Wall clock time and date at job start Mon Mar 30 2020 05:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99797 * 2 1 4 4 C 1.53000 * 109.47093 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47234 * 64.99607 * 4 3 2 6 6 C 1.46496 * 120.00344 * 270.00378 * 5 4 3 7 7 C 1.50706 * 109.47048 * 269.99820 * 6 5 4 8 8 H 1.08001 * 119.99885 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00086 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00295 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99922 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47339 * 89.99445 * 11 9 7 13 13 H 1.48498 * 109.47163 * 209.99649 * 11 9 7 14 14 H 1.48497 * 109.47201 * 329.99674 * 11 9 7 15 15 C 1.34787 * 119.99801 * 90.00476 * 5 4 3 16 16 O 1.21277 * 119.99654 * 180.02562 * 15 5 4 17 17 C 1.50702 * 119.99680 * 359.97438 * 15 5 4 18 18 C 1.53778 * 113.61248 * 180.02562 * 17 15 5 19 19 C 1.53773 * 87.08429 * 220.01915 * 18 17 15 20 20 C 1.52997 * 113.61817 * 139.98076 * 19 18 17 21 21 O 1.42905 * 113.61485 * 270.80322 * 19 18 17 22 22 C 1.53775 * 113.61273 * 82.50465 * 17 15 5 23 23 H 1.09003 * 109.46825 * 299.99772 * 1 2 3 24 24 H 1.08997 * 109.47402 * 59.99759 * 1 2 3 25 25 H 1.09005 * 109.47475 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47181 * 60.00449 * 3 2 1 27 27 H 1.09007 * 109.47177 * 300.00123 * 3 2 1 28 28 H 1.09002 * 109.47010 * 305.00098 * 4 3 2 29 29 H 1.08998 * 109.47474 * 184.99766 * 4 3 2 30 30 H 1.08993 * 109.47227 * 29.99707 * 6 5 4 31 31 H 1.08999 * 109.46946 * 150.00090 * 6 5 4 32 32 H 0.97005 * 120.00273 * 180.02562 * 10 9 7 33 33 H 1.08998 * 112.90624 * 311.24891 * 17 15 5 34 34 H 1.09001 * 113.61374 * 105.46299 * 18 17 15 35 35 H 1.09003 * 113.61173 * 334.57122 * 18 17 15 36 36 H 1.09002 * 109.47153 * 59.99965 * 20 19 18 37 37 H 1.09001 * 109.46832 * 300.00156 * 20 19 18 38 38 H 1.09004 * 109.47261 * 180.02562 * 20 19 18 39 39 H 0.96698 * 113.99781 * 178.46731 * 21 19 18 40 40 H 1.08995 * 113.61753 * 25.43408 * 22 17 15 41 41 H 1.08997 * 113.61771 * 254.52216 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.1051 -0.8921 -1.3427 7 6 5.5010 -1.2978 -0.9449 8 1 6.2195 -0.5459 -0.6537 9 6 5.8603 -2.6288 -0.9517 10 7 7.0785 -2.9829 -0.6050 11 14 4.6172 -3.9293 -1.4547 12 1 4.7024 -4.1551 -2.9199 13 1 4.9112 -5.1976 -0.7405 14 1 3.2497 -3.4690 -1.1036 15 6 4.2615 1.3338 -2.3218 16 8 4.6255 0.8202 -3.3585 17 6 4.1277 2.8320 -2.2293 18 6 4.4897 3.5643 -3.5322 19 6 5.1756 4.6238 -2.6537 20 6 6.4989 5.1332 -3.2283 21 8 4.3043 5.6805 -2.2458 22 6 5.3471 3.5213 -1.5948 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8514 0.5682 0.8409 29 1 3.9785 2.1765 0.0889 30 1 3.3852 -1.3629 -0.6734 31 1 3.9120 -1.2113 -2.3668 32 1 7.3314 -3.9194 -0.6101 33 1 3.1761 3.1473 -1.8015 34 1 3.6238 3.9419 -4.0759 35 1 5.1807 3.0098 -4.1672 36 1 6.3212 5.5853 -4.2041 37 1 7.1934 4.3000 -3.3350 38 1 6.9250 5.8771 -2.5550 39 1 4.7240 6.3376 -1.6739 40 1 6.2725 2.9551 -1.7000 41 1 5.1731 3.8643 -0.5750 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590629498.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:31 Heat of formation + Delta-G solvation = -106.069024 kcal Electronic energy + Delta-G solvation = -22117.582491 eV Core-core repulsion = 18805.823262 eV Total energy + Delta-G solvation = -3311.759229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.34880 -38.36708 -37.45865 -34.92847 -34.51214 -32.51804 -30.02809 -29.58197 -27.71684 -26.04354 -25.72846 -24.36077 -22.64593 -21.64932 -19.75904 -18.27772 -16.95626 -16.84929 -16.38236 -16.10118 -15.64286 -15.34309 -15.24766 -14.77342 -14.25044 -14.07025 -13.70832 -13.30774 -12.95846 -12.74604 -12.54569 -12.23587 -12.03793 -11.88262 -11.70100 -11.66712 -11.49862 -11.27037 -10.95220 -10.90079 -10.78849 -10.35341 -10.20934 -10.03429 -9.83183 -9.51600 -9.44266 -8.82458 -8.49386 -7.62138 -6.00569 -3.97751 3.34880 3.37424 3.43050 3.48070 3.85096 3.97124 4.01085 4.44668 4.49306 4.64649 4.85254 4.87110 5.16266 5.21939 5.32548 5.35330 5.41944 5.47253 5.49206 5.53414 5.58274 5.62452 5.67278 5.75701 5.83264 5.90421 5.98453 6.06145 6.21414 6.25741 6.40784 6.98700 7.11441 7.33220 7.45530 7.54732 7.73413 8.36861 8.56034 9.00406 9.07089 9.61311 11.12910 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.015905 B = 0.006463 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.033531 B = 4331.396003 C = 5530.981817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.043 3.957 4 C 0.113 3.887 5 N -0.583 5.583 6 C 0.218 3.782 7 C -0.525 4.525 8 H 0.072 0.928 9 C 0.071 3.929 10 N -0.902 5.902 11 Si 0.874 3.126 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.262 1.262 15 C 0.515 3.485 16 O -0.541 6.541 17 C -0.131 4.131 18 C -0.101 4.101 19 C 0.101 3.899 20 C -0.168 4.168 21 O -0.545 6.545 22 C -0.145 4.145 23 H 0.037 0.963 24 H 0.036 0.964 25 H 0.083 0.917 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.031 0.969 32 H 0.263 0.737 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.376 0.624 40 H 0.097 0.903 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.947 16.198 1.238 18.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C -0.035 4.035 4 C -0.012 4.012 5 N -0.313 5.313 6 C 0.097 3.903 7 C -0.563 4.563 8 H 0.090 0.910 9 C -0.130 4.130 10 N -0.541 5.541 11 Si 0.701 3.299 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.186 1.186 15 C 0.301 3.699 16 O -0.418 6.418 17 C -0.152 4.152 18 C -0.139 4.139 19 C 0.060 3.940 20 C -0.225 4.225 21 O -0.350 6.350 22 C -0.183 4.183 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.101 0.899 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.124 0.876 34 H 0.094 0.906 35 H 0.127 0.873 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.223 0.777 40 H 0.115 0.885 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.951 15.221 0.354 17.661 hybrid contribution -0.397 -0.244 0.297 0.553 sum -9.348 14.976 0.651 17.667 Atomic orbital electron populations 1.22707 0.81973 1.02522 0.99329 1.88059 1.18828 1.27304 1.95195 1.23155 0.95378 0.85234 0.99732 1.21535 0.90994 0.99350 0.89285 1.47813 1.64472 1.08757 1.10261 1.19676 0.97601 0.75190 0.97787 1.21371 0.96176 0.93481 1.45284 0.90955 1.24825 0.95154 0.98353 0.94685 1.69901 1.18179 1.17170 1.48814 0.86871 0.82577 0.81313 0.79182 1.20095 1.21238 1.18639 1.20217 0.77734 0.88117 0.83807 1.90644 1.46786 1.74778 1.29610 1.22662 1.00185 0.92762 0.99638 1.22948 1.01407 0.93818 0.95725 1.22215 0.89914 0.86418 0.95470 1.22277 0.96652 1.02093 1.01479 1.86497 1.39967 1.37820 1.70730 1.23617 0.98549 0.97246 0.98923 0.94490 0.94507 0.89882 0.92870 0.93573 0.88899 0.89676 0.94005 0.95071 0.92729 0.87561 0.90648 0.87336 0.91786 0.90841 0.92348 0.77677 0.88471 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -6.25 9.53 -35.23 -0.34 -6.59 16 3 C 0.04 0.60 6.19 37.16 0.23 0.83 16 4 C 0.11 1.84 5.51 -4.04 -0.02 1.82 16 5 N -0.58 -12.36 2.42 -175.06 -0.42 -12.78 16 6 C 0.22 5.59 4.05 -5.19 -0.02 5.57 16 7 C -0.52 -15.45 9.94 -34.44 -0.34 -15.79 16 8 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 9 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 10 N -0.90 -28.35 13.96 55.43 0.77 -27.58 16 11 Si 0.87 22.44 27.47 -169.99 -4.67 17.77 16 12 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 15 C 0.51 10.70 7.20 -10.98 -0.08 10.62 16 16 O -0.54 -13.56 15.48 5.56 0.09 -13.47 16 17 C -0.13 -2.00 2.72 -90.96 -0.25 -2.25 16 18 C -0.10 -1.45 6.80 -25.92 -0.18 -1.62 16 19 C 0.10 1.17 1.81 -89.79 -0.16 1.01 16 20 C -0.17 -1.67 9.45 37.16 0.35 -1.32 16 21 O -0.54 -5.79 13.41 -35.23 -0.47 -6.27 16 22 C -0.15 -1.90 6.30 -25.90 -0.16 -2.06 16 23 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.62 7.34 -51.93 -0.38 0.24 16 28 H 0.09 1.62 8.07 -51.93 -0.42 1.20 16 29 H 0.09 1.14 5.78 -51.93 -0.30 0.84 16 30 H 0.04 1.07 6.17 -51.93 -0.32 0.75 16 31 H 0.03 0.86 6.85 -51.93 -0.36 0.51 16 32 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 33 H 0.11 1.45 6.96 -51.93 -0.36 1.09 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.11 1.71 7.39 -51.93 -0.38 1.33 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.79 7.94 -51.93 -0.41 0.37 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.38 2.39 9.06 45.56 0.41 2.80 16 40 H 0.10 1.44 7.92 -51.93 -0.41 1.03 16 41 H 0.08 0.85 7.68 -51.93 -0.40 0.45 16 LS Contribution 333.98 15.07 5.03 5.03 Total: -1.00 -36.23 333.98 -5.51 -41.73 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.88 Total: 1.80 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 0.38 Total: 0.35 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.35 Total: -40.36 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.72 Total: -26.33 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.67 Total: 17.77 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.23 -5.51 -41.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590629498.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.337 kcal (2) G-P(sol) polarization free energy of solvation -36.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds