Wall clock time and date at job start Mon Mar 30 2020 05:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47412 * 2 1 4 4 C 1.53005 * 109.46988 * 239.99991 * 2 1 3 5 5 C 1.50697 * 109.47040 * 173.87929 * 4 2 1 6 6 H 1.07997 * 120.00040 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99846 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00018 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00011 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47312 * 90.00202 * 9 7 5 11 11 H 1.48504 * 109.47261 * 210.00180 * 9 7 5 12 12 H 1.48501 * 109.47248 * 329.99741 * 9 7 5 13 13 N 1.46903 * 109.47122 * 120.00237 * 2 1 3 14 14 C 1.45394 * 110.99577 * 205.92994 * 13 2 1 15 15 C 1.50739 * 102.31922 * 132.29208 * 14 13 2 16 16 C 1.56610 * 109.03595 * 104.30231 * 15 14 13 17 17 H 1.09009 * 117.97919 * 108.13727 * 16 15 14 18 18 C 1.58943 * 95.20319 * 234.79810 * 16 15 14 19 19 C 1.54642 * 105.01142 * 56.30402 * 18 16 15 20 20 C 1.52669 * 111.35822 * 44.75446 * 19 18 16 21 21 H 1.09005 * 111.77778 * 106.94579 * 20 19 18 22 22 C 1.43061 * 111.00032 * 71.90046 * 13 2 1 23 23 S 1.83109 * 103.51452 * 346.98801 * 20 19 18 24 24 O 1.42097 * 109.47236 * 96.01077 * 23 20 19 25 25 H 1.09006 * 109.46850 * 299.99938 * 1 2 3 26 26 H 1.09003 * 109.47274 * 59.99391 * 1 2 3 27 27 H 1.08998 * 109.47652 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46983 * 293.88416 * 4 2 1 29 29 H 1.09001 * 109.46757 * 53.88375 * 4 2 1 30 30 H 0.97004 * 119.99700 * 179.97438 * 8 7 5 31 31 H 1.09004 * 110.86702 * 250.54214 * 14 13 2 32 32 H 1.09001 * 110.86677 * 14.03503 * 14 13 2 33 33 H 1.09001 * 109.54200 * 344.44066 * 15 14 13 34 34 H 1.08995 * 109.54536 * 224.17504 * 15 14 13 35 35 H 1.09005 * 110.32910 * 175.18770 * 18 16 15 36 36 H 1.08995 * 110.33763 * 297.41346 * 18 16 15 37 37 H 1.08995 * 109.11491 * 284.25710 * 19 18 16 38 38 H 1.09005 * 109.11273 * 165.25369 * 19 18 16 39 39 H 1.09003 * 109.99129 * 311.81906 * 22 13 2 40 40 H 1.09002 * 109.99833 * 73.10905 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5393 -0.5914 -1.3274 6 1 4.0749 -0.0491 -0.5623 7 6 4.2273 -1.1659 -2.3750 8 7 3.5750 -1.8267 -3.3065 9 14 6.0859 -1.0056 -2.4715 10 1 6.7186 -2.1437 -1.7577 11 1 6.5105 -1.0162 -3.8945 12 1 6.5062 0.2706 -1.8391 13 7 2.0196 -0.6926 1.1994 14 6 3.3442 -0.2207 1.5692 15 6 3.1954 0.0289 3.0483 16 6 3.8998 -1.1278 3.8349 17 1 4.8338 -0.9016 4.3493 18 6 2.6224 -1.5135 4.6984 19 6 1.5170 -1.8231 3.6623 20 6 2.0474 -2.6956 2.5273 21 1 1.6780 -3.7187 2.5971 22 6 1.7993 -2.1028 1.1030 23 16 3.8639 -2.6259 2.7471 24 8 4.2953 -3.7594 3.4876 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.7687 -1.7757 -1.1962 29 1 1.5899 -0.2745 -2.1359 30 1 4.0591 -2.2306 -4.0437 31 1 4.0964 -0.9862 1.3784 32 1 3.5888 0.7018 1.0425 33 1 2.1374 0.0555 3.3090 34 1 3.6598 0.9807 3.3060 35 1 2.8285 -2.3941 5.3070 36 1 2.3255 -0.6766 5.3304 37 1 1.1438 -0.8866 3.2479 38 1 0.6977 -2.3429 4.1590 39 1 0.7736 -2.2993 0.7909 40 1 2.4964 -2.5410 0.3887 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528785092.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:51 Heat of formation + Delta-G solvation = -10.691885 kcal Electronic energy + Delta-G solvation = -20806.928569 eV Core-core repulsion = 17942.058074 eV Total energy + Delta-G solvation = -2864.870495 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.89699 -37.46004 -36.75365 -34.58745 -33.41097 -32.48366 -29.20394 -27.62579 -27.27256 -24.83558 -23.57900 -22.69255 -21.28063 -20.06261 -18.35767 -18.10904 -17.62269 -16.80128 -16.46388 -16.26430 -15.87625 -15.25907 -14.86596 -14.54047 -14.33701 -13.99232 -13.87434 -13.54737 -13.41190 -13.15219 -12.84013 -12.59800 -12.56189 -12.49636 -12.24508 -12.19886 -12.02706 -11.84204 -11.62375 -11.20790 -11.09282 -10.87007 -10.61734 -10.55058 -10.39701 -9.05070 -8.62810 -8.03574 -6.10179 0.69650 1.49092 1.52185 1.52344 1.58692 2.52593 2.77364 3.24790 3.34406 3.44260 3.73209 3.96356 4.07111 4.18439 4.33463 4.38881 4.54753 4.62324 4.76930 4.82425 4.86975 4.91683 4.95197 5.01552 5.04551 5.07389 5.17715 5.28401 5.35148 5.43282 5.47218 5.55624 5.68707 5.76080 5.82753 6.02323 6.42108 6.56032 6.79395 7.09029 7.58807 9.07884 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.019293 B = 0.008378 C = 0.006908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.972063 B = 3341.344188 C = 4052.587417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.094 3.906 3 H 0.077 0.923 4 C -0.005 4.005 5 C -0.519 4.519 6 H 0.085 0.915 7 C 0.004 3.996 8 N -0.936 5.936 9 Si 0.932 3.068 10 H -0.275 1.275 11 H -0.298 1.298 12 H -0.252 1.252 13 N -0.542 5.542 14 C 0.051 3.949 15 C -0.101 4.101 16 C -0.376 4.376 17 H 0.145 0.855 18 C -0.136 4.136 19 C -0.117 4.117 20 C -0.365 4.365 21 H 0.098 0.902 22 C 0.110 3.890 23 S 1.179 4.821 24 O -0.937 6.937 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.003 0.997 29 H -0.015 1.015 30 H 0.255 0.745 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.084 0.916 35 H 0.033 0.967 36 H 0.107 0.893 37 H 0.130 0.870 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 6.349 12.081 14.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.014 4.014 3 H 0.095 0.905 4 C -0.043 4.043 5 C -0.557 4.557 6 H 0.103 0.897 7 C -0.193 4.193 8 N -0.578 5.578 9 Si 0.758 3.242 10 H -0.201 1.201 11 H -0.225 1.225 12 H -0.176 1.176 13 N -0.266 5.266 14 C -0.078 4.078 15 C -0.139 4.139 16 C -0.496 4.496 17 H 0.163 0.837 18 C -0.174 4.174 19 C -0.154 4.154 20 C -0.486 4.486 21 H 0.116 0.884 22 C -0.021 4.021 23 S 1.385 4.615 24 O -0.933 6.933 25 H 0.090 0.910 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.022 0.978 29 H 0.003 0.997 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.136 0.864 34 H 0.102 0.898 35 H 0.052 0.948 36 H 0.126 0.874 37 H 0.148 0.852 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.018 5.664 11.926 13.543 hybrid contribution 0.466 -1.270 0.477 1.435 sum -2.552 4.393 12.403 13.403 Atomic orbital electron populations 1.21798 0.94803 1.01208 1.01405 1.21729 0.94620 0.97236 0.87818 0.90491 1.19746 0.95321 0.95455 0.93760 1.21926 0.93387 1.32230 1.08145 0.89704 1.25775 1.01877 0.95675 0.95984 1.70104 1.36977 1.37390 1.13293 0.85933 0.81893 0.79524 0.76842 1.20104 1.22469 1.17566 1.59201 1.23966 1.07302 1.36125 1.22015 0.88760 1.01051 0.95950 1.22766 1.02811 0.95816 0.92555 1.29726 1.01578 1.09916 1.08369 0.83667 1.23829 0.93510 1.01564 0.98493 1.22155 0.98002 1.02431 0.92849 1.27720 1.16108 1.03717 1.01072 0.88356 1.21448 1.02083 0.88008 0.90524 1.71926 0.92315 0.86794 1.10452 1.92891 1.76630 1.47628 1.76106 0.90966 0.93355 0.93627 0.97837 0.99657 0.93589 0.93146 0.88641 0.86393 0.89756 0.94808 0.87412 0.85208 0.91616 0.89277 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 9.24 71.98 0.66 -3.02 16 2 C 0.09 3.02 2.45 44.91 0.11 3.13 16 3 H 0.08 2.42 7.37 -2.38 -0.02 2.40 16 4 C 0.00 -0.20 3.97 29.85 0.12 -0.08 16 5 C -0.52 -24.60 8.15 25.60 0.21 -24.39 16 6 H 0.09 3.60 4.88 -2.91 -0.01 3.59 16 7 C 0.00 0.21 5.46 84.65 0.46 0.67 16 8 N -0.94 -53.49 13.29 21.45 0.28 -53.20 16 9 Si 0.93 40.53 29.54 68.60 2.03 42.56 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.30 -13.40 7.11 99.48 0.71 -12.70 16 12 H -0.25 -10.07 7.11 99.48 0.71 -9.37 16 13 N -0.54 -15.21 2.06 -882.30 -1.81 -17.02 16 14 C 0.05 1.34 3.68 85.85 0.32 1.66 16 15 C -0.10 -2.07 5.13 31.12 0.16 -1.92 16 16 C -0.38 -8.95 5.89 33.99 0.20 -8.75 16 17 H 0.15 3.10 8.14 -2.38 -0.02 3.08 16 18 C -0.14 -3.17 5.55 33.29 0.18 -2.98 16 19 C -0.12 -2.75 5.29 31.04 0.16 -2.59 16 20 C -0.37 -10.47 4.04 31.61 0.13 -10.34 16 21 H 0.10 2.95 8.14 -2.38 -0.02 2.93 16 22 C 0.11 3.37 4.02 88.14 0.35 3.72 16 23 S 1.18 37.64 10.43 -56.49 -0.59 37.06 16 24 O -0.94 -41.01 18.11 -148.98 -2.70 -43.70 16 25 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.04 1.27 6.57 -2.39 -0.02 1.25 16 28 H 0.00 0.16 6.24 -2.39 -0.01 0.15 16 29 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 30 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 31 H 0.05 1.46 5.19 -14.66 -0.08 1.38 16 32 H 0.10 2.52 6.12 -2.39 -0.01 2.51 16 33 H 0.12 2.28 3.91 -2.39 -0.01 2.27 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 35 H 0.03 0.94 8.10 -2.38 -0.02 0.92 16 36 H 0.11 1.94 8.04 -2.39 -0.02 1.92 16 37 H 0.13 2.75 4.60 -2.39 -0.01 2.74 16 38 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.09 2.66 6.31 -2.39 -0.02 2.64 16 40 H 0.04 1.43 6.58 -2.39 -0.02 1.41 16 Total: -1.00 -66.07 296.82 1.25 -64.82 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.97 Total: 14.39 kcal Atomic # 6 Polarization: -47.96 SS G_CDS: 3.07 Total: -44.89 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: -1.53 Total: -70.23 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -2.70 Total: -43.70 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Atomic # 16 Polarization: 37.64 SS G_CDS: -0.59 Total: 37.06 kcal Total: -66.07 1.25 -64.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528785092.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.124 kcal (2) G-P(sol) polarization free energy of solvation -66.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds