Wall clock time and date at job start Mon Mar 30 2020 04:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 119.99865 * 2 1 4 4 H 1.48499 * 109.47179 * 239.99865 * 3 2 1 5 5 H 1.48497 * 109.47370 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47626 * 119.99868 * 3 2 1 7 7 C 1.37880 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99907 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99719 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46635 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46890 * 179.97438 * 10 9 7 12 12 N 1.46893 * 109.47053 * 180.02562 * 11 10 9 13 13 C 1.45477 * 111.00366 * 75.69616 * 12 11 10 14 14 C 1.48843 * 116.68423 * 217.14409 * 13 12 11 15 15 C 1.56373 * 106.54495 * 298.50973 * 14 13 12 16 16 H 1.09000 * 112.04619 * 194.25701 * 15 14 13 17 17 C 1.52832 * 113.44885 * 321.42654 * 15 14 13 18 18 C 1.54583 * 111.43770 * 125.36074 * 17 15 14 19 19 C 1.58918 * 105.23372 * 315.58407 * 18 17 15 20 20 H 1.09006 * 118.77149 * 177.09110 * 19 18 17 21 21 C 1.44136 * 110.99994 * 190.00059 * 12 11 10 22 22 S 1.82930 * 104.47838 * 73.30001 * 15 14 13 23 23 O 1.42106 * 109.46936 * 12.19671 * 22 15 14 24 24 H 0.97000 * 120.00233 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47050 * 59.99945 * 9 7 2 26 26 H 1.08996 * 109.47010 * 299.99136 * 9 7 2 27 27 H 1.09009 * 109.46800 * 60.00037 * 10 9 7 28 28 H 1.08995 * 109.47303 * 300.00136 * 10 9 7 29 29 H 1.09000 * 109.47056 * 59.99924 * 11 10 9 30 30 H 1.09005 * 109.46961 * 300.00184 * 11 10 9 31 31 H 1.08999 * 108.00685 * 338.96012 * 13 12 11 32 32 H 1.08995 * 108.00708 * 95.32638 * 13 12 11 33 33 H 1.08994 * 110.03472 * 179.24873 * 14 13 12 34 34 H 1.08999 * 110.03390 * 57.76403 * 14 13 12 35 35 H 1.09002 * 109.09645 * 245.88473 * 17 15 14 36 36 H 1.09006 * 109.09392 * 4.84451 * 17 15 14 37 37 H 1.09003 * 110.29122 * 74.52550 * 18 17 15 38 38 H 1.09004 * 110.29663 * 196.64490 * 18 17 15 39 39 H 1.08994 * 109.53718 * 15.40843 * 21 12 11 40 40 H 1.09004 * 109.53994 * 255.16940 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4349 -6.1036 0.0018 13 6 3.0287 -6.2812 1.3179 14 6 4.4648 -6.6706 1.3563 15 6 4.5702 -8.0548 0.6364 16 1 5.5266 -8.5424 0.8253 17 6 3.3992 -8.9888 0.9398 18 6 2.7196 -9.4828 -0.3578 19 6 2.5839 -8.1923 -1.2754 20 1 2.1700 -8.3025 -2.2778 21 6 1.7634 -7.3575 -0.2313 22 16 4.3525 -7.6653 -1.1377 23 8 4.4443 -6.2602 -1.3289 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6042 0.8906 28 1 2.8720 -3.6043 -0.8894 29 1 0.8534 -5.0451 -0.8886 30 1 0.8539 -5.0446 0.8914 31 1 2.9185 -5.3457 1.8663 32 1 2.4580 -7.0459 1.8447 33 1 4.7998 -6.7606 2.3895 34 1 5.0668 -5.9295 0.8305 35 1 3.7652 -9.8490 1.5004 36 1 2.6661 -8.4564 1.5458 37 1 3.3411 -10.2319 -0.8485 38 1 1.7348 -9.8940 -0.1359 39 1 0.7632 -7.1684 -0.6209 40 1 1.6925 -7.9125 0.7042 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528784344.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:54 Heat of formation + Delta-G solvation = -6.941129 kcal Electronic energy + Delta-G solvation = -19945.466017 eV Core-core repulsion = 17080.758166 eV Total energy + Delta-G solvation = -2864.707850 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.27853 -37.07603 -36.29713 -35.31689 -34.07256 -33.20756 -29.26524 -27.53729 -26.79657 -25.20336 -23.47661 -22.55855 -21.62381 -20.33920 -18.66252 -18.09392 -17.16694 -16.95064 -16.57363 -16.51297 -16.06313 -15.60904 -14.97468 -14.72563 -14.39814 -14.36356 -13.93951 -13.80450 -13.42448 -12.93092 -12.80680 -12.62810 -12.59439 -12.48929 -12.35747 -12.29728 -11.90185 -11.73844 -11.64689 -11.45261 -11.42488 -11.31656 -11.00820 -10.63632 -10.32752 -9.31930 -8.77423 -8.28162 -6.40418 1.21708 1.32329 1.37135 1.45436 1.88706 2.34614 2.90101 3.03671 3.21013 3.55690 3.73616 3.88069 3.89732 4.04972 4.10296 4.15316 4.37064 4.43017 4.48485 4.56353 4.59198 4.68161 4.75858 4.85469 4.90582 4.93119 5.02911 5.10291 5.13541 5.14944 5.26864 5.37041 5.40230 5.45052 5.60773 5.74420 5.99164 6.07065 6.19314 6.73520 7.28515 8.83892 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.035886 B = 0.004320 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.072036 B = 6480.333979 C = 6664.999305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.970 3.030 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.266 1.266 7 C -0.550 4.550 8 H 0.050 0.950 9 C 0.030 3.970 10 C -0.078 4.078 11 C 0.071 3.929 12 N -0.509 5.509 13 C 0.014 3.986 14 C -0.104 4.104 15 C -0.395 4.395 16 H 0.156 0.844 17 C -0.126 4.126 18 C -0.107 4.107 19 C -0.388 4.388 20 H 0.147 0.853 21 C 0.001 3.999 22 S 1.264 4.736 23 O -0.881 6.881 24 H 0.266 0.734 25 H -0.009 1.009 26 H -0.008 1.008 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.063 0.937 30 H 0.030 0.970 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.117 0.883 38 H 0.087 0.913 39 H 0.046 0.954 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.996 -27.519 0.408 28.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.191 1.191 7 C -0.587 4.587 8 H 0.069 0.931 9 C -0.008 4.008 10 C -0.116 4.116 11 C -0.057 4.057 12 N -0.232 5.232 13 C -0.114 4.114 14 C -0.143 4.143 15 C -0.512 4.512 16 H 0.173 0.827 17 C -0.164 4.164 18 C -0.146 4.146 19 C -0.506 4.506 20 H 0.165 0.835 21 C -0.128 4.128 22 S 1.462 4.538 23 O -0.876 6.876 24 H 0.075 0.925 25 H 0.009 0.991 26 H 0.011 0.989 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.083 0.917 37 H 0.135 0.865 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.913 -26.849 -0.693 28.629 hybrid contribution -2.068 2.544 2.007 3.844 sum 7.845 -24.305 1.315 25.574 Atomic orbital electron populations 1.70084 1.07752 1.28078 1.51216 1.26012 0.95900 1.03417 0.94270 0.85440 0.78335 0.77726 0.79184 1.19350 1.19854 1.19130 1.21581 0.93170 0.92582 1.51416 0.93149 1.18947 0.94164 0.93045 0.94609 1.21238 0.97581 0.93292 0.99450 1.22133 0.93053 0.90947 0.99554 1.63064 1.29006 1.03202 1.27881 1.21869 0.98376 1.00586 0.90533 1.21290 0.95017 0.96123 1.01837 1.27875 1.05561 0.98566 1.19213 0.82663 1.22245 0.95516 0.99360 0.99256 1.23275 1.02967 0.95387 0.92997 1.29990 1.16323 1.02633 1.01625 0.83476 1.23984 0.97424 0.90615 1.00731 1.70255 0.93644 0.96721 0.93174 1.93125 1.81600 1.33487 1.79360 0.92480 0.99092 0.98934 0.94607 0.94477 0.91893 0.95206 0.94989 0.91061 0.89439 0.92949 0.88088 0.91716 0.86455 0.89431 0.93563 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.06 13.29 21.45 0.28 -59.77 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.97 47.60 29.54 68.60 2.03 49.63 16 4 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 5 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.55 -35.09 9.11 25.60 0.23 -34.86 16 8 H 0.05 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.03 1.80 4.97 29.85 0.15 1.95 16 10 C -0.08 -4.01 5.24 30.60 0.16 -3.85 16 11 C 0.07 3.00 4.50 86.31 0.39 3.39 16 12 N -0.51 -17.80 2.21 -907.07 -2.00 -19.80 16 13 C 0.01 0.44 4.40 85.25 0.37 0.82 16 14 C -0.10 -2.72 5.75 30.45 0.18 -2.54 16 15 C -0.39 -6.25 4.12 31.71 0.13 -6.12 16 16 H 0.16 1.39 8.14 -2.39 -0.02 1.37 16 17 C -0.13 -1.46 5.29 31.08 0.16 -1.29 16 18 C -0.11 -0.96 5.53 33.26 0.18 -0.78 16 19 C -0.39 -6.91 5.97 34.07 0.20 -6.71 16 20 H 0.15 2.32 8.14 -2.38 -0.02 2.30 16 21 C 0.00 0.03 4.80 88.17 0.42 0.45 16 22 S 1.26 24.66 13.49 -56.49 -0.76 23.90 16 23 O -0.88 -32.92 14.31 -148.98 -2.13 -35.06 16 24 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 25 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 26 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 27 H 0.04 1.85 6.94 -2.38 -0.02 1.84 16 28 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.06 2.69 7.81 -2.39 -0.02 2.67 16 30 H 0.03 1.22 7.99 -2.38 -0.02 1.21 16 31 H 0.03 1.17 6.37 -2.39 -0.02 1.16 16 32 H 0.07 1.81 4.57 -2.39 -0.01 1.79 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.05 1.77 6.99 -2.39 -0.02 1.75 16 35 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.06 1.01 3.52 -2.38 -0.01 1.00 16 37 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.09 0.71 8.02 -2.39 -0.02 0.69 16 39 H 0.05 1.27 7.37 -2.39 -0.02 1.25 16 40 H 0.10 2.10 3.42 -2.38 -0.01 2.10 16 Total: -1.00 -86.41 303.49 1.48 -84.92 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.02 Total: 5.15 kcal Atomic # 6 Polarization: -52.01 SS G_CDS: 3.05 Total: -48.96 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -1.72 Total: -79.57 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -2.13 Total: -35.06 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Atomic # 16 Polarization: 24.66 SS G_CDS: -0.76 Total: 23.90 kcal Total: -86.41 1.48 -84.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528784344.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.984 kcal (2) G-P(sol) polarization free energy of solvation -86.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds