Wall clock time and date at job start Mon Mar 30 2020 05:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46988 * 180.02562 * 11 10 9 13 13 C 1.47001 * 111.00187 * 66.04168 * 12 11 10 14 14 C 1.53097 * 109.24110 * 177.61272 * 13 12 11 15 15 O 1.42966 * 109.28221 * 56.83134 * 14 13 12 16 16 C 1.43370 * 113.63790 * 301.03672 * 15 14 13 17 17 C 1.52574 * 109.35090 * 299.50730 * 16 15 14 18 18 C 1.54180 * 112.69658 * 239.88066 * 17 16 15 19 19 S 1.83941 * 102.58778 * 24.50299 * 18 17 16 20 20 C 1.54490 * 108.29753 * 176.81870 * 16 15 14 21 21 C 1.46978 * 111.00095 * 302.34976 * 12 11 10 22 22 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 26 26 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 27 27 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 28 28 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 29 29 H 1.08996 * 109.51482 * 297.54333 * 13 12 11 30 30 H 1.09002 * 109.51079 * 57.63590 * 13 12 11 31 31 H 1.09000 * 109.50184 * 176.77377 * 14 13 12 32 32 H 1.09002 * 109.50341 * 296.88461 * 14 13 12 33 33 H 1.08997 * 108.84440 * 0.73134 * 17 16 15 34 34 H 1.09000 * 108.84444 * 119.03350 * 17 16 15 35 35 H 1.08995 * 110.78928 * 266.22222 * 18 17 16 36 36 H 1.09002 * 110.78448 * 142.77201 * 18 17 16 37 37 H 1.09007 * 110.77901 * 214.44090 * 20 16 15 38 38 H 1.09003 * 110.77808 * 337.66855 * 20 16 15 39 39 H 1.08996 * 109.51712 * 302.58252 * 21 12 11 40 40 H 1.09004 * 109.51475 * 62.75183 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 6 5.5515 -2.6366 0.0178 12 7 6.0411 -4.0216 0.0220 13 6 5.6971 -4.7058 -1.2328 14 6 6.2764 -6.1227 -1.2100 15 8 5.7821 -6.8165 -0.0618 16 6 6.1075 -6.1779 1.1799 17 6 7.6243 -6.0979 1.3249 18 6 8.1423 -6.8375 2.5746 19 16 6.8175 -8.0749 2.8860 20 6 5.4503 -6.9803 2.3248 21 6 5.5191 -4.7613 1.1798 22 1 -0.4849 0.8400 0.0004 23 1 3.8786 -0.6821 -0.8838 24 1 3.8711 -0.6785 0.8962 25 1 3.6545 -3.1486 0.9003 26 1 3.6618 -3.1522 -0.8796 27 1 5.9188 -2.1245 -0.8715 28 1 5.9108 -2.1211 0.9084 29 1 4.6131 -4.7573 -1.3340 30 1 6.1154 -4.1542 -2.0747 31 1 5.9755 -6.6534 -2.1133 32 1 7.3641 -6.0705 -1.1633 33 1 8.0861 -6.5356 0.4399 34 1 7.9169 -5.0499 1.3893 35 1 8.2381 -6.1529 3.4173 36 1 9.0915 -7.3312 2.3662 37 1 5.1315 -6.3167 3.1287 38 1 4.6096 -7.5664 1.9533 39 1 5.8042 -4.2484 2.0983 40 1 4.4325 -4.8183 1.1157 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577865178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:50 Heat of formation + Delta-G solvation = -44.511465 kcal Electronic energy + Delta-G solvation = -19526.942559 eV Core-core repulsion = 16660.605537 eV Total energy + Delta-G solvation = -2866.337022 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.37521 -36.72593 -34.62234 -33.49377 -31.51888 -30.86961 -28.66198 -27.38360 -25.37922 -24.18478 -23.25411 -21.42286 -20.32411 -18.92401 -17.05802 -16.84172 -16.65734 -16.04079 -15.42599 -15.13273 -14.48183 -14.30157 -14.12614 -14.08307 -13.62624 -13.25561 -13.21278 -12.71215 -12.17921 -12.11607 -12.02679 -11.81798 -11.60260 -11.42511 -11.24841 -11.14188 -10.75775 -10.66558 -10.26059 -9.97418 -9.87243 -9.75811 -9.57666 -9.28342 -8.58441 -8.12650 -7.86950 -6.08703 -4.07257 1.67210 2.07999 3.26611 3.34315 3.37212 3.51532 3.85873 4.32403 4.40730 4.49452 4.59102 4.81287 4.91761 5.02276 5.12622 5.18523 5.21090 5.25207 5.34445 5.42669 5.49705 5.54793 5.60872 5.67256 5.76509 5.81810 5.88992 5.98410 6.05299 6.34295 6.47657 6.76461 6.98273 7.06652 7.09660 7.20560 7.34793 7.74275 8.49103 8.95626 9.53556 11.04844 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.031194 B = 0.003937 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.387058 B = 7110.246155 C = 7285.592885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.069 0.931 9 C -0.009 4.009 10 C -0.138 4.138 11 C 0.050 3.950 12 N -0.535 5.535 13 C 0.011 3.989 14 C 0.061 3.939 15 O -0.368 6.368 16 C 0.122 3.878 17 C -0.143 4.143 18 C -0.064 4.064 19 S -0.295 6.295 20 C -0.054 4.054 21 C 0.028 3.972 22 H 0.263 0.737 23 H 0.011 0.989 24 H 0.015 0.985 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.117 0.883 39 H 0.085 0.915 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.269 -12.455 2.024 21.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.087 0.913 9 C -0.047 4.047 10 C -0.177 4.177 11 C -0.078 4.078 12 N -0.258 5.258 13 C -0.117 4.117 14 C -0.016 4.016 15 O -0.287 6.287 16 C 0.080 3.920 17 C -0.182 4.182 18 C -0.212 4.212 19 S -0.068 6.068 20 C -0.203 4.203 21 C -0.102 4.102 22 H 0.073 0.927 23 H 0.029 0.971 24 H 0.034 0.966 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.135 0.865 39 H 0.104 0.896 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.563 -13.666 2.490 22.393 hybrid contribution -0.559 2.366 -0.578 2.499 sum 17.005 -11.300 1.913 20.506 Atomic orbital electron populations 1.69917 1.06339 1.26926 1.51057 1.25051 0.94736 0.99222 0.94514 0.86759 0.80329 0.83565 0.78507 1.20294 1.21355 1.19020 1.21142 0.89558 0.94380 1.50940 0.91272 1.19487 0.97171 0.91912 0.96173 1.22070 0.93838 1.00591 1.01171 1.22387 0.95229 0.87598 1.02541 1.62531 1.58561 1.03000 1.01712 1.22813 1.00332 0.95221 0.93319 1.22710 0.98502 0.91802 0.88609 1.88166 1.77652 1.49699 1.13197 1.22254 0.92877 0.91605 0.85217 1.22556 0.94684 1.02883 0.98074 1.24119 0.99015 0.97697 1.00371 1.87967 1.05544 1.26030 1.87270 1.24212 0.98829 0.98934 0.98300 1.22930 0.99101 0.92841 0.95327 0.92709 0.97110 0.96650 0.92614 0.92728 0.90855 0.90853 0.92907 0.89689 0.88433 0.92296 0.89789 0.88629 0.89149 0.87846 0.87742 0.86508 0.89624 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.90 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.20 6.54 56.52 0.37 -5.84 16 7 C -0.52 -14.85 9.66 -34.44 -0.33 -15.18 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.22 4.04 -27.88 -0.11 -0.33 16 10 C -0.14 -2.60 4.44 -26.74 -0.12 -2.72 16 11 C 0.05 0.74 5.38 -3.83 -0.02 0.72 16 12 N -0.53 -6.93 4.33 -234.16 -1.01 -7.94 16 13 C 0.01 0.14 5.33 -3.72 -0.02 0.12 16 14 C 0.06 0.66 6.61 37.21 0.25 0.90 16 15 O -0.37 -4.71 10.12 -35.23 -0.36 -5.06 16 16 C 0.12 1.38 0.96 -89.85 -0.09 1.30 16 17 C -0.14 -1.40 5.02 -26.33 -0.13 -1.53 16 18 C -0.06 -0.56 7.46 37.77 0.28 -0.28 16 19 S -0.29 -3.35 23.26 -107.50 -2.50 -5.85 16 20 C -0.05 -0.59 6.59 37.94 0.25 -0.34 16 21 C 0.03 0.35 3.35 -3.58 -0.01 0.34 16 22 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 23 H 0.01 0.25 7.58 -51.93 -0.39 -0.15 16 24 H 0.02 0.36 7.19 -51.93 -0.37 -0.02 16 25 H 0.06 1.07 6.43 -51.93 -0.33 0.74 16 26 H 0.05 1.06 6.61 -51.93 -0.34 0.72 16 27 H 0.07 1.07 8.11 -51.93 -0.42 0.65 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.75 6.59 -51.93 -0.34 0.41 16 30 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 31 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.58 6.34 -51.93 -0.33 0.25 16 33 H 0.08 0.83 6.21 -51.93 -0.32 0.51 16 34 H 0.10 0.94 7.26 -51.93 -0.38 0.56 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.10 1.02 7.85 -51.92 -0.41 0.61 16 38 H 0.12 1.32 8.03 -51.93 -0.42 0.90 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.84 6.42 -51.93 -0.33 0.51 16 LS Contribution 313.96 15.07 4.73 4.73 Total: -1.00 -30.95 313.96 -9.71 -40.65 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.52 Total: -1.11 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -0.15 Total: -15.19 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: -0.24 Total: -35.07 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.36 Total: -5.06 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.90 kcal Atomic # 16 Polarization: -3.35 SS G_CDS: -2.50 Total: -5.85 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.95 -9.71 -40.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577865178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.857 kcal (2) G-P(sol) polarization free energy of solvation -30.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds