Wall clock time and date at job start Mon Mar 30 2020 05:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47159 * 2 1 4 4 C 1.52997 * 109.47153 * 120.00132 * 2 1 3 5 5 C 1.50706 * 109.47238 * 184.99569 * 4 2 1 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47288 * 59.99994 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46819 * 299.99648 * 9 7 5 13 13 N 1.46903 * 109.46949 * 240.00042 * 2 1 3 14 14 C 1.45471 * 111.00052 * 306.04765 * 13 2 1 15 15 C 1.48844 * 116.68465 * 217.13884 * 14 13 2 16 16 C 1.56382 * 106.54708 * 298.50858 * 15 14 13 17 17 H 1.09000 * 111.34997 * 194.84261 * 16 15 14 18 18 C 1.52835 * 113.44545 * 321.42730 * 16 15 14 19 19 C 1.54590 * 111.43614 * 125.35469 * 18 16 15 20 20 C 1.58921 * 105.23230 * 315.58487 * 19 18 16 21 21 H 1.08997 * 118.76091 * 177.60975 * 20 19 18 22 22 C 1.44139 * 110.99538 * 60.34839 * 13 2 1 23 23 S 1.82934 * 104.47478 * 73.29719 * 16 15 14 24 24 O 1.42102 * 109.46868 * 12.20433 * 23 16 15 25 25 H 1.08993 * 109.47376 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46634 * 299.99965 * 1 2 3 27 27 H 1.09000 * 109.47090 * 59.99702 * 1 2 3 28 28 H 1.09001 * 109.46832 * 64.99883 * 4 2 1 29 29 H 1.09000 * 109.47611 * 305.00180 * 4 2 1 30 30 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 31 31 H 1.08999 * 108.00652 * 338.95649 * 14 13 2 32 32 H 1.09002 * 108.00755 * 95.35363 * 14 13 2 33 33 H 1.08996 * 110.03447 * 57.76721 * 15 14 13 34 34 H 1.08996 * 110.03031 * 179.14919 * 15 14 13 35 35 H 1.08999 * 109.09783 * 245.87483 * 18 16 15 36 36 H 1.08998 * 109.09878 * 4.94356 * 18 16 15 37 37 H 1.08999 * 110.28897 * 74.52591 * 19 18 16 38 38 H 1.08999 * 110.28863 * 196.54895 * 19 18 16 39 39 H 1.08999 * 109.53350 * 255.17272 * 22 13 2 40 40 H 1.08993 * 109.53947 * 15.41459 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6150 1.3126 6 1 4.0789 -0.0856 0.5395 7 6 4.2305 -1.1936 2.3576 8 7 3.5765 -1.8388 3.2988 9 14 6.0921 -1.0613 2.4366 10 1 6.4846 0.3695 2.4971 11 1 6.5871 -1.7615 3.6490 12 1 6.6845 -1.6865 1.2268 13 7 2.0196 -0.6925 -1.1995 14 6 1.4399 -2.0224 -1.3068 15 6 2.3263 -3.0977 -1.8297 16 6 2.7299 -2.6761 -3.2805 17 1 3.1592 -3.5126 -3.8320 18 6 1.5922 -2.0193 -4.0616 19 6 2.0084 -0.6348 -4.6091 20 6 2.7603 0.0812 -3.4060 21 1 3.1865 1.0711 -3.5686 22 6 1.5641 -0.0341 -2.3981 23 16 3.9246 -1.3110 -3.0443 24 8 4.3183 -1.2570 -1.6800 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 1.7516 -1.7715 1.2055 29 1 1.6054 -0.2619 2.1370 30 1 4.0610 -2.2456 4.0342 31 1 1.0960 -2.3210 -0.3165 32 1 0.5682 -1.9584 -1.9581 33 1 3.2154 -3.1853 -1.2053 34 1 1.7900 -4.0464 -1.8505 35 1 1.3137 -2.6635 -4.8956 36 1 0.7320 -1.8968 -3.4035 37 1 2.6805 -0.7510 -5.4593 38 1 1.1273 -0.0629 -4.9000 39 1 0.7610 -0.6157 -2.8506 40 1 1.1990 0.9625 -2.1502 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528785091.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:48 Heat of formation + Delta-G solvation = 8.853349 kcal Electronic energy + Delta-G solvation = -21122.382383 eV Core-core repulsion = 18258.359433 eV Total energy + Delta-G solvation = -2864.022950 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.43717 -37.25201 -36.06071 -34.72956 -33.95553 -32.16995 -29.25619 -27.65926 -26.73110 -25.46249 -23.91732 -22.62536 -21.11769 -19.70291 -18.31720 -18.18157 -17.15491 -16.89285 -16.42914 -16.33914 -15.77678 -15.12943 -14.73591 -14.47228 -14.29731 -13.95825 -13.80407 -13.66093 -13.25871 -13.07106 -12.74129 -12.63522 -12.51251 -12.44487 -12.40013 -12.23033 -11.93439 -11.66844 -11.40602 -11.39844 -11.20741 -11.05125 -10.88851 -10.46196 -10.13893 -8.95037 -8.59716 -8.08747 -6.07488 1.30973 1.35272 1.37831 1.47436 2.03559 2.48546 3.12511 3.27815 3.38188 3.68568 3.89299 4.00901 4.04785 4.15010 4.21865 4.29171 4.40835 4.45560 4.53053 4.61025 4.70465 4.80991 4.84738 4.89230 4.97705 5.04666 5.10270 5.18010 5.20349 5.26586 5.32972 5.43300 5.46379 5.51034 5.68956 5.92769 6.30120 6.39048 6.55586 7.06098 7.56072 9.04215 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.022242 B = 0.008416 C = 0.007190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.579032 B = 3326.135996 C = 3893.491533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.093 3.907 3 H 0.057 0.943 4 C 0.040 3.960 5 C -0.462 4.462 6 H 0.059 0.941 7 C -0.015 4.015 8 N -0.951 5.951 9 Si 0.955 3.045 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.282 1.282 13 N -0.486 5.486 14 C 0.028 3.972 15 C -0.104 4.104 16 C -0.396 4.396 17 H 0.146 0.854 18 C -0.123 4.123 19 C -0.104 4.104 20 C -0.388 4.388 21 H 0.144 0.856 22 C 0.006 3.994 23 S 1.247 4.753 24 O -0.855 6.855 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.072 0.928 28 H -0.012 1.012 29 H -0.014 1.014 30 H 0.254 0.746 31 H 0.026 0.974 32 H 0.066 0.934 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.319 0.909 -23.563 23.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.016 4.016 3 H 0.075 0.925 4 C 0.003 3.997 5 C -0.501 4.501 6 H 0.077 0.923 7 C -0.208 4.208 8 N -0.596 5.596 9 Si 0.782 3.218 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.208 1.208 13 N -0.208 5.208 14 C -0.100 4.100 15 C -0.143 4.143 16 C -0.512 4.512 17 H 0.164 0.836 18 C -0.160 4.160 19 C -0.143 4.143 20 C -0.506 4.506 21 H 0.162 0.838 22 C -0.123 4.123 23 S 1.444 4.556 24 O -0.850 6.850 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.006 0.994 29 H 0.005 0.995 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.131 0.869 38 H 0.107 0.893 39 H 0.113 0.887 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.680 0.788 -23.064 23.233 hybrid contribution -1.743 -0.129 2.549 3.090 sum -4.423 0.659 -20.516 20.997 Atomic orbital electron populations 1.22461 0.96730 1.01587 1.02299 1.21724 0.91968 0.96753 0.91110 0.92521 1.19026 0.95723 0.93650 0.91317 1.21414 0.92745 1.30688 1.05226 0.92308 1.25788 1.02554 0.96333 0.96142 1.70109 1.36668 1.39365 1.13415 0.85639 0.81486 0.78196 0.76434 1.19606 1.21087 1.20751 1.63072 1.54538 1.01688 1.01483 1.21659 0.96795 0.91795 0.99709 1.21244 0.99858 0.97653 0.95515 1.27890 1.11926 1.13637 0.97787 0.83629 1.22220 0.97129 0.96636 1.00028 1.23228 1.01544 0.93112 0.96404 1.29986 1.07744 1.11888 1.00978 0.83770 1.23900 0.97246 0.99785 0.91366 1.70245 0.94204 0.88765 1.02418 1.93344 1.71956 1.82655 1.37005 0.93224 0.92589 0.90894 0.99375 0.99532 0.93739 0.95559 0.91648 0.94023 0.90716 0.88468 0.91604 0.86930 0.89292 0.88686 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.25 8.51 71.98 0.61 -5.64 16 2 C 0.09 4.22 2.09 44.91 0.09 4.32 16 3 H 0.06 2.69 8.09 -2.39 -0.02 2.67 16 4 C 0.04 2.33 4.36 29.85 0.13 2.46 16 5 C -0.46 -29.69 8.66 25.60 0.22 -29.47 16 6 H 0.06 3.89 6.94 -2.91 -0.02 3.87 16 7 C -0.01 -0.95 5.46 84.65 0.46 -0.49 16 8 N -0.95 -64.27 13.29 21.45 0.28 -63.99 16 9 Si 0.96 52.21 29.54 68.60 2.03 54.24 16 10 H -0.27 -14.12 7.11 99.48 0.71 -13.41 16 11 H -0.29 -14.92 7.11 99.48 0.71 -14.22 16 12 H -0.28 -15.55 7.11 99.48 0.71 -14.84 16 13 N -0.49 -19.51 1.99 -881.76 -1.76 -21.26 16 14 C 0.03 1.07 3.25 85.25 0.28 1.35 16 15 C -0.10 -3.64 5.75 30.45 0.18 -3.47 16 16 C -0.40 -8.99 4.12 31.72 0.13 -8.86 16 17 H 0.15 2.39 8.14 -2.39 -0.02 2.37 16 18 C -0.12 -2.02 5.30 31.08 0.16 -1.86 16 19 C -0.10 -1.35 5.53 33.27 0.18 -1.16 16 20 C -0.39 -8.65 5.97 34.07 0.20 -8.44 16 21 H 0.14 2.88 8.14 -2.39 -0.02 2.86 16 22 C 0.01 0.17 3.81 88.17 0.34 0.51 16 23 S 1.25 32.79 13.49 -56.49 -0.76 32.02 16 24 O -0.85 -39.09 13.33 -148.98 -1.99 -41.08 16 25 H 0.05 1.81 6.56 -2.39 -0.02 1.79 16 26 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.07 2.17 6.80 -2.39 -0.02 2.15 16 28 H -0.01 -0.76 6.22 -2.39 -0.01 -0.77 16 29 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 30 H 0.25 16.31 8.31 -92.71 -0.77 15.54 16 31 H 0.03 1.19 4.83 -2.39 -0.01 1.18 16 32 H 0.07 2.01 4.57 -2.39 -0.01 2.00 16 33 H 0.04 1.91 6.99 -2.39 -0.02 1.89 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.33 3.51 -2.39 -0.01 1.32 16 37 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.09 0.98 8.03 -2.39 -0.02 0.96 16 39 H 0.10 2.32 3.42 -2.39 -0.01 2.31 16 40 H 0.05 1.40 6.82 -2.39 -0.02 1.38 16 Total: -1.00 -88.47 293.84 1.83 -86.63 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: 1.04 Total: 4.20 kcal Atomic # 6 Polarization: -53.75 SS G_CDS: 2.99 Total: -50.76 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -1.47 Total: -85.25 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -1.99 Total: -41.08 kcal Atomic # 14 Polarization: 52.21 SS G_CDS: 2.03 Total: 54.24 kcal Atomic # 16 Polarization: 32.79 SS G_CDS: -0.76 Total: 32.02 kcal Total: -88.47 1.83 -86.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528785091.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.487 kcal (2) G-P(sol) polarization free energy of solvation -88.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds