 7.50171 7.79539 7.95092 8.10106 8.54902 9.14249 9.70548 11.20155 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.035886 B = 0.004320 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.072036 B = 6480.333979 C = 6664.999305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.098 4.098 11 C 0.059 3.941 12 N -0.495 5.495 13 C 0.018 3.982 14 C -0.099 4.099 15 C -0.410 4.410 16 H 0.118 0.882 17 C -0.125 4.125 18 C -0.118 4.118 19 C -0.387 4.387 20 H 0.136 0.864 21 C 0.014 3.986 22 S 1.227 4.773 23 O -0.795 6.795 24 H 0.260 0.740 25 H 0.014 0.986 26 H 0.011 0.989 27 H 0.042 0.958 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.027 0.973 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.034 -24.917 -0.137 26.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.136 4.136 11 C -0.067 4.067 12 N -0.218 5.218 13 C -0.111 4.111 14 C -0.137 4.137 15 C -0.526 4.526 16 H 0.136 0.864 17 C -0.163 4.163 18 C -0.157 4.157 19 C -0.504 4.504 20 H 0.154 0.846 21 C -0.115 4.115 22 S 1.421 4.579 23 O -0.789 6.789 24 H 0.069 0.931 25 H 0.032 0.968 26 H 0.029 0.971 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.937 -24.230 -1.220 25.855 hybrid contribution -1.710 1.822 2.120 3.277 sum 7.228 -22.408 0.900 23.562 Atomic orbital electron populations 1.69962 1.06054 1.26537 1.51339 1.25025 0.94843 0.99199 0.95477 0.86649 0.79560 0.83108 0.78642 1.20198 1.21326 1.20313 1.21236 0.93062 0.91045 1.49962 0.92746 1.19081 0.94046 0.91633 0.96789 1.21565 0.98810 0.92098 1.01160 1.22441 0.93103 0.91413 0.99763 1.63057 1.29419 1.02612 1.26686 1.21718 0.96499 1.01362 0.91476 1.21330 0.97238 0.94460 1.00719 1.27874 1.02616 1.00206 1.21902 0.86403 1.22197 0.96764 0.98855 0.98464 1.23234 1.01441 0.96562 0.94485 1.29972 1.18115 1.01241 1.01028 0.84649 1.23658 0.97537 0.91761 0.98560 1.71286 0.93924 0.99773 0.92924 1.93230 1.79431 1.29589 1.76653 0.93085 0.96751 0.97105 0.93937 0.91993 0.91308 0.95437 0.91589 0.93699 0.91235 0.89310 0.91423 0.89944 0.90569 0.90636 0.92478 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.40 13.29 55.43 0.74 -27.67 16 2 C 0.05 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 22.93 29.54 -169.99 -5.02 17.91 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.51 -15.78 9.11 -34.44 -0.31 -16.09 16 8 H 0.05 1.64 7.74 -52.49 -0.41 1.24 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.49 16 10 C -0.10 -2.37 5.24 -26.73 -0.14 -2.51 16 11 C 0.06 1.19 4.50 -3.83 -0.02 1.17 16 12 N -0.50 -8.42 2.21 -238.05 -0.53 -8.95 16 13 C 0.02 0.27 4.40 -6.63 -0.03 0.24 16 14 C -0.10 -1.32 5.75 -26.95 -0.16 -1.47 16 15 C -0.41 -3.90 4.12 -25.00 -0.10 -4.00 16 16 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 17 C -0.13 -1.03 5.29 -25.99 -0.14 -1.16 16 18 C -0.12 -0.83 5.53 -22.61 -0.13 -0.96 16 19 C -0.39 -3.92 5.97 -21.36 -0.13 -4.05 16 20 H 0.14 1.23 8.14 -51.93 -0.42 0.81 16 21 C 0.01 0.19 4.80 -3.21 -0.02 0.18 16 22 S 1.23 12.78 13.49 -107.50 -1.45 11.33 16 23 O -0.79 -14.24 14.31 -35.23 -0.50 -14.75 16 24 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 25 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.04 1.02 6.94 -51.92 -0.36 0.66 16 28 H 0.06 1.61 8.14 -51.93 -0.42 1.18 16 29 H 0.07 1.38 7.81 -51.93 -0.41 0.98 16 30 H 0.03 0.53 7.99 -51.93 -0.42 0.12 16 31 H 0.07 1.15 6.37 -51.93 -0.33 0.82 16 32 H 0.05 0.60 4.57 -51.93 -0.24 0.36 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.43 6.99 -51.93 -0.36 1.07 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.81 3.52 -51.93 -0.18 0.63 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.51 8.02 -51.93 -0.42 0.10 16 39 H 0.06 0.80 7.37 -51.93 -0.38 0.41 16 40 H 0.08 0.91 3.42 -51.93 -0.18 0.74 16 LS Contribution 303.49 15.07 4.57 4.57 Total: -1.00 -37.26 303.49 -9.79 -47.04 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -6.19 Total: -2.91 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: -1.40 Total: -26.59 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.21 Total: -36.62 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.50 Total: -14.75 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Atomic # 16 Polarization: 12.78 SS G_CDS: -1.45 Total: 11.33 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -37.26 -9.79 -47.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528784344.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.119 kcal (2) G-P(sol) polarization free energy of solvation -37.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds