Wall clock time and date at job start Mon Mar 30 2020 05:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47306 * 2 1 4 4 C 1.52996 * 109.47399 * 119.99966 * 2 1 3 5 5 C 1.50691 * 109.47386 * 296.62573 * 4 2 1 6 6 H 1.08007 * 120.00175 * 4.29328 * 5 4 2 7 7 C 1.37877 * 120.00518 * 184.28769 * 5 4 2 8 8 N 1.31515 * 119.99803 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00179 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46818 * 90.00290 * 9 7 5 11 11 H 1.48502 * 109.46707 * 209.99791 * 9 7 5 12 12 H 1.48490 * 109.47433 * 330.00345 * 9 7 5 13 13 N 1.46905 * 109.47251 * 240.00114 * 2 1 3 14 14 C 1.47082 * 110.98869 * 185.86650 * 13 2 1 15 15 C 1.53099 * 109.21472 * 177.64552 * 14 13 2 16 16 O 1.42981 * 109.31246 * 56.79893 * 15 14 13 17 17 C 1.43351 * 113.61445 * 301.03033 * 16 15 14 18 18 C 1.53162 * 109.06697 * 178.16200 * 17 16 15 19 19 C 1.55104 * 108.99977 * 90.08463 * 18 17 16 20 20 S 1.83969 * 100.87155 * 41.67843 * 19 18 17 21 21 C 1.53927 * 108.63040 * 300.78453 * 17 16 15 22 22 C 1.46979 * 110.99750 * 62.16789 * 13 2 1 23 23 H 1.09008 * 109.46874 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46961 * 299.99457 * 1 2 3 25 25 H 1.09001 * 109.47554 * 60.00211 * 1 2 3 26 26 H 1.09004 * 109.47254 * 56.62545 * 4 2 1 27 27 H 1.09004 * 109.47199 * 176.62455 * 4 2 1 28 28 H 0.96999 * 120.00545 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.56204 * 57.70887 * 14 13 2 30 30 H 1.09008 * 109.50064 * 297.54530 * 14 13 2 31 31 H 1.08996 * 109.50124 * 296.83944 * 15 14 13 32 32 H 1.08999 * 109.49972 * 176.75543 * 15 14 13 33 33 H 1.08998 * 109.59842 * 210.03118 * 18 17 16 34 34 H 1.09003 * 109.59693 * 330.14219 * 18 17 16 35 35 H 1.08998 * 111.13653 * 283.77707 * 19 18 17 36 36 H 1.08996 * 111.17191 * 159.59716 * 19 18 17 37 37 H 1.08998 * 110.32212 * 1.18712 * 21 17 16 38 38 H 1.09004 * 110.32894 * 123.39681 * 21 17 16 39 39 H 1.08994 * 109.52521 * 62.74757 * 22 13 2 40 40 H 1.09004 * 109.57546 * 302.59221 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6072 0.0357 2.4782 6 1 0.9685 0.9014 2.3823 7 6 2.0264 -0.3768 3.7253 8 7 2.8044 -1.4306 3.8422 9 14 1.4904 0.5621 5.2487 10 1 0.2190 -0.0096 5.7606 11 1 2.5396 0.4502 6.2936 12 1 1.2864 1.9917 4.9029 13 7 2.0197 -0.6925 -1.1995 14 6 3.4832 -0.8347 -1.1651 15 6 3.9432 -1.6113 -2.4017 16 8 3.4916 -0.9367 -3.5787 17 6 2.0672 -0.7892 -3.6452 18 6 1.7031 -0.0171 -4.9169 19 6 1.4846 -1.0256 -6.0748 20 16 0.5455 -2.3497 -5.2092 21 6 1.4257 -2.1879 -3.6091 22 6 1.5912 0.0034 -2.4212 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 1.6281 -1.7300 1.2800 27 1 3.1284 -0.7739 1.2194 28 1 3.0996 -1.7207 4.7194 29 1 3.7762 -1.3761 -0.2656 30 1 3.9448 0.1528 -1.1630 31 1 3.5249 -2.6175 -2.3759 32 1 5.0316 -1.6696 -2.4107 33 1 0.7884 0.5517 -4.7500 34 1 2.5128 0.6656 -5.1746 35 1 2.4351 -1.4013 -6.4535 36 1 0.8924 -0.5831 -6.8758 37 1 2.1950 -2.9550 -3.5210 38 1 0.7212 -2.2601 -2.7805 39 1 2.0258 1.0027 -2.4427 40 1 0.5039 0.0787 -2.4363 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568261627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:01 Heat of formation + Delta-G solvation = -60.377345 kcal Electronic energy + Delta-G solvation = -19924.221249 eV Core-core repulsion = 17057.196231 eV Total energy + Delta-G solvation = -2867.025018 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.32673 -38.10946 -35.61190 -35.05044 -32.76593 -31.30315 -29.78037 -28.58627 -27.12958 -25.70293 -24.37509 -22.99269 -20.80685 -20.45192 -18.73759 -17.94240 -17.60703 -16.86129 -16.60905 -16.25663 -15.96179 -15.70088 -15.33670 -14.88954 -14.70000 -14.21592 -14.00853 -13.76046 -13.50077 -13.17655 -13.05732 -12.91501 -12.72161 -12.62553 -12.57255 -12.42046 -12.32324 -12.17427 -11.86906 -11.48274 -11.23085 -11.06557 -11.01590 -10.53572 -10.47929 -9.29443 -8.73548 -8.19330 -6.28393 0.87305 1.35483 1.40202 1.40553 1.51168 2.39411 2.60568 2.87152 3.14962 3.41599 3.56433 3.85596 3.98752 4.06363 4.08715 4.19104 4.26478 4.30950 4.42381 4.52360 4.57208 4.62630 4.64210 4.69177 4.77136 4.84302 4.88364 4.98557 5.02379 5.12245 5.18861 5.38888 5.47406 5.65835 5.77051 6.02201 6.07140 6.19300 6.32117 6.87090 7.39924 8.92660 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.036636 B = 0.004375 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.082077 B = 6398.250218 C = 6635.772292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.096 3.904 3 H 0.020 0.980 4 C 0.040 3.960 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.003 3.997 8 N -0.931 5.931 9 Si 0.959 3.041 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.264 1.264 13 N -0.536 5.536 14 C 0.018 3.982 15 C 0.066 3.934 16 O -0.380 6.380 17 C 0.119 3.881 18 C -0.109 4.109 19 C -0.049 4.049 20 S -0.336 6.336 21 C -0.071 4.071 22 C 0.034 3.966 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.064 0.936 26 H -0.009 1.009 27 H 0.000 1.000 28 H 0.262 0.738 29 H 0.075 0.925 30 H 0.030 0.970 31 H 0.062 0.938 32 H 0.118 0.882 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.132 0.868 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.040 0.960 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.249 2.824 -18.688 18.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.012 4.012 3 H 0.038 0.962 4 C 0.003 3.997 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.195 4.195 8 N -0.572 5.572 9 Si 0.784 3.216 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.188 1.188 13 N -0.261 5.261 14 C -0.110 4.110 15 C -0.010 4.010 16 O -0.299 6.299 17 C 0.078 3.922 18 C -0.148 4.148 19 C -0.196 4.196 20 S -0.111 6.111 21 C -0.220 4.220 22 C -0.095 4.095 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.009 0.991 27 H 0.018 0.982 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.136 0.864 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.150 0.850 37 H 0.109 0.891 38 H 0.120 0.880 39 H 0.058 0.942 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.145 1.580 -19.082 19.267 hybrid contribution 1.139 1.395 2.066 2.741 sum -1.006 2.975 -17.016 17.304 Atomic orbital electron populations 1.21666 0.93661 1.01520 1.01176 1.21569 0.96196 0.94185 0.89236 0.96183 1.19015 0.94877 0.94519 0.91304 1.21596 1.30311 1.13031 0.92201 0.92052 1.25876 0.95127 0.96003 1.02453 1.70091 1.36142 1.26391 1.24557 0.85532 0.77970 0.79287 0.78782 1.19925 1.20996 1.18803 1.62274 1.10716 1.51049 1.02049 1.22785 0.88480 0.99734 1.00042 1.22763 1.00601 0.95110 0.82558 1.88084 1.21109 1.78761 1.41985 1.22469 0.81243 0.92624 0.95868 1.22334 1.04517 0.98003 0.89965 1.24396 1.02217 0.93565 0.99464 1.87918 1.53504 1.55077 1.14563 1.24511 1.01867 0.99598 0.95992 1.22924 1.02013 0.95342 0.89207 0.93298 0.92642 0.91673 0.99094 0.98208 0.92915 0.90639 0.95160 0.91983 0.86392 0.87609 0.87720 0.88436 0.84953 0.89128 0.88036 0.94168 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.44 8.82 71.98 0.63 -3.81 16 2 C 0.10 3.88 2.12 44.91 0.10 3.97 16 3 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 4 C 0.04 2.06 4.16 29.84 0.12 2.19 16 5 C -0.53 -29.44 8.47 25.60 0.22 -29.23 16 6 H 0.06 3.25 6.79 -2.91 -0.02 3.23 16 7 C 0.00 0.18 5.46 84.65 0.46 0.65 16 8 N -0.93 -55.91 13.29 21.45 0.28 -55.63 16 9 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 13 N -0.54 -18.38 4.01 -869.28 -3.48 -21.86 16 14 C 0.02 0.60 5.20 86.30 0.45 1.05 16 15 C 0.07 1.78 6.60 72.02 0.48 2.25 16 16 O -0.38 -9.95 10.19 -148.98 -1.52 -11.47 16 17 C 0.12 2.84 1.01 -10.29 -0.01 2.83 16 18 C -0.11 -1.89 5.50 31.37 0.17 -1.72 16 19 C -0.05 -0.78 7.52 72.70 0.55 -0.24 16 20 S -0.34 -7.90 23.22 -56.49 -1.31 -9.21 16 21 C -0.07 -1.83 5.84 72.30 0.42 -1.40 16 22 C 0.03 0.93 3.66 86.42 0.32 1.25 16 23 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 24 H 0.05 2.13 6.75 -2.39 -0.02 2.11 16 25 H 0.06 1.91 6.40 -2.39 -0.02 1.89 16 26 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 27 H 0.00 -0.02 6.08 -2.38 -0.01 -0.03 16 28 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 29 H 0.08 2.95 6.01 -2.39 -0.01 2.93 16 30 H 0.03 1.04 8.14 -2.38 -0.02 1.03 16 31 H 0.06 1.67 6.23 -2.39 -0.01 1.65 16 32 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.11 1.59 7.85 -2.39 -0.02 1.57 16 34 H 0.10 1.63 8.06 -2.39 -0.02 1.61 16 35 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 2.40 6.18 -2.39 -0.01 2.39 16 38 H 0.10 2.92 7.43 -2.38 -0.02 2.90 16 39 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.10 2.50 6.24 -2.39 -0.01 2.48 16 Total: -1.00 -63.20 313.38 0.92 -62.28 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 1.01 Total: 12.35 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 3.90 Total: -22.22 kcal Atomic # 7 Polarization: -74.29 SS G_CDS: -3.20 Total: -77.49 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -1.52 Total: -11.47 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -1.31 Total: -9.21 kcal Total: -63.20 0.92 -62.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568261627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.900 kcal (2) G-P(sol) polarization free energy of solvation -63.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds