Wall clock time and date at job start Mon Mar 30 2020 05:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46804 * 2 1 4 4 C 1.52998 * 109.47230 * 119.99941 * 2 1 3 5 5 C 1.50701 * 109.46893 * 182.38355 * 4 2 1 6 6 H 1.08001 * 120.00367 * 5.06478 * 5 4 2 7 7 C 1.37880 * 119.99764 * 185.06005 * 5 4 2 8 8 N 1.31512 * 119.99981 * 180.02562 * 7 5 4 9 9 Si 1.86792 * 120.00066 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47182 * 90.00000 * 9 7 5 11 11 H 1.48501 * 109.47500 * 209.99813 * 9 7 5 12 12 H 1.48501 * 109.47420 * 329.99756 * 9 7 5 13 13 N 1.46904 * 109.47092 * 240.00227 * 2 1 3 14 14 C 1.46999 * 110.99757 * 300.51864 * 13 2 1 15 15 C 1.53092 * 109.26952 * 182.34518 * 14 13 2 16 16 O 1.42980 * 109.28352 * 303.21367 * 15 14 13 17 17 C 1.43373 * 113.59701 * 58.97412 * 16 15 14 18 18 C 1.52557 * 109.37008 * 181.24539 * 17 16 15 19 19 C 1.54191 * 112.69376 * 239.88648 * 18 17 16 20 20 S 1.83937 * 102.58943 * 24.49407 * 19 18 17 21 21 C 1.54506 * 108.28039 * 58.54179 * 17 16 15 22 22 C 1.46980 * 110.99968 * 64.20565 * 13 2 1 23 23 H 1.09001 * 109.46804 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47176 * 299.99559 * 1 2 3 25 25 H 1.09001 * 109.47548 * 60.00421 * 1 2 3 26 26 H 1.09001 * 109.47270 * 302.38568 * 4 2 1 27 27 H 1.08996 * 109.47157 * 62.38260 * 4 2 1 28 28 H 0.96994 * 120.00533 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.50785 * 62.40604 * 14 13 2 30 30 H 1.09001 * 109.53735 * 302.29891 * 14 13 2 31 31 H 1.08999 * 109.50687 * 183.26824 * 15 14 13 32 32 H 1.08998 * 109.53673 * 63.17278 * 15 14 13 33 33 H 1.09005 * 108.84436 * 0.72858 * 18 17 16 34 34 H 1.08993 * 108.84813 * 119.03534 * 18 17 16 35 35 H 1.08999 * 110.78337 * 142.77321 * 19 18 17 36 36 H 1.09005 * 110.78170 * 266.22211 * 19 18 17 37 37 H 1.09000 * 110.77553 * 214.45695 * 21 17 16 38 38 H 1.08997 * 110.77980 * 337.87909 * 21 17 16 39 39 H 1.08993 * 109.53093 * 57.41785 * 22 13 2 40 40 H 1.09001 * 109.52565 * 297.21747 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5459 -0.6702 1.2790 6 1 4.0820 -0.1041 0.5317 7 6 4.2392 -1.3462 2.2606 8 7 5.5533 -1.3013 2.2869 9 14 3.3121 -2.3258 3.5528 10 1 3.1216 -3.7191 3.0755 11 1 4.0903 -2.3380 4.8176 12 1 1.9873 -1.6993 3.7929 13 7 2.0197 -0.6925 -1.1995 14 6 1.5382 -2.0808 -1.2397 15 6 2.1178 -2.7811 -2.4715 16 8 1.7570 -2.0481 -3.6449 17 6 2.2205 -0.6913 -3.6392 18 6 1.7580 0.0067 -4.9144 19 6 2.9325 0.5290 -5.7661 20 16 4.3195 -0.5627 -5.2488 21 6 3.7595 -0.7056 -3.5028 22 6 1.6323 0.0297 -2.4196 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6422 -0.2327 2.1387 27 1 1.7120 -1.7604 1.2281 28 1 6.0412 -1.7771 2.9771 29 1 0.4497 -2.0870 -1.2960 30 1 1.8591 -2.6041 -0.3390 31 1 1.7176 -3.7928 -2.5370 32 1 3.2038 -2.8241 -2.3890 33 1 1.1768 -0.6973 -5.5102 34 1 1.1183 0.8466 -4.6439 35 1 2.7223 0.4101 -6.8290 36 1 3.1500 1.5702 -5.5278 37 1 4.1035 0.1458 -2.9156 38 1 4.1001 -1.6429 -3.0630 39 1 2.0176 1.0484 -2.3779 40 1 0.5455 0.0532 -2.4995 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568261628.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:05 Heat of formation + Delta-G solvation = -32.427420 kcal Electronic energy + Delta-G solvation = -20319.868273 eV Core-core repulsion = 17454.055254 eV Total energy + Delta-G solvation = -2865.813019 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.12637 -36.85411 -34.56994 -32.78900 -31.10340 -30.03211 -28.54432 -27.65690 -25.60419 -24.30292 -22.90370 -21.78796 -19.38002 -18.74555 -16.81542 -16.63537 -16.46865 -15.74508 -15.10158 -14.91594 -14.45969 -14.34774 -14.13166 -13.52660 -13.05549 -12.86119 -12.70234 -12.47040 -12.19587 -11.94777 -11.89775 -11.76959 -11.51126 -11.26656 -11.24086 -10.98993 -10.78947 -10.29769 -10.12188 -9.95621 -9.79978 -9.63724 -9.25846 -9.08269 -8.48809 -7.69968 -7.57400 -5.97339 -3.92294 1.95768 2.41347 3.29329 3.38647 3.39997 3.76806 4.19845 4.47729 4.50187 4.77311 4.88052 4.97405 5.18194 5.32813 5.35787 5.37948 5.44967 5.54340 5.55362 5.61331 5.70271 5.72423 5.77426 5.80998 5.83164 5.92673 6.13192 6.20893 6.29205 6.39510 6.44797 6.65469 7.03665 7.19731 7.30635 7.59988 7.66105 7.85270 8.63993 9.14277 9.65152 11.16387 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.023749 B = 0.005985 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.716647 B = 4677.433738 C = 5166.772187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.096 3.904 3 H 0.077 0.923 4 C -0.007 4.007 5 C -0.493 4.493 6 H 0.079 0.921 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.871 3.129 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.269 1.269 13 N -0.504 5.504 14 C 0.018 3.982 15 C 0.057 3.943 16 O -0.373 6.373 17 C 0.122 3.878 18 C -0.114 4.114 19 C -0.063 4.063 20 S -0.311 6.311 21 C -0.068 4.068 22 C 0.031 3.969 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.044 0.956 26 H 0.017 0.983 27 H 0.013 0.987 28 H 0.260 0.740 29 H 0.035 0.965 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.864 2.031 -12.705 16.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.012 4.012 3 H 0.095 0.905 4 C -0.044 4.044 5 C -0.531 4.531 6 H 0.097 0.903 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.699 3.301 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.194 1.194 13 N -0.227 5.227 14 C -0.110 4.110 15 C -0.020 4.020 16 O -0.292 6.292 17 C 0.081 3.919 18 C -0.153 4.153 19 C -0.211 4.211 20 S -0.084 6.084 21 C -0.216 4.216 22 C -0.099 4.099 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.036 0.964 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.136 0.864 39 H 0.100 0.900 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.314 1.409 -13.347 15.788 hybrid contribution -2.055 -0.062 1.695 2.664 sum -10.369 1.347 -11.652 15.656 Atomic orbital electron populations 1.22557 0.99583 1.01453 1.01095 1.21707 0.89980 0.98569 0.90911 0.90488 1.19704 0.98168 0.94921 0.91644 1.21000 0.88860 1.30713 1.12558 0.90310 1.25001 0.94639 0.96553 0.97447 1.69900 1.06070 1.43805 1.34675 0.86935 0.80346 0.80917 0.81926 1.20548 1.21564 1.19394 1.62307 1.58643 1.01079 1.00694 1.22786 0.97210 0.91144 0.99869 1.22806 1.00530 0.94702 0.83931 1.88082 1.77496 1.22602 1.41050 1.22233 0.91619 0.83707 0.94381 1.21901 0.98251 1.00546 0.94632 1.24059 0.93691 1.00595 1.02790 1.87959 1.39849 1.66022 1.14547 1.24893 0.96107 1.08114 0.92472 1.22927 0.98040 0.98328 0.90618 0.92868 0.92362 0.93658 0.96440 0.96877 0.92984 0.94731 0.88331 0.88725 0.91528 0.89185 0.89820 0.87810 0.89195 0.87715 0.86430 0.90004 0.94183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.87 8.49 37.16 0.32 -2.55 16 2 C 0.10 1.77 2.34 -67.71 -0.16 1.61 16 3 H 0.08 1.46 8.13 -51.93 -0.42 1.03 16 4 C -0.01 -0.16 3.27 -27.88 -0.09 -0.25 16 5 C -0.49 -13.32 9.32 -34.44 -0.32 -13.64 16 6 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 7 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 8 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 9 Si 0.87 21.24 27.37 -169.99 -4.65 16.59 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.31 6.69 56.52 0.38 -5.93 16 13 N -0.50 -8.76 3.92 -226.18 -0.89 -9.65 16 14 C 0.02 0.30 4.87 -3.72 -0.02 0.28 16 15 C 0.06 0.86 6.65 37.20 0.25 1.11 16 16 O -0.37 -5.68 10.12 -35.23 -0.36 -6.04 16 17 C 0.12 1.70 1.01 -89.85 -0.09 1.61 16 18 C -0.11 -1.26 5.84 -26.34 -0.15 -1.42 16 19 C -0.06 -0.67 7.46 37.78 0.28 -0.38 16 20 S -0.31 -4.51 23.26 -107.50 -2.50 -7.01 16 21 C -0.07 -1.05 5.93 37.95 0.23 -0.83 16 22 C 0.03 0.45 3.48 -3.57 -0.01 0.43 16 23 H 0.05 0.81 6.45 -51.93 -0.33 0.47 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.04 0.62 6.56 -51.93 -0.34 0.28 16 26 H 0.02 0.40 7.55 -51.93 -0.39 0.01 16 27 H 0.01 0.29 5.39 -51.93 -0.28 0.01 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.03 0.54 6.43 -51.93 -0.33 0.21 16 30 H 0.10 1.82 6.15 -51.93 -0.32 1.50 16 31 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.07 1.08 5.86 -51.93 -0.30 0.78 16 33 H 0.09 1.00 7.86 -51.93 -0.41 0.59 16 34 H 0.08 0.77 7.55 -51.93 -0.39 0.38 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 1.71 7.83 -51.93 -0.41 1.30 16 38 H 0.12 2.00 5.55 -51.93 -0.29 1.72 16 39 H 0.08 1.13 8.11 -51.93 -0.42 0.71 16 40 H 0.04 0.56 6.56 -51.93 -0.34 0.22 16 LS Contribution 308.50 15.07 4.65 4.65 Total: -1.00 -29.93 308.50 -9.10 -39.03 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.25 Total: 1.46 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 0.13 Total: -12.32 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.11 Total: -36.36 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.36 Total: -6.04 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.65 Total: 16.59 kcal Atomic # 16 Polarization: -4.51 SS G_CDS: -2.50 Total: -7.01 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.93 -9.10 -39.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568261628.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.601 kcal (2) G-P(sol) polarization free energy of solvation -29.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds