Wall clock time and date at job start Mon Mar 30 2020 05:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46988 * 180.02562 * 11 10 9 13 13 C 1.47001 * 111.00187 * 66.04168 * 12 11 10 14 14 C 1.53097 * 109.24110 * 177.61272 * 13 12 11 15 15 O 1.42966 * 109.28221 * 56.83134 * 14 13 12 16 16 C 1.43370 * 113.63790 * 301.03672 * 15 14 13 17 17 C 1.52574 * 109.35090 * 299.50730 * 16 15 14 18 18 C 1.54180 * 112.69658 * 239.88066 * 17 16 15 19 19 S 1.83941 * 102.58778 * 24.50299 * 18 17 16 20 20 C 1.54490 * 108.29753 * 176.81870 * 16 15 14 21 21 C 1.46978 * 111.00095 * 302.34976 * 12 11 10 22 22 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 26 26 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 27 27 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 28 28 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 29 29 H 1.08996 * 109.51482 * 297.54333 * 13 12 11 30 30 H 1.09002 * 109.51079 * 57.63590 * 13 12 11 31 31 H 1.09000 * 109.50184 * 176.77377 * 14 13 12 32 32 H 1.09002 * 109.50341 * 296.88461 * 14 13 12 33 33 H 1.08997 * 108.84440 * 0.73134 * 17 16 15 34 34 H 1.09000 * 108.84444 * 119.03350 * 17 16 15 35 35 H 1.08995 * 110.78928 * 266.22222 * 18 17 16 36 36 H 1.09002 * 110.78448 * 142.77201 * 18 17 16 37 37 H 1.09007 * 110.77901 * 214.44090 * 20 16 15 38 38 H 1.09003 * 110.77808 * 337.66855 * 20 16 15 39 39 H 1.08996 * 109.51712 * 302.58252 * 21 12 11 40 40 H 1.09004 * 109.51475 * 62.75183 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 6 5.5515 -2.6366 0.0178 12 7 6.0411 -4.0216 0.0220 13 6 5.6971 -4.7058 -1.2328 14 6 6.2764 -6.1227 -1.2100 15 8 5.7821 -6.8165 -0.0618 16 6 6.1075 -6.1779 1.1799 17 6 7.6243 -6.0979 1.3249 18 6 8.1423 -6.8375 2.5746 19 16 6.8175 -8.0749 2.8860 20 6 5.4503 -6.9803 2.3248 21 6 5.5191 -4.7613 1.1798 22 1 -0.4849 0.8400 0.0004 23 1 3.8786 -0.6821 -0.8838 24 1 3.8711 -0.6785 0.8962 25 1 3.6545 -3.1486 0.9003 26 1 3.6618 -3.1522 -0.8796 27 1 5.9188 -2.1245 -0.8715 28 1 5.9108 -2.1211 0.9084 29 1 4.6131 -4.7573 -1.3340 30 1 6.1154 -4.1542 -2.0747 31 1 5.9755 -6.6534 -2.1133 32 1 7.3641 -6.0705 -1.1633 33 1 8.0861 -6.5356 0.4399 34 1 7.9169 -5.0499 1.3893 35 1 8.2381 -6.1529 3.4173 36 1 9.0915 -7.3312 2.3662 37 1 5.1315 -6.3167 3.1287 38 1 4.6096 -7.5664 1.9533 39 1 5.8042 -4.2484 2.0983 40 1 4.4325 -4.8183 1.1157 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577865178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:49 Heat of formation + Delta-G solvation = -64.804029 kcal Electronic energy + Delta-G solvation = -19527.822511 eV Core-core repulsion = 16660.605537 eV Total energy + Delta-G solvation = -2867.216974 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.33930 -37.90743 -35.50286 -35.37518 -33.34063 -31.72052 -29.87726 -28.61936 -26.77131 -25.03156 -24.44625 -22.92915 -21.72183 -19.89125 -18.94357 -17.93635 -17.61335 -17.09463 -16.46624 -16.33147 -16.02317 -15.63554 -15.27184 -15.03722 -14.81065 -14.67995 -14.24731 -14.14701 -13.72697 -13.29323 -12.96488 -12.86355 -12.85701 -12.69122 -12.46285 -12.26749 -12.14139 -11.88321 -11.80151 -11.43087 -11.41580 -11.28701 -11.08383 -10.78939 -10.51043 -9.30653 -8.74796 -8.32261 -6.37560 0.84803 1.29063 1.35016 1.37240 1.49364 2.34454 2.62904 2.83945 3.03302 3.48487 3.60008 3.75968 3.98661 4.06112 4.08652 4.16025 4.23251 4.29647 4.35648 4.38265 4.50079 4.57357 4.60257 4.67813 4.78826 4.83186 4.88232 4.93573 4.96078 5.03475 5.07971 5.19313 5.45895 5.51260 5.63356 5.91817 5.95586 6.16829 6.25236 6.70794 7.27594 8.84964 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.031194 B = 0.003937 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.387058 B = 7110.246155 C = 7285.592885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.241 1.241 7 C -0.537 4.537 8 H 0.022 0.978 9 C -0.006 4.006 10 C -0.127 4.127 11 C 0.061 3.939 12 N -0.522 5.522 13 C 0.010 3.990 14 C 0.062 3.938 15 O -0.389 6.389 16 C 0.124 3.876 17 C -0.137 4.137 18 C -0.050 4.050 19 S -0.335 6.335 20 C -0.051 4.051 21 C 0.028 3.972 22 H 0.266 0.734 23 H 0.021 0.979 24 H 0.023 0.977 25 H 0.043 0.957 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.026 0.974 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.542 -11.426 2.055 23.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.164 1.164 7 C -0.575 4.575 8 H 0.040 0.960 9 C -0.044 4.044 10 C -0.166 4.166 11 C -0.067 4.067 12 N -0.245 5.245 13 C -0.119 4.119 14 C -0.015 4.015 15 O -0.308 6.308 16 C 0.083 3.917 17 C -0.175 4.175 18 C -0.197 4.197 19 S -0.108 6.108 20 C -0.200 4.200 21 C -0.102 4.102 22 H 0.075 0.925 23 H 0.039 0.961 24 H 0.042 0.958 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.044 0.956 30 H 0.118 0.882 31 H 0.130 0.870 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.139 0.861 37 H 0.132 0.868 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 20.858 -12.666 2.521 24.533 hybrid contribution -1.673 1.947 -0.600 2.636 sum 19.185 -10.719 1.921 22.060 Atomic orbital electron populations 1.70088 1.08542 1.28268 1.52617 1.26121 0.95655 1.03873 0.93919 0.85568 0.79576 0.77636 0.79306 1.19058 1.21089 1.16424 1.21530 0.92544 0.92753 1.50667 0.95973 1.19441 0.93482 0.94800 0.96725 1.21930 0.97124 0.97591 0.99999 1.22264 0.91665 0.89121 1.03659 1.62592 1.57578 1.02185 1.02108 1.22894 0.98891 0.96561 0.93521 1.22828 0.99309 0.90709 0.88608 1.88153 1.78234 1.50351 1.14087 1.22315 0.94076 0.90474 0.84860 1.22475 0.93068 1.03348 0.98647 1.24222 0.98321 0.96795 1.00400 1.88116 1.07351 1.27903 1.87428 1.24201 0.98404 0.98814 0.98558 1.22954 0.97596 0.93927 0.95672 0.92483 0.96055 0.95825 0.93816 0.94175 0.89714 0.89709 0.95595 0.88197 0.87036 0.90607 0.89548 0.88014 0.87637 0.86143 0.86808 0.87575 0.88496 0.95022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.59 13.96 21.45 0.30 -60.29 16 2 C 0.00 0.04 5.47 84.66 0.46 0.51 16 3 Si 0.96 43.77 27.47 68.60 1.88 45.66 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 7 C -0.54 -31.31 9.66 25.60 0.25 -31.07 16 8 H 0.02 1.44 7.99 -2.91 -0.02 1.42 16 9 C -0.01 -0.29 4.04 29.85 0.12 -0.17 16 10 C -0.13 -4.79 4.44 30.59 0.14 -4.65 16 11 C 0.06 1.68 5.38 86.30 0.46 2.14 16 12 N -0.52 -12.48 4.33 -894.75 -3.87 -16.36 16 13 C 0.01 0.22 5.33 86.32 0.46 0.68 16 14 C 0.06 1.23 6.61 72.01 0.48 1.71 16 15 O -0.39 -9.57 10.12 -148.98 -1.51 -11.08 16 16 C 0.12 2.66 0.96 -10.30 -0.01 2.65 16 17 C -0.14 -2.29 5.02 30.85 0.16 -2.13 16 18 C -0.05 -0.74 7.46 72.38 0.54 -0.20 16 19 S -0.33 -7.23 23.26 -56.49 -1.31 -8.55 16 20 C -0.05 -1.10 6.59 72.49 0.48 -0.62 16 21 C 0.03 0.68 3.35 86.42 0.29 0.97 16 22 H 0.27 15.71 8.31 -92.71 -0.77 14.93 16 23 H 0.02 0.93 7.58 -2.38 -0.02 0.91 16 24 H 0.02 1.04 7.19 -2.39 -0.02 1.02 16 25 H 0.04 1.72 6.43 -2.38 -0.02 1.71 16 26 H 0.04 1.60 6.61 -2.39 -0.02 1.58 16 27 H 0.08 2.20 8.11 -2.39 -0.02 2.18 16 28 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.03 0.75 6.59 -2.39 -0.02 0.73 16 30 H 0.10 2.02 8.12 -2.39 -0.02 2.00 16 31 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.08 1.27 6.34 -2.39 -0.02 1.26 16 33 H 0.09 1.44 6.21 -2.39 -0.01 1.42 16 34 H 0.10 1.63 7.26 -2.39 -0.02 1.61 16 35 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.11 2.16 7.85 -2.38 -0.02 2.14 16 38 H 0.11 2.47 8.03 -2.39 -0.02 2.45 16 39 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.03 0.93 6.42 -2.38 -0.02 0.92 16 Total: -1.00 -68.44 313.96 0.26 -68.18 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.95 Total: 12.64 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: 3.82 Total: -30.20 kcal Atomic # 7 Polarization: -73.08 SS G_CDS: -3.57 Total: -76.65 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -1.51 Total: -11.08 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.88 Total: 45.66 kcal Atomic # 16 Polarization: -7.23 SS G_CDS: -1.31 Total: -8.55 kcal Total: -68.44 0.26 -68.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577865178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.380 kcal (2) G-P(sol) polarization free energy of solvation -68.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds