Wall clock time and date at job start Mon Mar 30 2020 05:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86810 * 120.00183 * 2 1 4 4 H 1.48497 * 109.47059 * 239.99867 * 3 2 1 5 5 H 1.48504 * 109.46759 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47035 * 119.99962 * 3 2 1 7 7 C 1.37873 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00269 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99882 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47169 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46943 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.47019 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46842 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00417 * 0.02562 * 13 12 11 15 15 N 1.34783 * 119.99682 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99773 * 180.02562 * 15 13 12 17 17 C 1.50977 * 109.51240 * 85.10311 * 16 15 13 18 18 O 1.44222 * 113.00279 * 210.83397 * 17 16 15 19 19 C 1.43595 * 115.85898 * 318.66686 * 18 17 16 20 20 C 1.51009 * 111.51684 * 319.42652 * 19 18 17 21 21 O 1.43374 * 107.95472 * 92.73019 * 20 19 18 22 22 C 1.36958 * 117.69343 * 278.86219 * 21 20 19 23 23 H 0.97000 * 119.99954 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46949 * 59.99618 * 9 7 2 25 25 H 1.09007 * 109.46551 * 299.99943 * 9 7 2 26 26 H 1.08997 * 109.47630 * 59.99872 * 10 9 7 27 27 H 1.09007 * 109.46874 * 299.99813 * 10 9 7 28 28 H 1.09000 * 109.47535 * 59.99710 * 11 10 9 29 29 H 1.08998 * 109.47149 * 299.99393 * 11 10 9 30 30 H 1.09000 * 109.46969 * 59.99652 * 12 11 10 31 31 H 1.08998 * 109.46900 * 299.99833 * 12 11 10 32 32 H 0.97001 * 119.99976 * 0.02562 * 15 13 12 33 33 H 1.09002 * 109.51302 * 325.00067 * 16 15 13 34 34 H 1.09000 * 108.76441 * 331.83449 * 17 16 15 35 35 H 1.08993 * 108.76922 * 89.99610 * 17 16 15 36 36 H 1.08998 * 109.07391 * 198.90137 * 19 18 17 37 37 H 1.08998 * 109.02006 * 79.90938 * 19 18 17 38 38 H 1.09003 * 109.76696 * 333.11586 * 20 19 18 39 39 H 1.09001 * 109.76537 * 212.34377 * 20 19 18 40 40 H 1.09001 * 109.21890 * 300.51360 * 22 21 20 41 41 H 1.09001 * 109.18736 * 181.14838 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4803 -4.9870 0.0012 12 6 2.4746 -6.1500 0.0018 13 6 1.7210 -7.4551 0.0018 14 8 0.5082 -7.4551 0.0009 15 7 2.3950 -8.6223 0.0018 16 6 1.6624 -9.8910 0.0013 17 6 1.3056 -10.2667 -1.4168 18 8 0.0761 -11.0147 -1.5093 19 6 -0.1231 -12.0193 -0.5028 20 6 1.1541 -12.7694 -0.2086 21 8 1.8068 -12.1174 0.8888 22 6 2.5486 -10.9991 0.6148 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6241 -2.5566 0.8904 26 1 2.8713 -3.6039 0.8922 27 1 2.8726 -3.6046 -0.8878 28 1 0.8545 -5.0450 -0.8894 29 1 0.8527 -5.0447 0.8905 30 1 3.1006 -6.0923 0.8922 31 1 3.1018 -6.0922 -0.8877 32 1 3.3650 -8.6223 0.0022 33 1 0.7513 -9.7856 0.5902 34 1 1.2089 -9.3555 -2.0072 35 1 2.1132 -10.8680 -1.8341 36 1 -0.8789 -12.7247 -0.8482 37 1 -0.4739 -11.5412 0.4117 38 1 1.8017 -12.7527 -1.0853 39 1 0.9227 -13.8002 0.0599 40 1 3.3397 -11.2570 -0.0893 41 1 2.9959 -10.6308 1.5380 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590003635.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:57 Heat of formation + Delta-G solvation = -143.782599 kcal Electronic energy + Delta-G solvation = -20691.255184 eV Core-core repulsion = 17377.860571 eV Total energy + Delta-G solvation = -3313.394613 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.89605 -39.41542 -37.09126 -35.47991 -34.78428 -32.65281 -31.47102 -29.97021 -28.88645 -27.10777 -25.58941 -22.94207 -22.58505 -21.29898 -20.35883 -19.97132 -17.75426 -17.64893 -17.28193 -16.53123 -16.15370 -15.80996 -15.51556 -15.27587 -14.94242 -14.44328 -14.17464 -13.84836 -13.75505 -13.23082 -12.80354 -12.60804 -12.20580 -11.94519 -11.69567 -11.60413 -11.48409 -11.20176 -10.96477 -10.53524 -10.52790 -10.40751 -10.36836 -10.06897 -9.85372 -9.60523 -9.23197 -9.21410 -8.98315 -8.29271 -5.94024 -3.96758 2.63603 2.76780 3.17567 3.35964 3.40360 3.42513 3.57690 4.02578 4.32182 4.38862 4.49650 4.60456 4.63655 4.78609 4.88009 4.99895 5.08129 5.28182 5.30347 5.35350 5.39351 5.41210 5.47681 5.62435 5.84015 6.13343 6.15633 6.29877 6.54319 6.64448 6.84010 6.93998 7.02070 7.20168 7.31212 7.74873 7.91156 8.07266 8.17883 8.48792 9.10797 9.66800 11.17290 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.054602 B = 0.002567 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.682362 B =10906.887309 C =11176.989294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.137 4.137 13 C 0.512 3.488 14 O -0.526 6.526 15 N -0.729 5.729 16 C 0.070 3.930 17 C 0.048 3.952 18 O -0.380 6.380 19 C 0.021 3.979 20 C 0.027 3.973 21 O -0.374 6.374 22 C 0.067 3.933 23 H 0.261 0.739 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.402 0.598 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.051 0.949 36 H 0.102 0.898 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.111 0.889 40 H 0.049 0.951 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.212 -27.416 -0.530 28.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.177 4.177 13 C 0.299 3.701 14 O -0.400 6.400 15 N -0.385 5.385 16 C -0.036 4.036 17 C -0.029 4.029 18 O -0.298 6.298 19 C -0.055 4.055 20 C -0.049 4.049 21 O -0.291 6.291 22 C -0.012 4.012 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.236 0.764 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.069 0.931 36 H 0.120 0.880 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.129 0.871 40 H 0.067 0.933 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.985 -27.344 -0.498 27.995 hybrid contribution 1.145 1.007 -0.143 1.531 sum 7.130 -26.336 -0.641 27.292 Atomic orbital electron populations 1.69964 1.06053 1.26632 1.50826 1.25044 0.94841 0.99223 0.95459 0.86670 0.79572 0.83263 0.78535 1.20286 1.21319 1.20291 1.21246 0.92930 0.91216 1.50551 0.92815 1.19094 0.94060 0.91252 0.97329 1.21647 0.99074 0.93972 1.00061 1.21468 0.97027 0.92698 1.03035 1.21803 1.00107 0.91684 1.04112 1.21226 0.88574 0.85483 0.74767 1.90743 1.14175 1.87431 1.47639 1.45921 1.10136 1.04742 1.77747 1.22266 0.98471 0.85159 0.97725 1.22911 0.86899 0.96614 0.96492 1.88340 1.39879 1.50239 1.51360 1.23146 0.97863 0.91154 0.93358 1.23216 0.93824 0.97560 0.90301 1.86612 1.66773 1.40677 1.35012 1.22159 0.92126 0.84965 1.01904 0.92974 0.96581 0.96592 0.93461 0.93476 0.91763 0.91762 0.88983 0.89004 0.76368 0.87774 0.88489 0.93084 0.88040 0.91432 0.91444 0.87103 0.93321 0.87602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.29 55.43 0.74 -26.97 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.39 16 11 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 12 C -0.14 -1.75 5.70 -27.88 -0.16 -1.91 16 13 C 0.51 6.88 7.63 -10.98 -0.08 6.80 16 14 O -0.53 -9.58 15.65 5.56 0.09 -9.49 16 15 N -0.73 -6.74 5.00 -53.99 -0.27 -7.01 16 16 C 0.07 0.67 2.22 -68.12 -0.15 0.52 16 17 C 0.05 0.49 5.95 36.14 0.22 0.70 16 18 O -0.38 -4.38 10.93 -35.23 -0.38 -4.77 16 19 C 0.02 0.18 6.39 36.16 0.23 0.41 16 20 C 0.03 0.17 6.48 36.16 0.23 0.41 16 21 O -0.37 -3.07 10.01 -22.88 -0.23 -3.30 16 22 C 0.07 0.47 5.93 37.99 0.23 0.70 16 23 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 29 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.40 2.31 8.61 -40.82 -0.35 1.96 16 33 H 0.10 1.32 6.73 -51.93 -0.35 0.97 16 34 H 0.10 1.14 7.81 -51.93 -0.41 0.74 16 35 H 0.05 0.40 6.64 -51.93 -0.34 0.05 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.63 7.30 -51.93 -0.38 0.25 16 38 H 0.07 0.39 6.87 -51.93 -0.36 0.03 16 39 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.26 7.75 -51.93 -0.40 -0.15 16 41 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 332.47 15.07 5.01 5.01 Total: -1.00 -35.34 332.47 -7.14 -42.49 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -6.78 Total: -2.70 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -0.30 Total: -10.23 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.47 Total: -33.98 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.53 Total: -17.55 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.34 -7.14 -42.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590003635.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.294 kcal (2) G-P(sol) polarization free energy of solvation -35.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds