Wall clock time and date at job start Mon Mar 30 2020 05:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00174 * 2 1 4 4 H 1.48496 * 109.47582 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47139 * 300.00299 * 3 2 1 6 6 H 1.48501 * 109.47117 * 59.99689 * 3 2 1 7 7 C 1.37877 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00083 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00444 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47417 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47223 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.46999 * 179.97438 * 11 10 9 13 13 C 1.47090 * 110.99091 * 313.70011 * 12 11 10 14 14 C 1.53094 * 109.21468 * 177.64661 * 13 12 11 15 15 O 1.42983 * 109.31377 * 56.79949 * 14 13 12 16 16 C 1.43353 * 113.61231 * 301.03092 * 15 14 13 17 17 C 1.53156 * 109.06045 * 178.16649 * 16 15 14 18 18 C 1.55097 * 109.00617 * 90.08614 * 17 16 15 19 19 S 1.83970 * 100.87564 * 41.67184 * 18 17 16 20 20 C 1.53941 * 108.62644 * 300.78283 * 16 15 14 21 21 C 1.46984 * 111.00062 * 189.99824 * 12 11 10 22 22 H 0.96991 * 120.00210 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47328 * 59.99443 * 9 7 2 24 24 H 1.08999 * 109.46745 * 299.99940 * 9 7 2 25 25 H 1.09003 * 109.47351 * 59.99507 * 10 9 7 26 26 H 1.08999 * 109.47061 * 299.99682 * 10 9 7 27 27 H 1.09001 * 109.46811 * 60.00139 * 11 10 9 28 28 H 1.08999 * 109.47111 * 299.99981 * 11 10 9 29 29 H 1.08992 * 109.55576 * 57.70629 * 13 12 11 30 30 H 1.09000 * 109.49284 * 297.54836 * 13 12 11 31 31 H 1.09002 * 109.50344 * 296.83562 * 14 13 12 32 32 H 1.09003 * 109.49842 * 176.75879 * 14 13 12 33 33 H 1.09003 * 109.59334 * 210.02279 * 17 16 15 34 34 H 1.09002 * 109.60202 * 330.13925 * 17 16 15 35 35 H 1.09006 * 111.13909 * 283.77168 * 18 17 16 36 36 H 1.09003 * 111.14415 * 159.57904 * 18 17 16 37 37 H 1.08997 * 110.32569 * 1.19122 * 20 16 15 38 38 H 1.08996 * 110.32206 * 123.30009 * 20 16 15 39 39 H 1.09005 * 109.51899 * 62.74980 * 21 12 11 40 40 H 1.09002 * 109.52358 * 302.56448 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 7 2.4349 -6.1037 -0.0024 13 6 3.4985 -5.8872 -0.9951 14 6 4.5001 -7.0426 -0.9205 15 8 3.8117 -8.2791 -1.1244 16 6 2.7729 -8.5227 -0.1670 17 6 2.0781 -9.8443 -0.5082 18 6 2.8005 -11.0004 0.2315 19 16 3.0923 -10.2309 1.8769 20 6 3.3955 -8.5383 1.2408 21 6 1.7501 -7.3821 -0.2411 22 1 -0.4850 0.8399 -0.0004 23 1 0.6247 -2.5563 -0.8918 24 1 0.6241 -2.5575 0.8880 25 1 2.8713 -3.6047 0.8890 26 1 2.8725 -3.6040 -0.8909 27 1 0.8540 -5.0447 -0.8923 28 1 0.8532 -5.0450 0.8877 29 1 4.0096 -4.9482 -0.7832 30 1 3.0620 -5.8477 -1.9931 31 1 4.9763 -7.0487 0.0600 32 1 5.2588 -6.9168 -1.6929 33 1 1.0362 -9.8020 -0.1910 34 1 2.1232 -10.0141 -1.5840 35 1 3.7418 -11.2522 -0.2571 36 1 2.1570 -11.8761 0.3157 37 1 4.4660 -8.3414 1.1835 38 1 2.9090 -7.7999 1.8780 39 1 1.2894 -7.3696 -1.2290 40 1 0.9823 -7.5314 0.5180 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577865177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:46 Heat of formation + Delta-G solvation = -66.972944 kcal Electronic energy + Delta-G solvation = -19275.980721 eV Core-core repulsion = 16408.669696 eV Total energy + Delta-G solvation = -2867.311025 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.29869 -37.85258 -35.60667 -35.48382 -33.22882 -31.18021 -30.10324 -28.70161 -26.65892 -25.28907 -24.46846 -22.73443 -21.31155 -20.45462 -18.54661 -18.00833 -17.55111 -16.98547 -16.62980 -16.44996 -16.09773 -15.78641 -15.47380 -15.14242 -14.71553 -14.29823 -13.99058 -13.84282 -13.71592 -13.22069 -13.02021 -12.95409 -12.78862 -12.70342 -12.49124 -12.42581 -12.38246 -11.98798 -11.67320 -11.45394 -11.36205 -11.19273 -11.03592 -10.57794 -10.51847 -9.40584 -8.75343 -8.21668 -6.32650 0.85775 1.34037 1.39328 1.39761 1.52985 2.39490 2.57848 2.78620 3.11866 3.39033 3.52086 3.82795 3.95452 4.03519 4.06176 4.12832 4.19434 4.27936 4.40568 4.46927 4.55414 4.60097 4.63362 4.64396 4.74595 4.79093 4.83734 4.94193 4.97609 5.04252 5.11252 5.21172 5.49410 5.70496 5.83365 5.91445 5.95347 6.08773 6.24122 6.84522 7.36882 8.90493 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.041340 B = 0.003394 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.148507 B = 8248.548947 C = 8384.117493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.060 0.940 9 C 0.025 3.975 10 C -0.095 4.095 11 C 0.068 3.932 12 N -0.537 5.537 13 C 0.011 3.989 14 C 0.061 3.939 15 O -0.382 6.382 16 C 0.120 3.880 17 C -0.111 4.111 18 C -0.049 4.049 19 S -0.340 6.340 20 C -0.071 4.071 21 C 0.034 3.966 22 H 0.263 0.737 23 H -0.011 1.011 24 H -0.008 1.008 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.026 0.974 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.035 0.965 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.130 0.870 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.044 0.956 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.845 -21.604 -2.081 22.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.579 4.579 8 H 0.078 0.922 9 C -0.012 4.012 10 C -0.132 4.132 11 C -0.060 4.060 12 N -0.262 5.262 13 C -0.117 4.117 14 C -0.015 4.015 15 O -0.301 6.301 16 C 0.079 3.921 17 C -0.150 4.150 18 C -0.197 4.197 19 S -0.115 6.115 20 C -0.220 4.220 21 C -0.095 4.095 22 H 0.072 0.928 23 H 0.008 0.992 24 H 0.010 0.990 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.148 0.852 37 H 0.113 0.887 38 H 0.123 0.877 39 H 0.062 0.938 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.971 -22.113 -0.630 23.195 hybrid contribution -0.400 2.026 -1.568 2.593 sum 6.572 -20.087 -2.199 21.249 Atomic orbital electron populations 1.70099 1.07812 1.27719 1.51787 1.25987 0.95771 1.03404 0.94752 0.85399 0.79126 0.78760 0.77769 1.18504 1.20386 1.20409 1.21711 0.93546 0.92321 1.50346 0.92158 1.18967 0.94408 0.93104 0.94745 1.21521 0.98149 0.92664 1.00905 1.22056 0.93850 0.89860 1.00210 1.62308 1.12921 1.01962 1.49013 1.22933 0.94343 1.00791 0.93642 1.22843 0.93804 0.81684 1.03184 1.88109 1.49653 1.39419 1.52923 1.22420 0.87371 0.95536 0.86758 1.22340 1.00176 0.89247 1.03227 1.24391 1.04467 1.00305 0.90508 1.87999 1.94223 1.10803 1.18454 1.24538 1.04727 0.94536 0.98161 1.22900 0.96394 0.88975 1.01267 0.92775 0.99219 0.98980 0.92637 0.92553 0.95609 0.91035 0.88990 0.94695 0.91639 0.86238 0.87777 0.87749 0.88375 0.85188 0.88722 0.87741 0.93767 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.96 44.19 29.54 68.60 2.03 46.21 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.54 -30.77 9.11 25.60 0.23 -30.53 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.33 4.97 29.85 0.15 1.48 16 10 C -0.09 -3.81 4.42 30.59 0.14 -3.68 16 11 C 0.07 2.27 5.28 86.30 0.46 2.73 16 12 N -0.54 -14.80 4.29 -894.52 -3.83 -18.63 16 13 C 0.01 0.28 4.94 86.30 0.43 0.71 16 14 C 0.06 1.27 6.60 72.01 0.48 1.75 16 15 O -0.38 -8.38 10.19 -148.98 -1.52 -9.90 16 16 C 0.12 2.42 1.01 -10.30 -0.01 2.41 16 17 C -0.11 -1.67 5.50 31.36 0.17 -1.49 16 18 C -0.05 -0.70 7.52 72.70 0.55 -0.15 16 19 S -0.34 -7.21 23.22 -56.49 -1.31 -8.52 16 20 C -0.07 -1.55 5.84 72.30 0.42 -1.12 16 21 C 0.03 0.78 3.90 86.42 0.34 1.11 16 22 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 23 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 24 H -0.01 -0.47 8.14 -2.39 -0.02 -0.48 16 25 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.06 2.19 6.28 -2.39 -0.01 2.17 16 27 H 0.03 0.89 8.08 -2.39 -0.02 0.87 16 28 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.09 2.48 6.05 -2.39 -0.01 2.47 16 30 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.33 6.23 -2.39 -0.01 1.31 16 32 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.10 1.37 7.85 -2.39 -0.02 1.35 16 34 H 0.10 1.40 8.06 -2.39 -0.02 1.38 16 35 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.09 2.07 6.18 -2.39 -0.01 2.06 16 38 H 0.10 2.52 7.43 -2.39 -0.02 2.50 16 39 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -64.76 320.03 0.45 -64.31 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 1.00 Total: 9.58 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 3.80 Total: -26.41 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -3.55 Total: -75.27 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -1.52 Total: -9.90 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -7.21 SS G_CDS: -1.31 Total: -8.52 kcal Total: -64.76 0.45 -64.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577865177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.661 kcal (2) G-P(sol) polarization free energy of solvation -64.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds