Wall clock time and date at job start Mon Mar 30 2020 05:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47371 * 2 1 4 4 C 1.52995 * 109.47012 * 239.99811 * 2 1 3 5 5 C 1.50707 * 109.47059 * 175.37755 * 4 2 1 6 6 H 1.08001 * 119.99981 * 4.87476 * 5 4 2 7 7 C 1.37877 * 119.99941 * 184.87569 * 5 4 2 8 8 N 1.31508 * 120.00386 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99796 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46998 * 59.99778 * 9 7 5 11 11 H 1.48495 * 109.46944 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47138 * 299.99935 * 9 7 5 13 13 N 1.46907 * 109.46808 * 120.00201 * 2 1 3 14 14 C 1.46999 * 111.00222 * 59.05865 * 13 2 1 15 15 C 1.53087 * 109.25903 * 177.64045 * 14 13 2 16 16 O 1.42968 * 109.28357 * 56.80723 * 15 14 13 17 17 C 1.43378 * 113.61450 * 301.02738 * 16 15 14 18 18 C 1.52572 * 109.33229 * 299.58579 * 17 16 15 19 19 C 1.54181 * 112.69761 * 239.88320 * 18 17 16 20 20 S 1.83937 * 102.58685 * 24.49162 * 19 18 17 21 21 C 1.54487 * 108.31230 * 176.89396 * 17 16 15 22 22 C 1.46975 * 110.99751 * 295.36443 * 13 2 1 23 23 H 1.09005 * 109.47420 * 300.00328 * 1 2 3 24 24 H 1.09004 * 109.47056 * 59.99825 * 1 2 3 25 25 H 1.09000 * 109.47371 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47417 * 295.37408 * 4 2 1 27 27 H 1.08999 * 109.47052 * 55.38245 * 4 2 1 28 28 H 0.96997 * 120.00490 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.50737 * 297.57243 * 14 13 2 30 30 H 1.09006 * 109.50841 * 57.65941 * 14 13 2 31 31 H 1.09003 * 109.50273 * 176.75068 * 15 14 13 32 32 H 1.09008 * 109.49859 * 296.82559 * 15 14 13 33 33 H 1.09000 * 108.84924 * 0.73708 * 18 17 16 34 34 H 1.09004 * 108.84743 * 119.03571 * 18 17 16 35 35 H 1.09001 * 110.78603 * 142.76225 * 19 18 17 36 36 H 1.08993 * 110.78840 * 266.21642 * 19 18 17 37 37 H 1.08995 * 110.77528 * 214.42672 * 21 17 16 38 38 H 1.09005 * 110.77346 * 337.84770 * 21 17 16 39 39 H 1.08992 * 109.52957 * 302.57465 * 22 13 2 40 40 H 1.09001 * 109.52070 * 62.76625 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5426 -0.6229 -1.3078 6 1 4.0861 -0.1677 -0.4931 7 6 4.2235 -1.1140 -2.4015 8 7 3.5617 -1.6678 -3.3938 9 14 6.0862 -0.9927 -2.4738 10 1 6.6750 -1.7270 -1.3252 11 1 6.5721 -1.5894 -3.7437 12 1 6.4921 0.4343 -2.4096 13 7 2.0196 -0.6926 1.1995 14 6 1.5299 -2.0779 1.2448 15 6 2.1100 -2.7785 2.4761 16 8 1.7575 -2.0408 3.6489 17 6 2.2284 -0.6866 3.6388 18 6 3.7513 -0.6821 3.5464 19 6 4.4182 0.0166 4.7481 20 16 3.1436 -0.1461 6.0643 21 6 1.7159 0.0151 4.9161 22 6 1.6409 0.0349 2.4191 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.7458 -1.7701 -1.2087 27 1 1.6106 -0.2574 -2.1372 28 1 4.0407 -2.0137 -4.1631 29 1 0.4415 -2.0774 1.3053 30 1 1.8441 -2.6047 0.3437 31 1 1.7042 -3.7878 2.5454 32 1 3.1954 -2.8279 2.3890 33 1 4.1042 -1.7122 3.4976 34 1 4.0471 -0.1682 2.6317 35 1 5.3364 -0.4969 5.0334 36 1 4.6133 1.0657 4.5262 37 1 1.4949 1.0641 4.7188 38 1 0.8401 -0.4975 5.3139 39 1 2.0324 1.0511 2.3736 40 1 0.5545 0.0655 2.5025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568261626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:55 Heat of formation + Delta-G solvation = -55.934234 kcal Electronic energy + Delta-G solvation = -20276.031445 eV Core-core repulsion = 17409.199094 eV Total energy + Delta-G solvation = -2866.832351 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.32977 -38.15020 -35.43553 -34.85487 -32.37605 -31.71603 -29.46590 -28.85072 -26.71400 -25.23720 -24.64618 -23.80364 -20.75370 -19.80068 -18.34278 -17.86337 -17.46335 -17.26124 -16.53855 -16.27029 -15.96225 -15.31701 -15.07510 -14.95848 -14.75210 -14.10853 -14.05808 -13.89114 -13.57937 -13.23071 -12.97127 -12.89150 -12.77138 -12.64546 -12.48432 -12.40544 -12.19280 -11.96903 -11.85433 -11.37957 -11.11484 -11.08351 -11.06071 -10.46526 -10.40013 -9.00851 -8.71564 -8.09271 -6.14019 0.88773 1.29130 1.43248 1.44486 1.51839 2.47461 2.66917 2.95619 3.26429 3.56066 3.65379 3.80244 4.06197 4.10491 4.17381 4.21817 4.27878 4.36129 4.41983 4.49414 4.55918 4.58779 4.63461 4.68461 4.82084 4.89554 4.93807 4.98161 5.08680 5.18088 5.21720 5.26822 5.50599 5.70252 5.90210 6.15062 6.25359 6.32269 6.47021 7.00499 7.52331 9.02439 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.021019 B = 0.006023 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.839463 B = 4648.007710 C = 5359.469281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.095 3.905 3 H 0.069 0.931 4 C 0.035 3.965 5 C -0.498 4.498 6 H 0.062 0.938 7 C -0.003 4.003 8 N -0.940 5.940 9 Si 0.952 3.048 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.270 1.270 13 N -0.520 5.520 14 C 0.023 3.977 15 C 0.066 3.934 16 O -0.380 6.380 17 C 0.123 3.877 18 C -0.143 4.143 19 C -0.050 4.050 20 S -0.329 6.329 21 C -0.042 4.042 22 C 0.033 3.967 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.048 0.952 26 H -0.003 1.003 27 H -0.007 1.007 28 H 0.258 0.742 29 H 0.040 0.960 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.122 0.878 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.267 3.271 15.521 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.013 4.013 3 H 0.088 0.912 4 C -0.002 4.002 5 C -0.536 4.536 6 H 0.080 0.920 7 C -0.199 4.199 8 N -0.582 5.582 9 Si 0.778 3.222 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.196 1.196 13 N -0.244 5.244 14 C -0.105 4.105 15 C -0.011 4.011 16 O -0.299 6.299 17 C 0.082 3.918 18 C -0.182 4.182 19 C -0.198 4.198 20 S -0.102 6.102 21 C -0.190 4.190 22 C -0.096 4.096 23 H 0.085 0.915 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.015 0.985 27 H 0.011 0.989 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.131 0.869 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.109 0.891 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.735 2.945 16.727 17.203 hybrid contribution 0.086 -0.021 -2.152 2.153 sum -2.650 2.924 14.575 15.100 Atomic orbital electron populations 1.22391 0.97413 1.01544 1.02047 1.21642 0.91907 0.97494 0.90228 0.91239 1.19073 0.95342 0.94318 0.91464 1.21457 0.93041 1.36447 1.02678 0.91996 1.25817 1.02522 0.95797 0.95758 1.70077 1.37071 1.42117 1.08935 0.85695 0.81001 0.78477 0.76985 1.19599 1.21717 1.19559 1.62233 1.59271 1.01594 1.01314 1.22691 0.97601 0.90862 0.99395 1.22700 0.99862 0.95325 0.83176 1.88100 1.77723 1.23410 1.40703 1.22296 0.92590 0.82982 0.93928 1.22505 0.93825 1.02712 0.99117 1.24155 0.98532 1.04808 0.92271 1.87987 1.06080 1.96937 1.19216 1.24207 0.98177 1.04255 0.92405 1.22941 0.98862 0.98387 0.89433 0.91472 0.92446 0.93258 0.98483 0.98884 0.93350 0.94154 0.91136 0.86929 0.92704 0.90793 0.89414 0.86912 0.87711 0.85982 0.86527 0.89090 0.93339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.52 8.49 71.98 0.61 -4.91 16 2 C 0.10 3.60 2.31 44.91 0.10 3.70 16 3 H 0.07 2.65 8.13 -2.39 -0.02 2.63 16 4 C 0.04 1.73 4.26 29.85 0.13 1.86 16 5 C -0.50 -26.80 8.83 25.60 0.23 -26.57 16 6 H 0.06 3.26 7.73 -2.91 -0.02 3.24 16 7 C 0.00 -0.16 5.46 84.66 0.46 0.31 16 8 N -0.94 -56.19 13.29 21.45 0.28 -55.90 16 9 Si 0.95 43.93 29.54 68.60 2.03 45.96 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 N -0.52 -17.60 3.80 -869.53 -3.30 -20.90 16 14 C 0.02 0.76 4.87 86.31 0.42 1.18 16 15 C 0.07 1.90 6.61 72.01 0.48 2.38 16 16 O -0.38 -10.78 10.13 -148.98 -1.51 -12.29 16 17 C 0.12 3.09 0.96 -10.30 -0.01 3.08 16 18 C -0.14 -3.62 5.02 30.85 0.15 -3.47 16 19 C -0.05 -1.05 7.46 72.38 0.54 -0.51 16 20 S -0.33 -7.75 23.26 -56.49 -1.31 -9.07 16 21 C -0.04 -0.89 6.60 72.49 0.48 -0.41 16 22 C 0.03 0.88 3.52 86.42 0.30 1.19 16 23 H 0.07 1.77 6.57 -2.38 -0.02 1.76 16 24 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.05 1.58 6.44 -2.39 -0.02 1.57 16 26 H 0.00 -0.16 6.14 -2.39 -0.01 -0.17 16 27 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 29 H 0.04 1.28 6.43 -2.39 -0.02 1.27 16 30 H 0.07 2.79 6.11 -2.38 -0.01 2.78 16 31 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.05 1.67 6.34 -2.38 -0.02 1.66 16 33 H 0.07 2.04 6.20 -2.39 -0.01 2.03 16 34 H 0.09 2.51 7.26 -2.38 -0.02 2.49 16 35 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.12 2.05 7.85 -2.39 -0.02 2.03 16 38 H 0.12 2.40 8.03 -2.38 -0.02 2.38 16 39 H 0.09 2.24 8.13 -2.39 -0.02 2.22 16 40 H 0.05 1.23 6.57 -2.39 -0.02 1.21 16 Total: -1.00 -61.70 312.67 1.09 -60.61 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 1.02 Total: 13.78 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: 3.89 Total: -22.18 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -3.02 Total: -76.81 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -1.51 Total: -12.29 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: -7.75 SS G_CDS: -1.31 Total: -9.07 kcal Total: -61.70 1.09 -60.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568261626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.673 kcal (2) G-P(sol) polarization free energy of solvation -61.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds