Wall clock time and date at job start Mon Mar 30 2020 05:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00174 * 2 1 4 4 H 1.48496 * 109.47582 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47139 * 300.00299 * 3 2 1 6 6 H 1.48501 * 109.47117 * 59.99689 * 3 2 1 7 7 C 1.37877 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00083 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00444 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47417 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47223 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.46999 * 179.97438 * 11 10 9 13 13 C 1.47090 * 110.99091 * 313.70011 * 12 11 10 14 14 C 1.53094 * 109.21468 * 177.64661 * 13 12 11 15 15 O 1.42983 * 109.31377 * 56.79949 * 14 13 12 16 16 C 1.43353 * 113.61231 * 301.03092 * 15 14 13 17 17 C 1.53156 * 109.06045 * 178.16649 * 16 15 14 18 18 C 1.55097 * 109.00617 * 90.08614 * 17 16 15 19 19 S 1.83970 * 100.87564 * 41.67184 * 18 17 16 20 20 C 1.53941 * 108.62644 * 300.78283 * 16 15 14 21 21 C 1.46984 * 111.00062 * 189.99824 * 12 11 10 22 22 H 0.96991 * 120.00210 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47328 * 59.99443 * 9 7 2 24 24 H 1.08999 * 109.46745 * 299.99940 * 9 7 2 25 25 H 1.09003 * 109.47351 * 59.99507 * 10 9 7 26 26 H 1.08999 * 109.47061 * 299.99682 * 10 9 7 27 27 H 1.09001 * 109.46811 * 60.00139 * 11 10 9 28 28 H 1.08999 * 109.47111 * 299.99981 * 11 10 9 29 29 H 1.08992 * 109.55576 * 57.70629 * 13 12 11 30 30 H 1.09000 * 109.49284 * 297.54836 * 13 12 11 31 31 H 1.09002 * 109.50344 * 296.83562 * 14 13 12 32 32 H 1.09003 * 109.49842 * 176.75879 * 14 13 12 33 33 H 1.09003 * 109.59334 * 210.02279 * 17 16 15 34 34 H 1.09002 * 109.60202 * 330.13925 * 17 16 15 35 35 H 1.09006 * 111.13909 * 283.77168 * 18 17 16 36 36 H 1.09003 * 111.14415 * 159.57904 * 18 17 16 37 37 H 1.08997 * 110.32569 * 1.19122 * 20 16 15 38 38 H 1.08996 * 110.32206 * 123.30009 * 20 16 15 39 39 H 1.09005 * 109.51899 * 62.74980 * 21 12 11 40 40 H 1.09002 * 109.52358 * 302.56448 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 7 2.4349 -6.1037 -0.0024 13 6 3.4985 -5.8872 -0.9951 14 6 4.5001 -7.0426 -0.9205 15 8 3.8117 -8.2791 -1.1244 16 6 2.7729 -8.5227 -0.1670 17 6 2.0781 -9.8443 -0.5082 18 6 2.8005 -11.0004 0.2315 19 16 3.0923 -10.2309 1.8769 20 6 3.3955 -8.5383 1.2408 21 6 1.7501 -7.3821 -0.2411 22 1 -0.4850 0.8399 -0.0004 23 1 0.6247 -2.5563 -0.8918 24 1 0.6241 -2.5575 0.8880 25 1 2.8713 -3.6047 0.8890 26 1 2.8725 -3.6040 -0.8909 27 1 0.8540 -5.0447 -0.8923 28 1 0.8532 -5.0450 0.8877 29 1 4.0096 -4.9482 -0.7832 30 1 3.0620 -5.8477 -1.9931 31 1 4.9763 -7.0487 0.0600 32 1 5.2588 -6.9168 -1.6929 33 1 1.0362 -9.8020 -0.1910 34 1 2.1232 -10.0141 -1.5840 35 1 3.7418 -11.2522 -0.2571 36 1 2.1570 -11.8761 0.3157 37 1 4.4660 -8.3414 1.1835 38 1 2.9090 -7.7999 1.8780 39 1 1.2894 -7.3696 -1.2290 40 1 0.9823 -7.5314 0.5180 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577865177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:47 Heat of formation + Delta-G solvation = -48.432050 kcal Electronic energy + Delta-G solvation = -19275.176728 eV Core-core repulsion = 16408.669696 eV Total energy + Delta-G solvation = -2866.507032 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.32813 -36.60852 -34.76052 -33.56966 -31.43734 -30.30017 -29.00418 -27.21985 -25.31067 -24.27230 -23.05265 -21.37967 -19.88923 -19.45490 -17.18620 -16.76309 -16.27378 -15.83300 -15.41566 -15.17719 -14.93796 -14.44758 -14.31324 -13.94578 -13.56221 -13.13561 -12.87228 -12.39286 -12.17865 -12.12269 -11.86332 -11.75144 -11.59291 -11.48211 -11.36746 -10.90299 -10.67611 -10.54222 -10.45546 -10.25085 -9.72956 -9.63703 -9.39092 -9.06838 -8.37889 -8.24302 -7.87874 -6.02841 -4.05265 1.66227 2.13230 3.29060 3.36666 3.40577 3.47362 3.83927 4.21841 4.38997 4.44007 4.63577 4.83538 4.88318 5.00646 5.06756 5.20914 5.27574 5.33207 5.33905 5.39911 5.46649 5.54312 5.60496 5.69808 5.77993 5.85564 5.91382 5.93814 6.19722 6.58229 6.66521 6.93570 6.98279 7.16833 7.21254 7.63701 7.77483 7.96779 8.39462 9.01928 9.59083 11.08628 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.041340 B = 0.003394 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.148507 B = 8248.548947 C = 8384.117493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.111 4.111 11 C 0.056 3.944 12 N -0.536 5.536 13 C 0.012 3.988 14 C 0.057 3.943 15 O -0.376 6.376 16 C 0.118 3.882 17 C -0.113 4.113 18 C -0.064 4.064 19 S -0.303 6.303 20 C -0.079 4.079 21 C 0.034 3.966 22 H 0.260 0.740 23 H 0.014 0.986 24 H 0.017 0.983 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.031 0.969 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.045 0.955 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.686 -20.682 -1.536 21.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.149 4.149 11 C -0.071 4.071 12 N -0.261 5.261 13 C -0.116 4.116 14 C -0.019 4.019 15 O -0.295 6.295 16 C 0.077 3.923 17 C -0.152 4.152 18 C -0.212 4.212 19 S -0.077 6.077 20 C -0.227 4.227 21 C -0.096 4.096 22 H 0.070 0.930 23 H 0.032 0.968 24 H 0.035 0.965 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.135 0.865 39 H 0.063 0.937 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.799 -21.169 -0.084 21.949 hybrid contribution -0.015 1.782 -1.729 2.483 sum 5.784 -19.388 -1.813 20.313 Atomic orbital electron populations 1.69971 1.06069 1.26514 1.50943 1.25030 0.94852 0.99302 0.95326 0.86541 0.80117 0.83784 0.77593 1.19726 1.21038 1.20974 1.21266 0.93038 0.91009 1.50448 0.92656 1.19067 0.93984 0.91322 0.97186 1.21787 0.99401 0.92979 1.00756 1.22337 0.93917 0.90288 1.00549 1.62346 1.13297 1.02067 1.48398 1.22895 0.94285 1.00014 0.94389 1.22799 0.94200 0.82792 1.02133 1.88107 1.49443 1.39350 1.52614 1.22322 0.87906 0.94987 0.87091 1.22312 0.99888 0.90475 1.02525 1.24290 1.03775 1.00016 0.93149 1.87854 1.94101 1.10247 1.15508 1.24659 1.05066 0.94827 0.98152 1.22832 0.95892 0.89703 1.01167 0.93045 0.96802 0.96506 0.92474 0.93176 0.95084 0.90745 0.88197 0.94007 0.91982 0.88314 0.88817 0.88847 0.88892 0.87448 0.88474 0.86474 0.93712 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 10 C -0.11 -2.22 4.42 -26.73 -0.12 -2.34 16 11 C 0.06 0.93 5.28 -3.82 -0.02 0.91 16 12 N -0.54 -7.56 4.29 -234.09 -1.00 -8.57 16 13 C 0.01 0.16 4.94 -3.67 -0.02 0.14 16 14 C 0.06 0.65 6.60 37.21 0.25 0.89 16 15 O -0.38 -4.53 10.19 -35.23 -0.36 -4.89 16 16 C 0.12 1.30 1.01 -89.85 -0.09 1.20 16 17 C -0.11 -0.99 5.50 -25.54 -0.14 -1.14 16 18 C -0.06 -0.54 7.52 38.27 0.29 -0.25 16 19 S -0.30 -3.41 23.22 -107.50 -2.50 -5.91 16 20 C -0.08 -0.90 5.84 37.65 0.22 -0.68 16 21 C 0.03 0.41 3.90 -3.58 -0.01 0.39 16 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.05 0.97 6.28 -51.93 -0.33 0.65 16 27 H 0.03 0.53 8.08 -51.93 -0.42 0.11 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.10 1.39 6.05 -51.93 -0.31 1.07 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.68 6.23 -51.93 -0.32 0.36 16 32 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.09 0.74 7.85 -51.93 -0.41 0.33 16 34 H 0.09 0.77 8.06 -51.93 -0.42 0.35 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 1.12 6.18 -51.93 -0.32 0.80 16 38 H 0.12 1.44 7.43 -51.93 -0.39 1.05 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 320.03 15.07 4.82 4.82 Total: -1.00 -30.20 320.03 -10.20 -40.41 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -6.68 Total: -2.44 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -0.20 Total: -13.85 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: -0.27 Total: -34.69 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.36 Total: -4.89 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -2.50 Total: -5.91 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.20 -10.20 -40.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577865177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.026 kcal (2) G-P(sol) polarization free energy of solvation -30.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds