Wall clock time and date at job start Mon Mar 30 2020 05:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47159 * 2 1 4 4 C 1.52997 * 109.47153 * 120.00132 * 2 1 3 5 5 C 1.50706 * 109.47238 * 184.99569 * 4 2 1 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47288 * 59.99994 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46819 * 299.99648 * 9 7 5 13 13 N 1.46903 * 109.46949 * 240.00042 * 2 1 3 14 14 C 1.45471 * 111.00052 * 306.04765 * 13 2 1 15 15 C 1.48844 * 116.68465 * 217.13884 * 14 13 2 16 16 C 1.56382 * 106.54708 * 298.50858 * 15 14 13 17 17 H 1.09000 * 111.34997 * 194.84261 * 16 15 14 18 18 C 1.52835 * 113.44545 * 321.42730 * 16 15 14 19 19 C 1.54590 * 111.43614 * 125.35469 * 18 16 15 20 20 C 1.58921 * 105.23230 * 315.58487 * 19 18 16 21 21 H 1.08997 * 118.76091 * 177.60975 * 20 19 18 22 22 C 1.44139 * 110.99538 * 60.34839 * 13 2 1 23 23 S 1.82934 * 104.47478 * 73.29719 * 16 15 14 24 24 O 1.42102 * 109.46868 * 12.20433 * 23 16 15 25 25 H 1.08993 * 109.47376 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46634 * 299.99965 * 1 2 3 27 27 H 1.09000 * 109.47090 * 59.99702 * 1 2 3 28 28 H 1.09001 * 109.46832 * 64.99883 * 4 2 1 29 29 H 1.09000 * 109.47611 * 305.00180 * 4 2 1 30 30 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 31 31 H 1.08999 * 108.00652 * 338.95649 * 14 13 2 32 32 H 1.09002 * 108.00755 * 95.35363 * 14 13 2 33 33 H 1.08996 * 110.03447 * 57.76721 * 15 14 13 34 34 H 1.08996 * 110.03031 * 179.14919 * 15 14 13 35 35 H 1.08999 * 109.09783 * 245.87483 * 18 16 15 36 36 H 1.08998 * 109.09878 * 4.94356 * 18 16 15 37 37 H 1.08999 * 110.28897 * 74.52591 * 19 18 16 38 38 H 1.08999 * 110.28863 * 196.54895 * 19 18 16 39 39 H 1.08999 * 109.53350 * 255.17272 * 22 13 2 40 40 H 1.08993 * 109.53947 * 15.41459 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6150 1.3126 6 1 4.0789 -0.0856 0.5395 7 6 4.2305 -1.1936 2.3576 8 7 3.5765 -1.8388 3.2988 9 14 6.0921 -1.0613 2.4366 10 1 6.4846 0.3695 2.4971 11 1 6.5871 -1.7615 3.6490 12 1 6.6845 -1.6865 1.2268 13 7 2.0196 -0.6925 -1.1995 14 6 1.4399 -2.0224 -1.3068 15 6 2.3263 -3.0977 -1.8297 16 6 2.7299 -2.6761 -3.2805 17 1 3.1592 -3.5126 -3.8320 18 6 1.5922 -2.0193 -4.0616 19 6 2.0084 -0.6348 -4.6091 20 6 2.7603 0.0812 -3.4060 21 1 3.1865 1.0711 -3.5686 22 6 1.5641 -0.0341 -2.3981 23 16 3.9246 -1.3110 -3.0443 24 8 4.3183 -1.2570 -1.6800 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 1.7516 -1.7715 1.2055 29 1 1.6054 -0.2619 2.1370 30 1 4.0610 -2.2456 4.0342 31 1 1.0960 -2.3210 -0.3165 32 1 0.5682 -1.9584 -1.9581 33 1 3.2154 -3.1853 -1.2053 34 1 1.7900 -4.0464 -1.8505 35 1 1.3137 -2.6635 -4.8956 36 1 0.7320 -1.8968 -3.4035 37 1 2.6805 -0.7510 -5.4593 38 1 1.1273 -0.0629 -4.9000 39 1 0.7610 -0.6157 -2.8506 40 1 1.1990 0.9625 -2.1502 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528785091.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:49 Heat of formation + Delta-G solvation = 35.538874 kcal Electronic energy + Delta-G solvation = -21121.225212 eV Core-core repulsion = 18258.359433 eV Total energy + Delta-G solvation = -2862.865779 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.07584 -35.87453 -34.65055 -32.72758 -32.50327 -30.47358 -27.23991 -26.42810 -25.55139 -23.67049 -22.21430 -21.35850 -19.81245 -18.25790 -16.94178 -15.97905 -15.86545 -15.45011 -15.19082 -14.56268 -14.20931 -13.63883 -13.42624 -12.98892 -12.88944 -12.58195 -12.15296 -11.79142 -11.57578 -11.50386 -11.33075 -11.25038 -11.04256 -10.95281 -10.54145 -10.52877 -10.42375 -10.24220 -10.04837 -9.95242 -9.71234 -8.99675 -8.94067 -8.71531 -8.02127 -7.55227 -7.35225 -5.65600 -3.58106 2.43378 3.08211 3.57932 3.59156 3.69662 4.41933 4.58960 4.80254 4.82074 5.00406 5.08154 5.19466 5.29622 5.50434 5.57149 5.68375 5.72358 5.81263 5.82686 5.90743 5.92388 6.00144 6.03571 6.08085 6.19517 6.25489 6.31501 6.35434 6.46988 6.62543 6.66986 6.86204 7.04888 7.62343 7.76478 7.96556 8.10805 8.38659 8.82179 9.51415 10.02206 11.47548 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.022242 B = 0.008416 C = 0.007190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.579032 B = 3326.135996 C = 3893.491533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.086 3.914 3 H 0.070 0.930 4 C 0.031 3.969 5 C -0.460 4.460 6 H 0.072 0.928 7 C 0.044 3.956 8 N -0.918 5.918 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.297 1.297 12 H -0.276 1.276 13 N -0.465 5.465 14 C 0.025 3.975 15 C -0.098 4.098 16 C -0.414 4.414 17 H 0.112 0.888 18 C -0.123 4.123 19 C -0.116 4.116 20 C -0.391 4.391 21 H 0.130 0.870 22 C 0.017 3.983 23 S 1.215 4.785 24 O -0.759 6.759 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.039 0.961 28 H 0.016 0.984 29 H 0.014 0.986 30 H 0.253 0.747 31 H 0.069 0.931 32 H 0.034 0.966 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.696 0.461 -19.531 19.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.022 4.022 3 H 0.088 0.912 4 C -0.006 4.006 5 C -0.499 4.499 6 H 0.090 0.910 7 C -0.153 4.153 8 N -0.561 5.561 9 Si 0.721 3.279 10 H -0.210 1.210 11 H -0.223 1.223 12 H -0.202 1.202 13 N -0.187 5.187 14 C -0.103 4.103 15 C -0.137 4.137 16 C -0.528 4.528 17 H 0.130 0.870 18 C -0.160 4.160 19 C -0.155 4.155 20 C -0.507 4.507 21 H 0.148 0.852 22 C -0.113 4.113 23 S 1.407 4.593 24 O -0.754 6.754 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.034 0.966 29 H 0.033 0.967 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.080 0.328 -19.029 19.145 hybrid contribution -1.846 0.034 1.384 2.308 sum -3.926 0.362 -17.644 18.079 Atomic orbital electron populations 1.22627 0.99798 1.01203 1.00745 1.22069 0.89551 0.98373 0.92167 0.91166 1.19206 0.97152 0.94883 0.89323 1.21216 0.91158 1.31501 1.06004 0.91006 1.24956 0.97763 0.96369 0.96246 1.69984 1.34977 1.38322 1.12783 0.86648 0.87052 0.77622 0.76554 1.20959 1.22298 1.20163 1.63121 1.53603 1.01031 1.00942 1.21604 0.95439 0.91912 1.01358 1.21332 1.02172 0.97177 0.92975 1.27930 1.11539 1.13183 1.00193 0.87007 1.22170 0.99114 0.95179 0.99537 1.23199 1.00405 0.94850 0.97095 1.30027 1.09282 1.11490 0.99904 0.85197 1.23619 0.95209 1.00068 0.92423 1.71398 0.93985 0.88390 1.05537 1.93461 1.68183 1.80390 1.33329 0.93076 0.92480 0.94191 0.96599 0.96738 0.93805 0.91222 0.94872 0.88719 0.92095 0.92008 0.90014 0.91001 0.91198 0.91038 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.38 8.51 37.16 0.32 -3.06 16 2 C 0.09 1.89 2.09 -67.71 -0.14 1.75 16 3 H 0.07 1.61 8.09 -51.93 -0.42 1.19 16 4 C 0.03 0.86 4.36 -27.88 -0.12 0.73 16 5 C -0.46 -14.01 8.66 -34.44 -0.30 -14.31 16 6 H 0.07 2.26 6.94 -52.49 -0.36 1.89 16 7 C 0.04 1.36 5.46 -17.82 -0.10 1.27 16 8 N -0.92 -29.69 13.29 55.43 0.74 -28.95 16 9 Si 0.89 24.45 29.54 -169.99 -5.02 19.42 16 10 H -0.28 -7.61 7.11 56.52 0.40 -7.21 16 11 H -0.30 -7.99 7.11 56.52 0.40 -7.58 16 12 H -0.28 -7.62 7.11 56.52 0.40 -7.22 16 13 N -0.47 -9.25 1.99 -230.05 -0.46 -9.70 16 14 C 0.02 0.47 3.25 -6.63 -0.02 0.44 16 15 C -0.10 -1.70 5.75 -26.95 -0.16 -1.86 16 16 C -0.41 -5.32 4.12 -25.00 -0.10 -5.42 16 17 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 18 C -0.12 -1.35 5.30 -25.98 -0.14 -1.48 16 19 C -0.12 -1.12 5.53 -22.61 -0.13 -1.24 16 20 C -0.39 -5.02 5.97 -21.36 -0.13 -5.15 16 21 H 0.13 1.52 8.14 -51.93 -0.42 1.10 16 22 C 0.02 0.26 3.81 -3.22 -0.01 0.25 16 23 S 1.22 16.80 13.49 -107.50 -1.45 15.35 16 24 O -0.76 -16.71 13.33 -35.23 -0.47 -17.18 16 25 H 0.05 0.92 6.56 -51.93 -0.34 0.58 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.04 0.63 6.80 -51.93 -0.35 0.28 16 28 H 0.02 0.47 6.22 -51.93 -0.32 0.14 16 29 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.25 7.83 8.31 -40.82 -0.34 7.49 16 31 H 0.07 1.50 4.83 -51.93 -0.25 1.25 16 32 H 0.03 0.54 4.57 -51.93 -0.24 0.31 16 33 H 0.09 2.04 6.99 -51.93 -0.36 1.67 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 1.03 3.51 -51.93 -0.18 0.85 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.64 8.03 -51.93 -0.42 0.22 16 39 H 0.07 1.02 3.42 -51.93 -0.18 0.84 16 40 H 0.05 0.81 6.82 -51.93 -0.35 0.46 16 LS Contribution 293.84 15.07 4.43 4.43 Total: -1.00 -37.21 293.84 -9.14 -46.35 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -5.88 Total: -1.65 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: -1.02 Total: -28.08 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.28 Total: -38.65 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.47 Total: -17.18 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.02 Total: 19.42 kcal Atomic # 16 Polarization: 16.80 SS G_CDS: -1.45 Total: 15.35 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -37.21 -9.14 -46.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528785091.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.890 kcal (2) G-P(sol) polarization free energy of solvation -37.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds