Wall clock time and date at job start Mon Mar 30 2020 04:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99449 * 2 1 4 4 H 1.48500 * 109.47327 * 270.00079 * 3 2 1 5 5 H 1.48500 * 109.47345 * 30.00213 * 3 2 1 6 6 H 1.48506 * 109.46692 * 150.00198 * 3 2 1 7 7 C 1.37875 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99830 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99745 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47047 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46937 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.46682 * 174.85533 * 11 10 9 13 13 C 1.45395 * 110.99856 * 209.74073 * 12 11 10 14 14 C 1.50748 * 102.31985 * 132.29095 * 13 12 11 15 15 C 1.56601 * 109.03342 * 104.30953 * 14 13 12 16 16 H 1.09005 * 117.55994 * 107.72327 * 15 14 13 17 17 C 1.58941 * 95.20367 * 234.79903 * 15 14 13 18 18 C 1.56194 * 105.47700 * 56.46967 * 17 15 14 19 19 C 1.52667 * 110.51824 * 44.06614 * 18 17 15 20 20 H 1.08996 * 111.16136 * 107.77090 * 19 18 17 21 21 C 1.43056 * 111.00176 * 75.70889 * 12 11 10 22 22 S 1.83107 * 104.21842 * 347.70457 * 19 18 17 23 23 O 1.42105 * 109.47109 * 95.69914 * 22 19 18 24 24 H 0.96999 * 120.00594 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46819 * 60.00368 * 9 7 2 26 26 H 1.09001 * 109.47023 * 300.00367 * 9 7 2 27 27 H 1.08992 * 109.47028 * 59.99760 * 10 9 7 28 28 H 1.08999 * 109.46673 * 300.00263 * 10 9 7 29 29 H 1.08994 * 109.47240 * 294.85221 * 11 10 9 30 30 H 1.09004 * 109.47246 * 54.85680 * 11 10 9 31 31 H 1.08995 * 110.86990 * 250.54988 * 13 12 11 32 32 H 1.09000 * 110.86450 * 14.03501 * 13 12 11 33 33 H 1.09002 * 109.54032 * 344.44224 * 14 13 12 34 34 H 1.09001 * 109.61499 * 224.21805 * 14 13 12 35 35 H 1.09000 * 110.33612 * 175.18828 * 17 15 14 36 36 H 1.09006 * 110.33287 * 297.31356 * 17 15 14 37 37 H 1.09003 * 109.29100 * 283.98104 * 18 17 15 38 38 H 1.08997 * 109.78150 * 164.47331 * 18 17 15 39 39 H 1.09002 * 109.99893 * 311.82316 * 21 12 11 40 40 H 1.09006 * 109.99439 * 73.20398 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0023 11 6 5.5517 -2.6362 -0.0022 12 7 6.0414 -4.0158 0.1209 13 6 7.3262 -4.0539 0.8004 14 6 7.1186 -5.1446 1.8200 15 6 7.8606 -6.4383 1.3424 16 1 8.7676 -6.7250 1.8747 17 6 6.5803 -7.3767 1.4226 18 6 5.5086 -6.6983 0.5111 19 6 6.1378 -6.2337 -0.8000 20 1 5.8229 -6.8630 -1.6323 21 6 5.9015 -4.7217 -1.1155 22 16 7.9402 -6.3686 -0.5065 23 8 8.4099 -7.6126 -1.0076 24 1 -0.4851 0.8400 -0.0004 25 1 3.8752 -0.6803 0.8889 26 1 3.8745 -0.6798 -0.8911 27 1 3.6580 -3.1496 -0.8924 28 1 3.6586 -3.1508 0.8875 29 1 5.9150 -2.2036 -0.9343 30 1 5.9150 -2.0453 0.8386 31 1 8.1246 -4.3177 0.1068 32 1 7.5361 -3.1017 1.2876 33 1 6.0531 -5.3515 1.9208 34 1 7.5211 -4.8275 2.7821 35 1 6.8154 -8.3713 1.0437 36 1 6.2199 -7.4388 2.4494 37 1 5.0878 -5.8370 1.0299 38 1 4.7092 -7.4062 0.2921 39 1 4.8982 -4.5768 -1.5161 40 1 6.6442 -4.3699 -1.8316 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528784351.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:58 Heat of formation + Delta-G solvation = 1.771025 kcal Electronic energy + Delta-G solvation = -19640.644123 eV Core-core repulsion = 16776.314060 eV Total energy + Delta-G solvation = -2864.330063 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.84585 -36.05349 -35.67472 -33.60012 -32.68540 -31.63526 -28.46236 -26.49637 -25.86829 -22.85691 -22.52685 -21.31417 -20.10352 -19.78280 -17.44337 -16.93716 -16.53847 -15.93907 -15.58247 -14.91472 -14.53675 -14.20911 -14.14137 -13.96210 -13.30206 -13.05380 -12.91191 -12.62656 -12.14070 -11.96668 -11.84064 -11.67410 -11.49596 -11.41617 -11.18646 -10.97316 -10.67707 -10.40263 -10.25815 -9.91885 -9.77207 -9.62005 -9.53143 -9.17164 -8.53360 -8.31582 -7.98788 -6.03593 -4.01425 1.52080 2.26393 3.30078 3.37851 3.40430 3.58680 3.92941 4.19050 4.45169 4.47575 4.64305 4.85045 4.87758 5.07709 5.17914 5.19466 5.30367 5.33290 5.47589 5.52031 5.62822 5.67621 5.73158 5.83179 5.86697 5.94111 5.96548 6.10733 6.17893 6.48215 6.53548 6.58237 6.92946 7.20116 7.35972 7.41475 7.51080 7.81227 8.55549 9.02325 9.59094 11.10058 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.039079 B = 0.004041 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.321594 B = 6927.962311 C = 7041.178827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.518 4.518 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.098 4.098 11 C 0.057 3.943 12 N -0.576 5.576 13 C 0.052 3.948 14 C -0.112 4.112 15 C -0.390 4.390 16 H 0.133 0.867 17 C -0.137 4.137 18 C -0.119 4.119 19 C -0.378 4.378 20 H 0.108 0.892 21 C 0.105 3.895 22 S 1.192 4.808 23 O -0.868 6.868 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.009 0.991 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.118 0.882 38 H 0.064 0.936 39 H 0.099 0.901 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.810 -8.621 1.624 19.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.136 4.136 11 C -0.069 4.069 12 N -0.301 5.301 13 C -0.076 4.076 14 C -0.151 4.151 15 C -0.508 4.508 16 H 0.151 0.849 17 C -0.175 4.175 18 C -0.157 4.157 19 C -0.498 4.498 20 H 0.127 0.873 21 C -0.025 4.025 22 S 1.394 4.606 23 O -0.863 6.863 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.132 0.868 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.135 0.865 38 H 0.082 0.918 39 H 0.117 0.883 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 18.240 -8.819 1.168 20.294 hybrid contribution -0.419 -0.581 0.272 0.766 sum 17.821 -9.400 1.440 20.200 Atomic orbital electron populations 1.69919 1.06345 1.26829 1.51367 1.25053 0.94709 0.99186 0.94674 0.86768 0.80337 0.83665 0.78408 1.20398 1.21510 1.19002 1.21153 0.89619 0.94370 1.50481 0.91121 1.19558 0.97095 0.92508 0.96037 1.21499 0.91326 0.99270 1.01548 1.22407 0.97942 0.86242 1.00331 1.58651 1.26671 1.16985 1.27763 1.21945 0.89004 1.00372 0.96311 1.22764 1.02826 0.91073 0.98422 1.29772 1.00934 1.02501 1.17612 0.84932 1.24031 0.93617 0.98006 1.01864 1.22364 0.97867 1.02246 0.93206 1.27878 1.17276 1.01865 1.02779 0.87340 1.21605 1.02975 0.88386 0.89497 1.71535 0.91249 1.09074 0.88743 1.93043 1.72940 1.48286 1.72024 0.92800 0.96690 0.97312 0.93025 0.92048 0.94649 0.91048 0.92931 0.89084 0.86755 0.91831 0.92490 0.89975 0.86462 0.91764 0.88333 0.93892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.67 13.96 55.43 0.77 -26.89 16 2 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 3 Si 0.88 21.18 27.47 -169.99 -4.67 16.51 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 7 C -0.52 -14.38 9.66 -34.44 -0.33 -14.71 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.43 16 10 C -0.10 -1.74 5.17 -26.73 -0.14 -1.88 16 11 C 0.06 0.74 5.05 -3.82 -0.02 0.72 16 12 N -0.58 -6.10 2.15 -238.23 -0.51 -6.61 16 13 C 0.05 0.42 5.68 -5.76 -0.03 0.39 16 14 C -0.11 -0.97 5.13 -25.92 -0.13 -1.10 16 15 C -0.39 -3.63 5.89 -21.49 -0.13 -3.76 16 16 H 0.13 1.11 8.14 -51.93 -0.42 0.68 16 17 C -0.14 -1.47 5.54 -21.72 -0.12 -1.59 16 18 C -0.12 -1.32 5.41 -25.19 -0.14 -1.46 16 19 C -0.38 -4.06 3.98 -25.16 -0.10 -4.16 16 20 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 21 C 0.11 1.08 5.19 -4.11 -0.02 1.06 16 22 S 1.19 12.42 10.42 -107.50 -1.12 11.30 16 23 O -0.87 -14.47 18.11 -35.23 -0.64 -15.11 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 26 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 27 H 0.05 0.92 6.92 -51.93 -0.36 0.56 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.04 0.44 7.99 -51.93 -0.41 0.03 16 30 H 0.07 0.89 7.26 -51.93 -0.38 0.51 16 31 H 0.05 0.33 5.40 -32.63 -0.18 0.15 16 32 H 0.09 0.66 7.17 -51.93 -0.37 0.29 16 33 H 0.11 1.15 3.94 -51.93 -0.20 0.94 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 37 H 0.12 1.34 4.71 -51.93 -0.24 1.10 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 1.13 6.63 -51.93 -0.34 0.79 16 40 H 0.04 0.36 7.98 -51.93 -0.41 -0.06 16 LS Contribution 305.00 15.07 4.60 4.60 Total: -1.00 -34.43 305.00 -9.15 -43.58 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -6.21 Total: -2.22 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: -1.37 Total: -25.15 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.26 Total: -33.51 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.64 Total: -15.11 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Atomic # 16 Polarization: 12.42 SS G_CDS: -1.12 Total: 11.30 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.43 -9.15 -43.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528784351.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.349 kcal (2) G-P(sol) polarization free energy of solvation -34.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds