Wall clock time and date at job start Mon Mar 30 2020 05:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46804 * 2 1 4 4 C 1.52998 * 109.47230 * 119.99941 * 2 1 3 5 5 C 1.50701 * 109.46893 * 182.38355 * 4 2 1 6 6 H 1.08001 * 120.00367 * 5.06478 * 5 4 2 7 7 C 1.37880 * 119.99764 * 185.06005 * 5 4 2 8 8 N 1.31512 * 119.99981 * 180.02562 * 7 5 4 9 9 Si 1.86792 * 120.00066 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47182 * 90.00000 * 9 7 5 11 11 H 1.48501 * 109.47500 * 209.99813 * 9 7 5 12 12 H 1.48501 * 109.47420 * 329.99756 * 9 7 5 13 13 N 1.46904 * 109.47092 * 240.00227 * 2 1 3 14 14 C 1.46999 * 110.99757 * 300.51864 * 13 2 1 15 15 C 1.53092 * 109.26952 * 182.34518 * 14 13 2 16 16 O 1.42980 * 109.28352 * 303.21367 * 15 14 13 17 17 C 1.43373 * 113.59701 * 58.97412 * 16 15 14 18 18 C 1.52557 * 109.37008 * 181.24539 * 17 16 15 19 19 C 1.54191 * 112.69376 * 239.88648 * 18 17 16 20 20 S 1.83937 * 102.58943 * 24.49407 * 19 18 17 21 21 C 1.54506 * 108.28039 * 58.54179 * 17 16 15 22 22 C 1.46980 * 110.99968 * 64.20565 * 13 2 1 23 23 H 1.09001 * 109.46804 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47176 * 299.99559 * 1 2 3 25 25 H 1.09001 * 109.47548 * 60.00421 * 1 2 3 26 26 H 1.09001 * 109.47270 * 302.38568 * 4 2 1 27 27 H 1.08996 * 109.47157 * 62.38260 * 4 2 1 28 28 H 0.96994 * 120.00533 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.50785 * 62.40604 * 14 13 2 30 30 H 1.09001 * 109.53735 * 302.29891 * 14 13 2 31 31 H 1.08999 * 109.50687 * 183.26824 * 15 14 13 32 32 H 1.08998 * 109.53673 * 63.17278 * 15 14 13 33 33 H 1.09005 * 108.84436 * 0.72858 * 18 17 16 34 34 H 1.08993 * 108.84813 * 119.03534 * 18 17 16 35 35 H 1.08999 * 110.78337 * 142.77321 * 19 18 17 36 36 H 1.09005 * 110.78170 * 266.22211 * 19 18 17 37 37 H 1.09000 * 110.77553 * 214.45695 * 21 17 16 38 38 H 1.08997 * 110.77980 * 337.87909 * 21 17 16 39 39 H 1.08993 * 109.53093 * 57.41785 * 22 13 2 40 40 H 1.09001 * 109.52565 * 297.21747 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5459 -0.6702 1.2790 6 1 4.0820 -0.1041 0.5317 7 6 4.2392 -1.3462 2.2606 8 7 5.5533 -1.3013 2.2869 9 14 3.3121 -2.3258 3.5528 10 1 3.1216 -3.7191 3.0755 11 1 4.0903 -2.3380 4.8176 12 1 1.9873 -1.6993 3.7929 13 7 2.0197 -0.6925 -1.1995 14 6 1.5382 -2.0808 -1.2397 15 6 2.1178 -2.7811 -2.4715 16 8 1.7570 -2.0481 -3.6449 17 6 2.2205 -0.6913 -3.6392 18 6 1.7580 0.0067 -4.9144 19 6 2.9325 0.5290 -5.7661 20 16 4.3195 -0.5627 -5.2488 21 6 3.7595 -0.7056 -3.5028 22 6 1.6323 0.0297 -2.4196 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6422 -0.2327 2.1387 27 1 1.7120 -1.7604 1.2281 28 1 6.0412 -1.7771 2.9771 29 1 0.4497 -2.0870 -1.2960 30 1 1.8591 -2.6041 -0.3390 31 1 1.7176 -3.7928 -2.5370 32 1 3.2038 -2.8241 -2.3890 33 1 1.1768 -0.6973 -5.5102 34 1 1.1183 0.8466 -4.6439 35 1 2.7223 0.4101 -6.8290 36 1 3.1500 1.5702 -5.5278 37 1 4.1035 0.1458 -2.9156 38 1 4.1001 -1.6429 -3.0630 39 1 2.0176 1.0484 -2.3779 40 1 0.5455 0.0532 -2.4995 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568261628.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:04 Heat of formation + Delta-G solvation = -52.019728 kcal Electronic energy + Delta-G solvation = -20320.717859 eV Core-core repulsion = 17454.055254 eV Total energy + Delta-G solvation = -2866.662605 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.34142 -38.20683 -35.62601 -34.80097 -32.67032 -31.13025 -30.03776 -29.09463 -26.82220 -25.48886 -24.54691 -23.13248 -20.67373 -20.06952 -18.77284 -17.94922 -17.64325 -17.04545 -16.46827 -16.14725 -16.04830 -15.60384 -15.28546 -14.81417 -14.69908 -14.22042 -14.02282 -13.89014 -13.71880 -13.36195 -13.06129 -13.00522 -12.86692 -12.61195 -12.40928 -12.22891 -12.15132 -12.00363 -11.70871 -11.41692 -11.31157 -11.15222 -10.99876 -10.66662 -10.44182 -8.97749 -8.74581 -8.17075 -6.15886 0.89056 1.34625 1.35760 1.38223 1.48236 2.41150 2.64947 2.94940 3.20712 3.44268 3.66780 3.91493 4.03426 4.06801 4.09446 4.15802 4.22559 4.36574 4.40265 4.46671 4.54627 4.61959 4.65119 4.68802 4.79138 4.83336 4.91871 4.96823 5.04797 5.09890 5.11472 5.19891 5.28254 5.53096 5.74364 6.11761 6.27562 6.30971 6.50215 6.92528 7.44908 9.00129 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.023749 B = 0.005985 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.716647 B = 4677.433738 C = 5166.772187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.099 3.901 3 H 0.066 0.934 4 C -0.005 4.005 5 C -0.485 4.485 6 H 0.036 0.964 7 C -0.001 4.001 8 N -0.957 5.957 9 Si 0.939 3.061 10 H -0.271 1.271 11 H -0.292 1.292 12 H -0.248 1.248 13 N -0.531 5.531 14 C 0.023 3.977 15 C 0.060 3.940 16 O -0.375 6.375 17 C 0.123 3.877 18 C -0.111 4.111 19 C -0.045 4.045 20 S -0.358 6.358 21 C -0.063 4.063 22 C 0.036 3.964 23 H 0.056 0.944 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.260 0.740 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.045 0.955 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.120 2.358 -13.669 19.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.009 4.009 3 H 0.084 0.916 4 C -0.043 4.043 5 C -0.524 4.524 6 H 0.055 0.945 7 C -0.196 4.196 8 N -0.600 5.600 9 Si 0.764 3.236 10 H -0.197 1.197 11 H -0.219 1.219 12 H -0.172 1.172 13 N -0.255 5.255 14 C -0.105 4.105 15 C -0.016 4.016 16 O -0.294 6.294 17 C 0.082 3.918 18 C -0.149 4.149 19 C -0.192 4.192 20 S -0.132 6.132 21 C -0.211 4.211 22 C -0.094 4.094 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.136 0.864 32 H 0.063 0.937 33 H 0.115 0.885 34 H 0.130 0.870 35 H 0.147 0.853 36 H 0.125 0.875 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.599 1.746 -14.330 18.518 hybrid contribution -0.967 -0.087 1.906 2.139 sum -12.566 1.658 -12.424 17.748 Atomic orbital electron populations 1.22412 0.96404 1.02109 1.02593 1.21505 0.92396 0.97284 0.89693 0.91609 1.19651 0.94715 0.95883 0.94005 1.21234 0.91478 1.28906 1.10743 0.94535 1.25895 0.95369 0.98151 1.00155 1.70077 1.08124 1.45736 1.36043 0.85833 0.79631 0.79580 0.78577 1.19668 1.21858 1.17159 1.62182 1.59916 1.01795 1.01583 1.22704 0.98063 0.90536 0.99234 1.22779 0.99331 0.95818 0.83689 1.88082 1.77290 1.23245 1.40817 1.22422 0.90080 0.83447 0.95873 1.21916 0.98542 1.01367 0.93109 1.24249 0.90768 1.00160 1.04056 1.88103 1.43031 1.67884 1.14177 1.24715 0.97848 1.05920 0.92639 1.22959 0.99008 0.98167 0.89245 0.92545 0.91624 0.91452 0.96277 0.96252 0.93165 0.93043 0.90864 0.86423 0.93714 0.88547 0.87012 0.85334 0.87498 0.89544 0.89003 0.89562 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.80 8.49 71.98 0.61 -4.19 16 2 C 0.10 3.54 2.34 44.91 0.10 3.64 16 3 H 0.07 2.46 8.13 -2.39 -0.02 2.44 16 4 C -0.01 -0.22 3.27 29.85 0.10 -0.13 16 5 C -0.49 -26.98 9.32 25.60 0.24 -26.74 16 6 H 0.04 2.28 7.99 -2.91 -0.02 2.26 16 7 C 0.00 -0.04 5.47 84.66 0.46 0.42 16 8 N -0.96 -60.48 13.96 21.45 0.30 -60.18 16 9 Si 0.94 44.07 27.37 68.60 1.88 45.95 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 12 H -0.25 -10.70 6.69 99.48 0.67 -10.03 16 13 N -0.53 -18.16 3.92 -869.49 -3.41 -21.57 16 14 C 0.02 0.73 4.87 86.31 0.42 1.15 16 15 C 0.06 1.80 6.65 72.01 0.48 2.28 16 16 O -0.38 -10.82 10.12 -148.98 -1.51 -12.32 16 17 C 0.12 3.24 1.01 -10.29 -0.01 3.23 16 18 C -0.11 -2.06 5.84 30.85 0.18 -1.88 16 19 C -0.04 -0.81 7.46 72.39 0.54 -0.27 16 20 S -0.36 -10.31 23.26 -56.49 -1.31 -11.63 16 21 C -0.06 -2.00 5.93 72.49 0.43 -1.57 16 22 C 0.04 0.96 3.48 86.42 0.30 1.26 16 23 H 0.06 1.51 6.45 -2.39 -0.02 1.49 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.07 1.55 6.56 -2.39 -0.02 1.53 16 26 H 0.02 0.84 7.55 -2.39 -0.02 0.82 16 27 H 0.02 0.84 5.39 -2.39 -0.01 0.82 16 28 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 29 H 0.05 1.47 6.43 -2.39 -0.02 1.45 16 30 H 0.07 2.70 6.15 -2.39 -0.01 2.68 16 31 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 32 H 0.04 1.53 5.86 -2.39 -0.01 1.51 16 33 H 0.10 1.75 7.86 -2.38 -0.02 1.73 16 34 H 0.11 1.52 7.55 -2.39 -0.02 1.50 16 35 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.09 2.98 7.83 -2.39 -0.02 2.96 16 38 H 0.09 3.36 5.55 -2.39 -0.01 3.35 16 39 H 0.09 2.23 8.11 -2.39 -0.02 2.21 16 40 H 0.06 1.38 6.56 -2.39 -0.02 1.36 16 Total: -1.00 -67.27 308.50 0.78 -66.50 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.98 Total: 16.06 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 3.85 Total: -22.80 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -3.11 Total: -81.76 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -1.51 Total: -12.32 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.95 kcal Atomic # 16 Polarization: -10.31 SS G_CDS: -1.31 Total: -11.63 kcal Total: -67.27 0.78 -66.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568261628.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.478 kcal (2) G-P(sol) polarization free energy of solvation -67.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds