Wall clock time and date at job start Mon Mar 30 2020 05:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86810 * 120.00183 * 2 1 4 4 H 1.48497 * 109.47059 * 239.99867 * 3 2 1 5 5 H 1.48504 * 109.46759 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47035 * 119.99962 * 3 2 1 7 7 C 1.37873 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00269 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99882 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47169 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46943 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.47019 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46842 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00417 * 0.02562 * 13 12 11 15 15 N 1.34783 * 119.99682 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99773 * 180.02562 * 15 13 12 17 17 C 1.50977 * 109.51240 * 85.10311 * 16 15 13 18 18 O 1.44222 * 113.00279 * 210.83397 * 17 16 15 19 19 C 1.43595 * 115.85898 * 318.66686 * 18 17 16 20 20 C 1.51009 * 111.51684 * 319.42652 * 19 18 17 21 21 O 1.43374 * 107.95472 * 92.73019 * 20 19 18 22 22 C 1.36958 * 117.69343 * 278.86219 * 21 20 19 23 23 H 0.97000 * 119.99954 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46949 * 59.99618 * 9 7 2 25 25 H 1.09007 * 109.46551 * 299.99943 * 9 7 2 26 26 H 1.08997 * 109.47630 * 59.99872 * 10 9 7 27 27 H 1.09007 * 109.46874 * 299.99813 * 10 9 7 28 28 H 1.09000 * 109.47535 * 59.99710 * 11 10 9 29 29 H 1.08998 * 109.47149 * 299.99393 * 11 10 9 30 30 H 1.09000 * 109.46969 * 59.99652 * 12 11 10 31 31 H 1.08998 * 109.46900 * 299.99833 * 12 11 10 32 32 H 0.97001 * 119.99976 * 0.02562 * 15 13 12 33 33 H 1.09002 * 109.51302 * 325.00067 * 16 15 13 34 34 H 1.09000 * 108.76441 * 331.83449 * 17 16 15 35 35 H 1.08993 * 108.76922 * 89.99610 * 17 16 15 36 36 H 1.08998 * 109.07391 * 198.90137 * 19 18 17 37 37 H 1.08998 * 109.02006 * 79.90938 * 19 18 17 38 38 H 1.09003 * 109.76696 * 333.11586 * 20 19 18 39 39 H 1.09001 * 109.76537 * 212.34377 * 20 19 18 40 40 H 1.09001 * 109.21890 * 300.51360 * 22 21 20 41 41 H 1.09001 * 109.18736 * 181.14838 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4803 -4.9870 0.0012 12 6 2.4746 -6.1500 0.0018 13 6 1.7210 -7.4551 0.0018 14 8 0.5082 -7.4551 0.0009 15 7 2.3950 -8.6223 0.0018 16 6 1.6624 -9.8910 0.0013 17 6 1.3056 -10.2667 -1.4168 18 8 0.0761 -11.0147 -1.5093 19 6 -0.1231 -12.0193 -0.5028 20 6 1.1541 -12.7694 -0.2086 21 8 1.8068 -12.1174 0.8888 22 6 2.5486 -10.9991 0.6148 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6241 -2.5566 0.8904 26 1 2.8713 -3.6039 0.8922 27 1 2.8726 -3.6046 -0.8878 28 1 0.8545 -5.0450 -0.8894 29 1 0.8527 -5.0447 0.8905 30 1 3.1006 -6.0923 0.8922 31 1 3.1018 -6.0922 -0.8877 32 1 3.3650 -8.6223 0.0022 33 1 0.7513 -9.7856 0.5902 34 1 1.2089 -9.3555 -2.0072 35 1 2.1132 -10.8680 -1.8341 36 1 -0.8789 -12.7247 -0.8482 37 1 -0.4739 -11.5412 0.4117 38 1 1.8017 -12.7527 -1.0853 39 1 0.9227 -13.8002 0.0599 40 1 3.3397 -11.2570 -0.0893 41 1 2.9959 -10.6308 1.5380 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590003635.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:57 Heat of formation + Delta-G solvation = -170.502431 kcal Electronic energy + Delta-G solvation = -20692.413843 eV Core-core repulsion = 17377.860571 eV Total energy + Delta-G solvation = -3314.553271 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.64980 -40.38331 -37.80144 -36.76814 -36.14077 -34.61795 -32.41941 -31.29187 -29.91885 -27.77187 -27.34159 -24.40547 -23.37905 -22.32486 -21.69362 -21.31394 -18.49827 -18.48011 -18.33301 -18.07007 -17.26556 -16.87833 -16.55707 -16.36771 -16.08111 -15.64955 -15.48281 -14.85247 -14.57431 -14.52064 -14.15724 -13.64949 -13.60668 -13.46895 -13.27747 -12.78549 -12.53148 -12.37340 -12.16586 -12.14558 -12.12693 -11.81749 -11.37731 -11.36402 -11.20772 -11.09265 -10.82063 -10.70247 -10.54548 -10.08141 -8.18561 -6.31106 1.40314 1.44592 1.52431 1.58620 1.93840 2.42099 2.60937 2.88127 3.14041 3.38117 3.61992 3.79408 3.87724 3.99249 4.04763 4.14802 4.15364 4.24725 4.35994 4.44088 4.63633 4.68314 4.70593 4.82032 4.84110 4.84881 4.88456 4.90956 5.18866 5.29378 5.33535 5.40180 5.57095 5.78065 5.88100 5.97156 6.24975 6.37383 6.49442 6.87537 7.23075 7.38671 8.93615 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.054602 B = 0.002567 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.682362 B =10906.887309 C =11176.989294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.018 3.982 10 C -0.095 4.095 11 C -0.098 4.098 12 C -0.125 4.125 13 C 0.511 3.489 14 O -0.585 6.585 15 N -0.704 5.704 16 C 0.072 3.928 17 C 0.047 3.953 18 O -0.410 6.410 19 C 0.016 3.984 20 C 0.029 3.971 21 O -0.388 6.388 22 C 0.072 3.928 23 H 0.263 0.737 24 H -0.017 1.017 25 H -0.017 1.017 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.424 0.576 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.137 0.863 40 H 0.078 0.922 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.694 -28.587 -0.579 30.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.019 4.019 10 C -0.132 4.132 11 C -0.136 4.136 12 C -0.165 4.165 13 C 0.300 3.700 14 O -0.464 6.464 15 N -0.361 5.361 16 C -0.034 4.034 17 C -0.030 4.030 18 O -0.329 6.329 19 C -0.060 4.060 20 C -0.046 4.046 21 O -0.305 6.305 22 C -0.006 4.006 23 H 0.071 0.929 24 H 0.001 0.999 25 H 0.002 0.998 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.263 0.737 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.138 0.862 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.155 0.845 40 H 0.096 0.904 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.538 -28.558 -0.544 30.113 hybrid contribution -0.017 1.316 -0.133 1.323 sum 9.521 -27.241 -0.677 28.865 Atomic orbital electron populations 1.70132 1.08140 1.27833 1.51870 1.26118 0.95781 1.03831 0.94779 0.85423 0.78151 0.77600 0.79393 1.18832 1.21150 1.18834 1.21737 0.93784 0.92183 1.50296 0.91437 1.19065 0.94735 0.93931 0.94213 1.21440 0.97763 0.92559 1.01453 1.21265 0.97590 0.93892 1.00889 1.21678 0.98819 0.88849 1.07118 1.21358 0.87818 0.86807 0.74067 1.90735 1.16751 1.88244 1.50676 1.45626 1.11170 1.03608 1.75711 1.22282 0.97912 0.85975 0.97264 1.22938 0.87434 0.96249 0.96391 1.88286 1.40858 1.51305 1.52483 1.23327 0.99824 0.90817 0.91985 1.23343 0.92652 0.98164 0.90422 1.86604 1.67039 1.40772 1.36125 1.22237 0.91787 0.83615 1.02992 0.92857 0.99852 0.99845 0.91884 0.91914 0.94092 0.94054 0.85858 0.85887 0.73728 0.91570 0.90954 0.90021 0.86175 0.93457 0.90229 0.84529 0.90381 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.75 13.29 21.45 0.28 -59.46 16 2 C -0.01 -0.48 5.46 84.65 0.46 -0.01 16 3 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.54 -31.59 9.11 25.60 0.23 -31.35 16 8 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 9 C 0.02 0.98 4.97 29.85 0.15 1.13 16 10 C -0.09 -3.85 5.15 30.59 0.16 -3.69 16 11 C -0.10 -3.55 4.50 30.60 0.14 -3.41 16 12 C -0.13 -2.93 5.70 29.85 0.17 -2.76 16 13 C 0.51 13.50 7.63 87.66 0.67 14.17 16 14 O -0.58 -22.41 15.65 -3.03 -0.05 -22.46 16 15 N -0.70 -11.80 5.00 -443.10 -2.22 -14.01 16 16 C 0.07 1.33 2.22 44.87 0.10 1.43 16 17 C 0.05 0.92 5.95 71.32 0.42 1.35 16 18 O -0.41 -9.57 10.93 -148.98 -1.63 -11.20 16 19 C 0.02 0.27 6.39 71.33 0.46 0.72 16 20 C 0.03 0.31 6.48 71.33 0.46 0.77 16 21 O -0.39 -5.53 10.01 -104.78 -1.05 -6.58 16 22 C 0.07 0.82 5.93 72.52 0.43 1.25 16 23 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 24 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 25 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 26 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 28 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 29 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 30 H 0.12 2.18 8.14 -2.39 -0.02 2.17 16 31 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.42 3.35 8.61 -92.71 -0.80 2.56 16 33 H 0.07 1.77 6.73 -2.39 -0.02 1.75 16 34 H 0.07 1.74 7.81 -2.39 -0.02 1.72 16 35 H 0.08 1.06 6.64 -2.39 -0.02 1.05 16 36 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.05 0.94 7.30 -2.39 -0.02 0.92 16 38 H 0.08 0.67 6.87 -2.39 -0.02 0.65 16 39 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.08 0.47 7.75 -2.39 -0.02 0.46 16 41 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -81.73 332.47 1.44 -80.29 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 0.21 Total: 6.86 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: 3.85 Total: -20.42 kcal Atomic # 7 Polarization: -71.54 SS G_CDS: -1.93 Total: -73.47 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -2.72 Total: -40.23 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -81.73 1.44 -80.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590003635.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.213 kcal (2) G-P(sol) polarization free energy of solvation -81.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds