Wall clock time and date at job start Mon Mar 30 2020 05:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47306 * 2 1 4 4 C 1.52996 * 109.47399 * 119.99966 * 2 1 3 5 5 C 1.50691 * 109.47386 * 296.62573 * 4 2 1 6 6 H 1.08007 * 120.00175 * 4.29328 * 5 4 2 7 7 C 1.37877 * 120.00518 * 184.28769 * 5 4 2 8 8 N 1.31515 * 119.99803 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00179 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46818 * 90.00290 * 9 7 5 11 11 H 1.48502 * 109.46707 * 209.99791 * 9 7 5 12 12 H 1.48490 * 109.47433 * 330.00345 * 9 7 5 13 13 N 1.46905 * 109.47251 * 240.00114 * 2 1 3 14 14 C 1.47082 * 110.98869 * 185.86650 * 13 2 1 15 15 C 1.53099 * 109.21472 * 177.64552 * 14 13 2 16 16 O 1.42981 * 109.31246 * 56.79893 * 15 14 13 17 17 C 1.43351 * 113.61445 * 301.03033 * 16 15 14 18 18 C 1.53162 * 109.06697 * 178.16200 * 17 16 15 19 19 C 1.55104 * 108.99977 * 90.08463 * 18 17 16 20 20 S 1.83969 * 100.87155 * 41.67843 * 19 18 17 21 21 C 1.53927 * 108.63040 * 300.78453 * 17 16 15 22 22 C 1.46979 * 110.99750 * 62.16789 * 13 2 1 23 23 H 1.09008 * 109.46874 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46961 * 299.99457 * 1 2 3 25 25 H 1.09001 * 109.47554 * 60.00211 * 1 2 3 26 26 H 1.09004 * 109.47254 * 56.62545 * 4 2 1 27 27 H 1.09004 * 109.47199 * 176.62455 * 4 2 1 28 28 H 0.96999 * 120.00545 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.56204 * 57.70887 * 14 13 2 30 30 H 1.09008 * 109.50064 * 297.54530 * 14 13 2 31 31 H 1.08996 * 109.50124 * 296.83944 * 15 14 13 32 32 H 1.08999 * 109.49972 * 176.75543 * 15 14 13 33 33 H 1.08998 * 109.59842 * 210.03118 * 18 17 16 34 34 H 1.09003 * 109.59693 * 330.14219 * 18 17 16 35 35 H 1.08998 * 111.13653 * 283.77707 * 19 18 17 36 36 H 1.08996 * 111.17191 * 159.59716 * 19 18 17 37 37 H 1.08998 * 110.32212 * 1.18712 * 21 17 16 38 38 H 1.09004 * 110.32894 * 123.39681 * 21 17 16 39 39 H 1.08994 * 109.52521 * 62.74757 * 22 13 2 40 40 H 1.09004 * 109.57546 * 302.59221 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6072 0.0357 2.4782 6 1 0.9685 0.9014 2.3823 7 6 2.0264 -0.3768 3.7253 8 7 2.8044 -1.4306 3.8422 9 14 1.4904 0.5621 5.2487 10 1 0.2190 -0.0096 5.7606 11 1 2.5396 0.4502 6.2936 12 1 1.2864 1.9917 4.9029 13 7 2.0197 -0.6925 -1.1995 14 6 3.4832 -0.8347 -1.1651 15 6 3.9432 -1.6113 -2.4017 16 8 3.4916 -0.9367 -3.5787 17 6 2.0672 -0.7892 -3.6452 18 6 1.7031 -0.0171 -4.9169 19 6 1.4846 -1.0256 -6.0748 20 16 0.5455 -2.3497 -5.2092 21 6 1.4257 -2.1879 -3.6091 22 6 1.5912 0.0034 -2.4212 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 1.6281 -1.7300 1.2800 27 1 3.1284 -0.7739 1.2194 28 1 3.0996 -1.7207 4.7194 29 1 3.7762 -1.3761 -0.2656 30 1 3.9448 0.1528 -1.1630 31 1 3.5249 -2.6175 -2.3759 32 1 5.0316 -1.6696 -2.4107 33 1 0.7884 0.5517 -4.7500 34 1 2.5128 0.6656 -5.1746 35 1 2.4351 -1.4013 -6.4535 36 1 0.8924 -0.5831 -6.8758 37 1 2.1950 -2.9550 -3.5210 38 1 0.7212 -2.2601 -2.7805 39 1 2.0258 1.0027 -2.4427 40 1 0.5039 0.0787 -2.4363 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568261627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:02 Heat of formation + Delta-G solvation = -42.632483 kcal Electronic energy + Delta-G solvation = -19923.451775 eV Core-core repulsion = 17057.196231 eV Total energy + Delta-G solvation = -2866.255543 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.14169 -36.66201 -34.61613 -33.09619 -31.10160 -30.23735 -28.49796 -26.91664 -25.82756 -24.35158 -22.76001 -21.83028 -19.41283 -19.11937 -17.04607 -16.68717 -16.43556 -15.52551 -15.03867 -14.93912 -14.73146 -14.38943 -13.90939 -13.71321 -13.25730 -12.95838 -12.72916 -12.29680 -12.00574 -11.86607 -11.71151 -11.60145 -11.37651 -11.32413 -11.24691 -10.93453 -10.81176 -10.45430 -10.32143 -10.07351 -9.96775 -9.50684 -9.16796 -9.10049 -8.38799 -7.88168 -7.74858 -6.05119 -4.06856 1.80024 2.27195 3.28541 3.35269 3.37708 3.67691 4.10282 4.38281 4.44740 4.59430 4.80828 5.00554 5.07273 5.26797 5.29484 5.31297 5.36689 5.51247 5.53896 5.56716 5.65478 5.72360 5.81042 5.91338 6.03263 6.07274 6.18234 6.25307 6.28812 6.59717 6.81614 7.02274 7.16737 7.38254 7.45186 7.68418 7.78714 7.98923 8.37247 8.98785 9.56871 11.06287 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.036636 B = 0.004375 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.082077 B = 6398.250218 C = 6635.772292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.085 3.915 3 H 0.029 0.971 4 C 0.030 3.970 5 C -0.518 4.518 6 H 0.056 0.944 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.531 5.531 14 C 0.016 3.984 15 C 0.058 3.942 16 O -0.378 6.378 17 C 0.118 3.882 18 C -0.112 4.112 19 C -0.064 4.064 20 S -0.307 6.307 21 C -0.076 4.076 22 C 0.032 3.968 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.031 0.969 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.261 0.739 29 H 0.103 0.897 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.118 0.882 39 H 0.039 0.961 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.636 1.420 -17.095 17.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.021 4.021 3 H 0.047 0.953 4 C -0.007 4.007 5 C -0.557 4.557 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.257 5.257 14 C -0.112 4.112 15 C -0.018 4.018 16 O -0.298 6.298 17 C 0.077 3.923 18 C -0.151 4.151 19 C -0.212 4.212 20 S -0.081 6.081 21 C -0.224 4.224 22 C -0.097 4.097 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.050 0.950 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.070 0.930 29 H 0.121 0.879 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.115 0.885 38 H 0.136 0.864 39 H 0.057 0.943 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.524 0.168 -17.466 17.533 hybrid contribution 0.927 1.856 1.624 2.635 sum -0.597 2.024 -15.842 15.981 Atomic orbital electron populations 1.21764 0.95167 1.01683 1.00200 1.21870 0.95091 0.95389 0.89792 0.95313 1.19207 0.96421 0.95853 0.89190 1.21185 1.30525 1.12849 0.91142 0.92601 1.24980 0.95099 0.95117 0.99050 1.69956 1.34839 1.24731 1.23766 0.86618 0.78347 0.80282 0.82910 1.20624 1.21244 1.19942 1.62342 1.10381 1.50979 1.01965 1.22837 0.88735 1.00056 0.99585 1.22799 0.99355 0.95760 0.83917 1.88077 1.20408 1.78852 1.42422 1.22313 0.81891 0.92825 0.95281 1.22306 1.03439 0.98070 0.91317 1.24276 1.02125 0.95326 0.99464 1.87794 1.52752 1.53126 1.14449 1.24663 1.02386 0.99418 0.95958 1.22844 1.01498 0.95334 0.90068 0.92599 0.91378 0.94961 0.95973 0.95964 0.92981 0.87891 0.94483 0.92070 0.88529 0.88966 0.88989 0.88974 0.87599 0.88509 0.86410 0.94295 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.82 37.16 0.33 -2.07 16 2 C 0.09 1.71 2.12 -67.71 -0.14 1.56 16 3 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 4 C 0.03 0.75 4.16 -27.89 -0.12 0.64 16 5 C -0.52 -14.05 8.47 -34.44 -0.29 -14.34 16 6 H 0.06 1.48 6.79 -52.48 -0.36 1.12 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.53 -9.08 4.01 -226.11 -0.91 -9.98 16 14 C 0.02 0.26 5.20 -3.67 -0.02 0.24 16 15 C 0.06 0.80 6.60 37.21 0.25 1.05 16 16 O -0.38 -5.31 10.19 -35.23 -0.36 -5.67 16 17 C 0.12 1.52 1.01 -89.85 -0.09 1.43 16 18 C -0.11 -1.16 5.50 -25.54 -0.14 -1.30 16 19 C -0.06 -0.62 7.52 38.27 0.29 -0.33 16 20 S -0.31 -3.88 23.22 -107.50 -2.50 -6.38 16 21 C -0.08 -1.01 5.84 37.64 0.22 -0.79 16 22 C 0.03 0.46 3.66 -3.57 -0.01 0.45 16 23 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 24 H 0.07 1.32 6.75 -51.93 -0.35 0.97 16 25 H 0.03 0.50 6.40 -51.93 -0.33 0.17 16 26 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.02 0.58 6.08 -51.93 -0.32 0.26 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.10 1.89 6.01 -51.93 -0.31 1.58 16 30 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.06 0.83 6.23 -51.93 -0.32 0.51 16 32 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.09 0.87 7.85 -51.93 -0.41 0.46 16 34 H 0.09 0.89 8.06 -51.93 -0.42 0.48 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 1.31 6.18 -51.93 -0.32 0.99 16 38 H 0.12 1.71 7.43 -51.93 -0.39 1.32 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 1.24 6.24 -51.93 -0.32 0.92 16 LS Contribution 313.38 15.07 4.72 4.72 Total: -1.00 -28.96 313.38 -9.52 -38.48 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.36 Total: -0.05 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 0.17 Total: -11.92 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.17 Total: -35.38 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.36 Total: -5.67 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -3.88 SS G_CDS: -2.50 Total: -6.38 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.96 -9.52 -38.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568261627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.154 kcal (2) G-P(sol) polarization free energy of solvation -28.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds