Wall clock time and date at job start Mon Mar 30 2020 05:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47412 * 2 1 4 4 C 1.53005 * 109.46988 * 239.99991 * 2 1 3 5 5 C 1.50697 * 109.47040 * 173.87929 * 4 2 1 6 6 H 1.07997 * 120.00040 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99846 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00018 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00011 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47312 * 90.00202 * 9 7 5 11 11 H 1.48504 * 109.47261 * 210.00180 * 9 7 5 12 12 H 1.48501 * 109.47248 * 329.99741 * 9 7 5 13 13 N 1.46903 * 109.47122 * 120.00237 * 2 1 3 14 14 C 1.45394 * 110.99577 * 205.92994 * 13 2 1 15 15 C 1.50739 * 102.31922 * 132.29208 * 14 13 2 16 16 C 1.56610 * 109.03595 * 104.30231 * 15 14 13 17 17 H 1.09009 * 117.97919 * 108.13727 * 16 15 14 18 18 C 1.58943 * 95.20319 * 234.79810 * 16 15 14 19 19 C 1.54642 * 105.01142 * 56.30402 * 18 16 15 20 20 C 1.52669 * 111.35822 * 44.75446 * 19 18 16 21 21 H 1.09005 * 111.77778 * 106.94579 * 20 19 18 22 22 C 1.43061 * 111.00032 * 71.90046 * 13 2 1 23 23 S 1.83109 * 103.51452 * 346.98801 * 20 19 18 24 24 O 1.42097 * 109.47236 * 96.01077 * 23 20 19 25 25 H 1.09006 * 109.46850 * 299.99938 * 1 2 3 26 26 H 1.09003 * 109.47274 * 59.99391 * 1 2 3 27 27 H 1.08998 * 109.47652 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46983 * 293.88416 * 4 2 1 29 29 H 1.09001 * 109.46757 * 53.88375 * 4 2 1 30 30 H 0.97004 * 119.99700 * 179.97438 * 8 7 5 31 31 H 1.09004 * 110.86702 * 250.54214 * 14 13 2 32 32 H 1.09001 * 110.86677 * 14.03503 * 14 13 2 33 33 H 1.09001 * 109.54200 * 344.44066 * 15 14 13 34 34 H 1.08995 * 109.54536 * 224.17504 * 15 14 13 35 35 H 1.09005 * 110.32910 * 175.18770 * 18 16 15 36 36 H 1.08995 * 110.33763 * 297.41346 * 18 16 15 37 37 H 1.08995 * 109.11491 * 284.25710 * 19 18 16 38 38 H 1.09005 * 109.11273 * 165.25369 * 19 18 16 39 39 H 1.09003 * 109.99129 * 311.81906 * 22 13 2 40 40 H 1.09002 * 109.99833 * 73.10905 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5393 -0.5914 -1.3274 6 1 4.0749 -0.0491 -0.5623 7 6 4.2273 -1.1659 -2.3750 8 7 3.5750 -1.8267 -3.3065 9 14 6.0859 -1.0056 -2.4715 10 1 6.7186 -2.1437 -1.7577 11 1 6.5105 -1.0162 -3.8945 12 1 6.5062 0.2706 -1.8391 13 7 2.0196 -0.6926 1.1994 14 6 3.3442 -0.2207 1.5692 15 6 3.1954 0.0289 3.0483 16 6 3.8998 -1.1278 3.8349 17 1 4.8338 -0.9016 4.3493 18 6 2.6224 -1.5135 4.6984 19 6 1.5170 -1.8231 3.6623 20 6 2.0474 -2.6956 2.5273 21 1 1.6780 -3.7187 2.5971 22 6 1.7993 -2.1028 1.1030 23 16 3.8639 -2.6259 2.7471 24 8 4.2953 -3.7594 3.4876 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.7687 -1.7757 -1.1962 29 1 1.5899 -0.2745 -2.1359 30 1 4.0591 -2.2306 -4.0437 31 1 4.0964 -0.9862 1.3784 32 1 3.5888 0.7018 1.0425 33 1 2.1374 0.0555 3.3090 34 1 3.6598 0.9807 3.3060 35 1 2.8285 -2.3941 5.3070 36 1 2.3255 -0.6766 5.3304 37 1 1.1438 -0.8866 3.2479 38 1 0.6977 -2.3429 4.1590 39 1 0.7736 -2.2993 0.7909 40 1 2.4964 -2.5410 0.3887 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528785092.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:52 Heat of formation + Delta-G solvation = 8.412229 kcal Electronic energy + Delta-G solvation = -20806.100152 eV Core-core repulsion = 17942.058074 eV Total energy + Delta-G solvation = -2864.042079 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.64239 -36.17321 -35.30769 -32.74469 -32.21901 -31.10081 -27.46579 -26.44689 -26.08255 -23.08833 -22.38318 -21.45824 -20.05355 -18.74198 -16.92089 -16.41041 -16.31054 -15.51855 -15.12421 -14.63438 -14.47969 -14.04159 -13.61617 -13.04037 -12.90978 -12.70298 -12.49536 -12.07018 -11.99988 -11.67241 -11.42611 -11.31557 -11.26831 -11.02052 -10.97860 -10.74041 -10.57357 -10.38305 -10.08465 -9.92445 -9.70969 -9.56190 -9.25702 -8.95979 -8.41440 -7.75834 -7.27045 -6.05612 -4.08728 1.94834 2.73200 3.28224 3.36550 3.37373 4.04949 4.40636 4.45890 4.64293 4.90768 5.09698 5.17404 5.31205 5.33959 5.46422 5.62049 5.66239 5.87170 5.90525 5.97651 6.00668 6.09536 6.15276 6.16221 6.17932 6.29048 6.39994 6.49617 6.57381 6.66883 6.74383 6.81980 6.98111 7.45201 7.59066 7.90721 8.00712 8.11288 8.33768 8.98629 9.56625 11.05253 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.019293 B = 0.008378 C = 0.006908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.972063 B = 3341.344188 C = 4052.587417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.085 3.915 3 H 0.070 0.930 4 C -0.008 4.008 5 C -0.527 4.527 6 H 0.065 0.935 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.559 5.559 14 C 0.064 3.936 15 C -0.113 4.113 16 C -0.395 4.395 17 H 0.129 0.871 18 C -0.137 4.137 19 C -0.118 4.118 20 C -0.381 4.381 21 H 0.103 0.897 22 C 0.106 3.894 23 S 1.206 4.794 24 O -0.876 6.876 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.024 0.976 29 H 0.018 0.982 30 H 0.260 0.740 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.319 3.986 9.983 11.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 H 0.088 0.912 4 C -0.046 4.046 5 C -0.565 4.565 6 H 0.083 0.917 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.196 1.196 13 N -0.283 5.283 14 C -0.065 4.065 15 C -0.152 4.152 16 C -0.512 4.512 17 H 0.147 0.853 18 C -0.175 4.175 19 C -0.156 4.156 20 C -0.501 4.501 21 H 0.122 0.878 22 C -0.024 4.024 23 S 1.408 4.592 24 O -0.871 6.871 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.126 0.874 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.135 0.865 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.748 3.309 9.809 10.711 hybrid contribution 0.433 -0.596 1.135 1.353 sum -2.315 2.712 10.945 11.511 Atomic orbital electron populations 1.21869 0.96760 1.00962 1.00228 1.21871 0.93013 0.97676 0.89702 0.91209 1.19779 0.96143 0.96252 0.92401 1.21407 0.92217 1.34087 1.08771 0.91674 1.24994 0.97925 0.95349 0.95776 1.69959 1.35486 1.35328 1.12291 0.86802 0.86378 0.78756 0.77460 1.20372 1.21367 1.19627 1.59040 1.23492 1.08005 1.37767 1.21848 0.89371 1.01245 0.94039 1.22856 1.02118 0.95315 0.94897 1.29832 1.00420 1.11982 1.09003 0.85280 1.23781 0.93928 1.01300 0.98496 1.22097 0.97711 1.02235 0.93550 1.27870 1.17820 1.03430 1.00932 0.87835 1.21555 1.02533 0.87758 0.90570 1.72496 0.91203 0.86243 1.09272 1.92960 1.74800 1.44856 1.74481 0.93579 0.93121 0.93355 0.95808 0.96388 0.93024 0.92291 0.88952 0.87367 0.92489 0.92738 0.90379 0.86550 0.92596 0.89823 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.24 37.16 0.34 -1.75 16 2 C 0.08 1.44 2.45 -67.71 -0.17 1.28 16 3 H 0.07 1.20 7.37 -51.93 -0.38 0.82 16 4 C -0.01 -0.17 3.97 -27.88 -0.11 -0.28 16 5 C -0.53 -12.56 8.15 -34.44 -0.28 -12.84 16 6 H 0.07 1.44 4.88 -52.49 -0.26 1.19 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.89 -24.70 13.29 55.43 0.74 -23.97 16 9 Si 0.88 19.76 29.54 -169.99 -5.02 14.73 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 N -0.56 -8.50 2.06 -230.22 -0.47 -8.98 16 14 C 0.06 0.94 3.68 -5.77 -0.02 0.91 16 15 C -0.11 -1.42 5.13 -25.92 -0.13 -1.55 16 16 C -0.39 -5.32 5.89 -21.48 -0.13 -5.44 16 17 H 0.13 1.61 8.14 -51.92 -0.42 1.19 16 18 C -0.14 -1.83 5.55 -22.56 -0.13 -1.95 16 19 C -0.12 -1.58 5.29 -26.04 -0.14 -1.72 16 20 C -0.38 -5.66 4.04 -25.16 -0.10 -5.76 16 21 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 22 C 0.11 1.67 4.02 -4.11 -0.02 1.65 16 23 S 1.21 19.46 10.43 -107.50 -1.12 18.34 16 24 O -0.88 -18.71 18.11 -35.23 -0.64 -19.35 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.72 6.57 -51.93 -0.34 0.38 16 28 H 0.02 0.55 6.24 -51.93 -0.32 0.23 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.06 0.90 5.19 -32.62 -0.17 0.73 16 32 H 0.09 1.39 6.12 -51.93 -0.32 1.07 16 33 H 0.11 1.34 3.91 -51.93 -0.20 1.14 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.82 8.10 -51.93 -0.42 0.40 16 36 H 0.08 0.90 8.04 -51.93 -0.42 0.49 16 37 H 0.12 1.50 4.60 -51.93 -0.24 1.26 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 1.29 6.31 -51.93 -0.33 0.96 16 40 H 0.07 1.22 6.58 -51.93 -0.34 0.88 16 LS Contribution 296.82 15.07 4.47 4.47 Total: -1.00 -29.88 296.82 -8.85 -38.74 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.83 Total: 1.99 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: -0.97 Total: -25.98 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.26 Total: -32.94 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.64 Total: -19.35 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: 19.46 SS G_CDS: -1.12 Total: 18.34 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.88 -8.85 -38.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528785092.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.148 kcal (2) G-P(sol) polarization free energy of solvation -29.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds