Wall clock time and date at job start Mon Mar 30 2020 04:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99449 * 2 1 4 4 H 1.48500 * 109.47327 * 270.00079 * 3 2 1 5 5 H 1.48500 * 109.47345 * 30.00213 * 3 2 1 6 6 H 1.48506 * 109.46692 * 150.00198 * 3 2 1 7 7 C 1.37875 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99830 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99745 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47047 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46937 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.46682 * 174.85533 * 11 10 9 13 13 C 1.45395 * 110.99856 * 209.74073 * 12 11 10 14 14 C 1.50748 * 102.31985 * 132.29095 * 13 12 11 15 15 C 1.56601 * 109.03342 * 104.30953 * 14 13 12 16 16 H 1.09005 * 117.55994 * 107.72327 * 15 14 13 17 17 C 1.58941 * 95.20367 * 234.79903 * 15 14 13 18 18 C 1.56194 * 105.47700 * 56.46967 * 17 15 14 19 19 C 1.52667 * 110.51824 * 44.06614 * 18 17 15 20 20 H 1.08996 * 111.16136 * 107.77090 * 19 18 17 21 21 C 1.43056 * 111.00176 * 75.70889 * 12 11 10 22 22 S 1.83107 * 104.21842 * 347.70457 * 19 18 17 23 23 O 1.42105 * 109.47109 * 95.69914 * 22 19 18 24 24 H 0.96999 * 120.00594 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46819 * 60.00368 * 9 7 2 26 26 H 1.09001 * 109.47023 * 300.00367 * 9 7 2 27 27 H 1.08992 * 109.47028 * 59.99760 * 10 9 7 28 28 H 1.08999 * 109.46673 * 300.00263 * 10 9 7 29 29 H 1.08994 * 109.47240 * 294.85221 * 11 10 9 30 30 H 1.09004 * 109.47246 * 54.85680 * 11 10 9 31 31 H 1.08995 * 110.86990 * 250.54988 * 13 12 11 32 32 H 1.09000 * 110.86450 * 14.03501 * 13 12 11 33 33 H 1.09002 * 109.54032 * 344.44224 * 14 13 12 34 34 H 1.09001 * 109.61499 * 224.21805 * 14 13 12 35 35 H 1.09000 * 110.33612 * 175.18828 * 17 15 14 36 36 H 1.09006 * 110.33287 * 297.31356 * 17 15 14 37 37 H 1.09003 * 109.29100 * 283.98104 * 18 17 15 38 38 H 1.08997 * 109.78150 * 164.47331 * 18 17 15 39 39 H 1.09002 * 109.99893 * 311.82316 * 21 12 11 40 40 H 1.09006 * 109.99439 * 73.20398 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0023 11 6 5.5517 -2.6362 -0.0022 12 7 6.0414 -4.0158 0.1209 13 6 7.3262 -4.0539 0.8004 14 6 7.1186 -5.1446 1.8200 15 6 7.8606 -6.4383 1.3424 16 1 8.7676 -6.7250 1.8747 17 6 6.5803 -7.3767 1.4226 18 6 5.5086 -6.6983 0.5111 19 6 6.1378 -6.2337 -0.8000 20 1 5.8229 -6.8630 -1.6323 21 6 5.9015 -4.7217 -1.1155 22 16 7.9402 -6.3686 -0.5065 23 8 8.4099 -7.6126 -1.0076 24 1 -0.4851 0.8400 -0.0004 25 1 3.8752 -0.6803 0.8889 26 1 3.8745 -0.6798 -0.8911 27 1 3.6580 -3.1496 -0.8924 28 1 3.6586 -3.1508 0.8875 29 1 5.9150 -2.2036 -0.9343 30 1 5.9150 -2.0453 0.8386 31 1 8.1246 -4.3177 0.1068 32 1 7.5361 -3.1017 1.2876 33 1 6.0531 -5.3515 1.9208 34 1 7.5211 -4.8275 2.7821 35 1 6.8154 -8.3713 1.0437 36 1 6.2199 -7.4388 2.4494 37 1 5.0878 -5.8370 1.0299 38 1 4.7092 -7.4062 0.2921 39 1 4.8982 -4.5768 -1.5161 40 1 6.6442 -4.3699 -1.8316 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528784351.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:58 Heat of formation + Delta-G solvation = -22.001217 kcal Electronic energy + Delta-G solvation = -19641.674965 eV Core-core repulsion = 16776.314060 eV Total energy + Delta-G solvation = -2865.360905 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.67840 -37.08182 -36.80409 -35.31993 -33.47718 -33.40548 -29.76886 -27.33378 -27.22538 -24.09830 -23.52258 -22.25311 -21.53842 -20.67403 -18.85501 -18.28560 -17.65222 -16.83388 -16.44494 -16.27656 -15.73702 -15.48954 -15.29390 -14.88677 -14.67591 -14.21896 -14.04694 -13.92492 -13.56047 -13.24223 -12.85271 -12.78133 -12.58750 -12.39983 -12.27643 -12.16566 -12.02844 -11.71630 -11.53561 -11.27018 -11.17856 -11.07045 -10.80944 -10.69611 -10.63879 -9.23045 -8.81687 -8.22418 -6.26221 0.67240 1.42054 1.42487 1.44769 1.56775 2.43315 2.70508 3.07397 3.13925 3.36348 3.60504 3.87659 3.97183 4.07236 4.23166 4.28906 4.47085 4.50228 4.59233 4.68996 4.74107 4.77668 4.88270 4.93096 4.95541 4.99632 5.07870 5.13182 5.17735 5.26712 5.28835 5.36235 5.67712 5.74894 5.77328 5.79363 6.31002 6.41438 6.68006 6.84167 7.38649 8.94909 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.039079 B = 0.004041 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.321594 B = 6927.962311 C = 7041.178827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.003 4.003 3 Si 0.956 3.044 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.237 1.237 7 C -0.530 4.530 8 H 0.024 0.976 9 C -0.012 4.012 10 C -0.091 4.091 11 C 0.070 3.930 12 N -0.583 5.583 13 C 0.048 3.952 14 C -0.109 4.109 15 C -0.376 4.376 16 H 0.150 0.850 17 C -0.140 4.140 18 C -0.121 4.121 19 C -0.379 4.379 20 H 0.099 0.901 21 C 0.105 3.895 22 S 1.232 4.768 23 O -0.933 6.933 24 H 0.264 0.736 25 H 0.024 0.976 26 H 0.020 0.980 27 H 0.039 0.961 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.034 0.966 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.052 0.948 39 H 0.082 0.918 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.905 -6.823 2.301 22.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.199 4.199 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.217 1.217 6 H -0.160 1.160 7 C -0.568 4.568 8 H 0.042 0.958 9 C -0.050 4.050 10 C -0.130 4.130 11 C -0.057 4.057 12 N -0.308 5.308 13 C -0.079 4.079 14 C -0.148 4.148 15 C -0.495 4.495 16 H 0.168 0.832 17 C -0.179 4.179 18 C -0.159 4.159 19 C -0.499 4.499 20 H 0.117 0.883 21 C -0.025 4.025 22 S 1.436 4.564 23 O -0.928 6.928 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.130 0.870 33 H 0.118 0.882 34 H 0.102 0.898 35 H 0.053 0.947 36 H 0.112 0.888 37 H 0.135 0.865 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 21.366 -7.053 1.830 22.574 hybrid contribution -1.516 -1.237 0.126 1.961 sum 19.850 -8.290 1.956 21.600 Atomic orbital electron populations 1.70102 1.08624 1.28033 1.53307 1.26130 0.95596 1.03903 0.94274 0.85579 0.79725 0.77687 0.79134 1.19291 1.21663 1.15976 1.21601 0.92845 0.92663 1.49677 0.95765 1.19525 0.93136 0.95698 0.96636 1.21345 0.95290 0.96007 1.00318 1.22157 0.93965 0.87774 1.01760 1.58470 1.28598 1.15692 1.28059 1.22125 0.88173 1.01297 0.96334 1.22702 1.01857 0.90547 0.99647 1.29802 1.00931 1.02673 1.16114 0.83232 1.24062 0.94440 0.97140 1.02242 1.22395 0.97894 1.01981 0.93585 1.27853 1.17346 1.02390 1.02293 0.88269 1.21617 1.03028 0.87707 0.90116 1.70758 0.89853 1.06689 0.89055 1.92939 1.74652 1.50736 1.74491 0.92753 0.95795 0.96191 0.94177 0.93628 0.93279 0.89502 0.90661 0.86962 0.88184 0.89833 0.94735 0.88839 0.86465 0.92943 0.89995 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.31 13.96 21.45 0.30 -60.01 16 2 C 0.00 -0.20 5.47 84.65 0.46 0.27 16 3 Si 0.96 42.79 27.47 68.60 1.88 44.67 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 6 H -0.24 -9.44 6.54 99.48 0.65 -8.79 16 7 C -0.53 -29.95 9.66 25.60 0.25 -29.70 16 8 H 0.02 1.53 7.99 -2.91 -0.02 1.51 16 9 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 10 C -0.09 -3.12 5.17 30.59 0.16 -2.97 16 11 C 0.07 1.58 5.05 86.30 0.44 2.01 16 12 N -0.58 -10.62 2.15 -907.62 -1.95 -12.56 16 13 C 0.05 0.58 5.68 85.86 0.49 1.06 16 14 C -0.11 -1.49 5.13 31.12 0.16 -1.33 16 15 C -0.38 -6.01 5.89 33.99 0.20 -5.81 16 16 H 0.15 1.98 8.14 -2.38 -0.02 1.96 16 17 C -0.14 -2.89 5.54 33.84 0.19 -2.70 16 18 C -0.12 -2.65 5.41 31.59 0.17 -2.48 16 19 C -0.38 -7.84 3.98 31.61 0.13 -7.72 16 20 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 21 C 0.10 1.95 5.19 88.14 0.46 2.40 16 22 S 1.23 23.61 10.42 -56.49 -0.59 23.02 16 23 O -0.93 -30.88 18.11 -148.98 -2.70 -33.58 16 24 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 25 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 26 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 27 H 0.04 1.43 6.92 -2.39 -0.02 1.42 16 28 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.05 1.00 7.99 -2.39 -0.02 0.98 16 30 H 0.09 1.74 7.26 -2.38 -0.02 1.72 16 31 H 0.08 0.57 5.40 -14.67 -0.08 0.50 16 32 H 0.11 0.99 7.17 -2.39 -0.02 0.97 16 33 H 0.10 1.75 3.94 -2.39 -0.01 1.74 16 34 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.03 0.86 8.10 -2.39 -0.02 0.84 16 36 H 0.09 1.70 8.04 -2.38 -0.02 1.68 16 37 H 0.12 2.61 4.71 -2.39 -0.01 2.59 16 38 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.08 1.82 6.63 -2.39 -0.02 1.81 16 40 H 0.07 0.94 7.98 -2.38 -0.02 0.92 16 Total: -1.00 -77.62 305.00 1.06 -76.56 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.90 Total: 9.25 kcal Atomic # 6 Polarization: -50.56 SS G_CDS: 3.22 Total: -47.34 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -1.65 Total: -72.58 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -2.70 Total: -33.58 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.88 Total: 44.67 kcal Atomic # 16 Polarization: 23.61 SS G_CDS: -0.59 Total: 23.02 kcal Total: -77.62 1.06 -76.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528784351.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.563 kcal (2) G-P(sol) polarization free energy of solvation -77.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds