Wall clock time and date at job start Mon Mar 30 2020 05:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48495 * 109.46891 * 29.99921 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.53465 * 35.00542 * 11 10 9 13 13 C 1.53168 * 109.53885 * 274.83581 * 11 10 9 14 14 C 1.53110 * 109.15137 * 183.35490 * 13 11 10 15 15 O 1.42876 * 109.50062 * 57.35765 * 14 13 11 16 16 C 1.43067 * 114.06598 * 298.67368 * 15 14 13 17 17 C 1.52748 * 109.33163 * 181.00488 * 16 15 14 18 18 C 1.53079 * 109.90475 * 49.32922 * 17 16 15 19 19 S 1.81740 * 108.84519 * 63.21443 * 18 17 16 20 20 C 1.81750 * 102.22004 * 306.83435 * 19 18 17 21 21 C 1.52731 * 109.34064 * 301.97682 * 16 15 14 22 22 C 1.53148 * 109.53635 * 155.16629 * 11 10 9 23 23 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 25 25 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 26 26 H 1.00902 * 111.00582 * 303.95889 * 10 9 7 27 27 H 1.08998 * 109.52595 * 303.17223 * 13 11 10 28 28 H 1.09002 * 109.52585 * 63.37001 * 13 11 10 29 29 H 1.08995 * 109.40282 * 297.36899 * 14 13 11 30 30 H 1.08996 * 109.47994 * 177.39228 * 14 13 11 31 31 H 1.09001 * 109.39810 * 169.46463 * 17 16 15 32 32 H 1.09005 * 109.39938 * 289.19385 * 17 16 15 33 33 H 1.09004 * 109.57452 * 303.40988 * 18 17 16 34 34 H 1.08993 * 109.68241 * 183.09097 * 18 17 16 35 35 H 1.09002 * 109.57311 * 293.34972 * 20 19 18 36 36 H 1.08993 * 109.67700 * 173.03061 * 20 19 18 37 37 H 1.08999 * 109.40199 * 70.79321 * 21 16 15 38 38 H 1.09005 * 109.40172 * 190.53175 * 21 16 15 39 39 H 1.08993 * 109.53111 * 296.93861 * 22 11 10 40 40 H 1.09005 * 109.53046 * 57.13753 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 5.4697 -2.6183 0.0009 12 1 5.8565 -1.7870 0.5902 13 6 5.9850 -2.5102 -1.4374 14 6 7.5109 -2.6361 -1.4351 15 8 7.8863 -3.8745 -0.8295 16 6 7.4761 -4.0048 0.5349 17 6 7.9522 -5.3500 1.0799 18 6 9.4364 -5.5460 0.7602 19 16 10.3956 -4.2599 1.6139 20 6 9.5679 -2.7366 1.0682 21 6 8.0687 -2.8591 1.3528 22 6 5.9467 -3.9414 0.6070 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6801 0.8912 25 1 3.8752 -0.6804 -0.8888 26 1 3.6253 -3.0956 0.7820 27 1 5.5555 -3.3110 -2.0394 28 1 5.6985 -1.5452 -1.8555 29 1 7.9415 -1.8097 -0.8698 30 1 7.8796 -2.6064 -2.4604 31 1 7.8082 -5.3744 2.1600 32 1 7.3740 -6.1518 0.6207 33 1 9.5921 -5.4640 -0.3156 34 1 9.7587 -6.5294 1.1019 35 1 9.7265 -2.5979 -0.0012 36 1 9.9741 -1.8834 1.6114 37 1 7.5718 -1.9271 1.0835 38 1 7.9165 -3.0554 2.4142 39 1 5.6283 -4.0013 1.6477 40 1 5.5208 -4.7736 0.0463 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567688392.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:34 Heat of formation + Delta-G solvation = -55.447659 kcal Electronic energy + Delta-G solvation = -19827.840925 eV Core-core repulsion = 16961.029674 eV Total energy + Delta-G solvation = -2866.811251 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.49529 -36.11256 -34.81742 -32.86865 -31.88220 -30.98112 -29.99557 -27.12140 -24.59601 -23.59960 -23.48661 -21.45471 -20.55846 -19.27521 -17.34597 -16.85024 -16.10533 -15.51481 -15.43372 -14.96490 -14.85840 -14.13960 -14.05959 -13.78603 -13.53665 -13.15786 -12.97360 -12.85784 -12.60607 -12.33174 -12.11126 -11.93473 -11.64822 -11.37430 -11.24716 -10.96280 -10.78042 -10.63163 -10.45962 -10.07825 -9.89470 -9.74581 -9.45081 -9.30920 -8.64312 -7.83322 -7.56658 -6.11076 -4.09394 1.65061 2.37734 3.23521 3.31085 3.32070 3.61641 4.35683 4.36985 4.46386 4.53794 4.74879 4.81783 4.98406 5.04304 5.07699 5.17329 5.21714 5.29019 5.33328 5.36774 5.43309 5.52282 5.62941 5.71753 5.76976 5.80055 5.86155 5.90908 6.01952 6.17104 6.30455 6.51796 6.71817 6.94132 7.16642 7.54672 7.82966 8.25120 8.58913 8.96918 9.50604 11.02240 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.035553 B = 0.004277 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.367993 B = 6545.003361 C = 6728.833023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.517 4.517 8 H 0.079 0.921 9 C 0.165 3.835 10 N -0.675 5.675 11 C 0.083 3.917 12 H 0.037 0.963 13 C -0.142 4.142 14 C 0.058 3.942 15 O -0.371 6.371 16 C 0.117 3.883 17 C -0.105 4.105 18 C -0.072 4.072 19 S -0.278 6.278 20 C -0.073 4.073 21 C -0.152 4.152 22 C -0.140 4.140 23 H 0.264 0.736 24 H -0.017 1.017 25 H 0.021 0.979 26 H 0.337 0.663 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.014 -8.033 1.715 21.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.556 4.556 8 H 0.097 0.903 9 C 0.038 3.962 10 N -0.305 5.305 11 C -0.027 4.027 12 H 0.055 0.945 13 C -0.180 4.180 14 C -0.019 4.019 15 O -0.291 6.291 16 C 0.077 3.923 17 C -0.144 4.144 18 C -0.220 4.220 19 S -0.052 6.052 20 C -0.221 4.221 21 C -0.191 4.191 22 C -0.178 4.178 23 H 0.074 0.926 24 H 0.000 1.000 25 H 0.039 0.961 26 H 0.155 0.845 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 20.779 -8.230 1.620 22.408 hybrid contribution -0.718 1.716 0.163 1.867 sum 20.060 -6.515 1.783 21.167 Atomic orbital electron populations 1.69897 1.06157 1.26920 1.50818 1.24904 0.94742 0.98919 0.94694 0.86836 0.80216 0.83924 0.78605 1.20107 1.21125 1.19371 1.21054 0.88919 0.94828 1.50767 0.90285 1.20029 0.96661 0.84959 0.94581 1.60490 1.03681 1.16837 1.49528 1.21540 0.90817 0.95214 0.95148 0.94546 1.22195 0.94395 1.03515 0.97940 1.22642 0.95101 0.86230 0.97909 1.87929 1.78504 1.38022 1.24626 1.21453 0.93708 0.94579 0.82574 1.21756 0.94758 0.96145 1.01751 1.23310 0.96347 0.98760 1.03591 1.86728 1.48252 1.03728 1.66504 1.23347 0.97133 0.96785 1.04855 1.22444 0.94338 1.00489 1.01846 1.22355 0.94171 0.99523 1.01720 0.92595 0.99961 0.96082 0.84529 0.90370 0.90945 0.93361 0.88941 0.89527 0.89891 0.88734 0.88115 0.89212 0.88134 0.89804 0.89700 0.91080 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.96 55.43 0.77 -26.70 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -14.67 9.87 -34.44 -0.34 -15.01 16 8 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 9 C 0.17 3.94 4.31 -4.98 -0.02 3.92 16 10 N -0.67 -13.44 6.30 -107.82 -0.68 -14.12 16 11 C 0.08 1.31 2.26 -67.55 -0.15 1.16 16 12 H 0.04 0.59 6.01 -51.93 -0.31 0.28 16 13 C -0.14 -2.09 5.63 -26.59 -0.15 -2.24 16 14 C 0.06 0.69 6.04 37.21 0.22 0.92 16 15 O -0.37 -4.52 8.18 -35.23 -0.29 -4.81 16 16 C 0.12 1.31 0.68 -90.76 -0.06 1.25 16 17 C -0.11 -1.01 4.87 -26.82 -0.13 -1.14 16 18 C -0.07 -0.68 6.26 37.20 0.23 -0.45 16 19 S -0.28 -2.99 22.33 -107.50 -2.40 -5.39 16 20 C -0.07 -0.74 6.06 37.20 0.23 -0.52 16 21 C -0.15 -1.63 3.99 -26.82 -0.11 -1.74 16 22 C -0.14 -1.80 4.15 -26.53 -0.11 -1.91 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H -0.02 -0.41 7.12 -51.93 -0.37 -0.78 16 25 H 0.02 0.51 6.95 -51.93 -0.36 0.15 16 26 H 0.34 6.52 8.36 -39.29 -0.33 6.19 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.07 1.14 7.56 -51.93 -0.39 0.75 16 29 H 0.05 0.54 5.88 -51.93 -0.31 0.23 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.09 0.78 8.03 -51.93 -0.42 0.36 16 32 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 33 H 0.09 0.97 7.35 -51.93 -0.38 0.58 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.93 6.43 -51.93 -0.33 0.60 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.96 5.00 -51.93 -0.26 0.70 16 38 H 0.08 0.88 8.03 -51.93 -0.42 0.47 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 1.11 8.13 -51.93 -0.42 0.69 16 LS Contribution 308.60 15.07 4.65 4.65 Total: -1.00 -30.19 308.60 -9.52 -39.72 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -6.42 Total: 3.83 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -0.49 Total: -13.86 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.09 Total: -40.83 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.29 Total: -4.81 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Atomic # 16 Polarization: -2.99 SS G_CDS: -2.40 Total: -5.39 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.19 -9.52 -39.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567688392.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.731 kcal (2) G-P(sol) polarization free energy of solvation -30.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds