Wall clock time and date at job start Mon Mar 30 2020 05:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99797 * 2 1 4 4 C 1.53000 * 109.47093 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47234 * 64.99607 * 4 3 2 6 6 C 1.46496 * 120.00344 * 270.00378 * 5 4 3 7 7 C 1.50706 * 109.47048 * 269.99820 * 6 5 4 8 8 H 1.08001 * 119.99885 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00086 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00295 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99922 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47339 * 89.99445 * 11 9 7 13 13 H 1.48498 * 109.47163 * 209.99649 * 11 9 7 14 14 H 1.48497 * 109.47201 * 329.99674 * 11 9 7 15 15 C 1.34787 * 119.99801 * 90.00476 * 5 4 3 16 16 O 1.21277 * 119.99654 * 180.02562 * 15 5 4 17 17 C 1.50702 * 119.99680 * 359.97438 * 15 5 4 18 18 C 1.53778 * 113.61248 * 180.02562 * 17 15 5 19 19 C 1.53773 * 87.08429 * 220.01915 * 18 17 15 20 20 C 1.52997 * 113.61817 * 139.98076 * 19 18 17 21 21 O 1.42905 * 113.61485 * 270.80322 * 19 18 17 22 22 C 1.53775 * 113.61273 * 82.50465 * 17 15 5 23 23 H 1.09003 * 109.46825 * 299.99772 * 1 2 3 24 24 H 1.08997 * 109.47402 * 59.99759 * 1 2 3 25 25 H 1.09005 * 109.47475 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47181 * 60.00449 * 3 2 1 27 27 H 1.09007 * 109.47177 * 300.00123 * 3 2 1 28 28 H 1.09002 * 109.47010 * 305.00098 * 4 3 2 29 29 H 1.08998 * 109.47474 * 184.99766 * 4 3 2 30 30 H 1.08993 * 109.47227 * 29.99707 * 6 5 4 31 31 H 1.08999 * 109.46946 * 150.00090 * 6 5 4 32 32 H 0.97005 * 120.00273 * 180.02562 * 10 9 7 33 33 H 1.08998 * 112.90624 * 311.24891 * 17 15 5 34 34 H 1.09001 * 113.61374 * 105.46299 * 18 17 15 35 35 H 1.09003 * 113.61173 * 334.57122 * 18 17 15 36 36 H 1.09002 * 109.47153 * 59.99965 * 20 19 18 37 37 H 1.09001 * 109.46832 * 300.00156 * 20 19 18 38 38 H 1.09004 * 109.47261 * 180.02562 * 20 19 18 39 39 H 0.96698 * 113.99781 * 178.46731 * 21 19 18 40 40 H 1.08995 * 113.61753 * 25.43408 * 22 17 15 41 41 H 1.08997 * 113.61771 * 254.52216 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.1051 -0.8921 -1.3427 7 6 5.5010 -1.2978 -0.9449 8 1 6.2195 -0.5459 -0.6537 9 6 5.8603 -2.6288 -0.9517 10 7 7.0785 -2.9829 -0.6050 11 14 4.6172 -3.9293 -1.4547 12 1 4.7024 -4.1551 -2.9199 13 1 4.9112 -5.1976 -0.7405 14 1 3.2497 -3.4690 -1.1036 15 6 4.2615 1.3338 -2.3218 16 8 4.6255 0.8202 -3.3585 17 6 4.1277 2.8320 -2.2293 18 6 4.4897 3.5643 -3.5322 19 6 5.1756 4.6238 -2.6537 20 6 6.4989 5.1332 -3.2283 21 8 4.3043 5.6805 -2.2458 22 6 5.3471 3.5213 -1.5948 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8514 0.5682 0.8409 29 1 3.9785 2.1765 0.0889 30 1 3.3852 -1.3629 -0.6734 31 1 3.9120 -1.2113 -2.3668 32 1 7.3314 -3.9194 -0.6101 33 1 3.1761 3.1473 -1.8015 34 1 3.6238 3.9419 -4.0759 35 1 5.1807 3.0098 -4.1672 36 1 6.3212 5.5853 -4.2041 37 1 7.1934 4.3000 -3.3350 38 1 6.9250 5.8771 -2.5550 39 1 4.7240 6.3376 -1.6739 40 1 6.2725 2.9551 -1.7000 41 1 5.1731 3.8643 -0.5750 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590629498.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:31 Heat of formation + Delta-G solvation = -134.739447 kcal Electronic energy + Delta-G solvation = -22118.825734 eV Core-core repulsion = 18805.823262 eV Total energy + Delta-G solvation = -3313.002472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.64206 -39.64917 -38.70300 -36.57742 -35.54678 -34.70712 -31.57453 -30.62132 -29.41032 -27.11003 -26.82859 -25.88583 -24.07350 -23.27833 -20.80647 -19.80047 -19.09701 -18.27124 -17.46866 -17.28150 -16.93976 -16.80234 -16.35591 -16.14324 -15.84444 -15.44914 -15.00065 -14.68679 -14.45937 -14.13322 -13.83932 -13.79963 -13.31458 -13.21813 -13.04165 -12.84714 -12.78199 -12.60558 -12.49284 -12.36375 -12.08253 -11.95494 -11.92671 -11.73297 -11.25204 -10.87001 -10.82357 -10.57446 -10.38101 -9.39240 -8.34204 -6.37319 1.30841 1.33481 1.44668 1.76719 2.29825 2.31658 2.93381 3.01332 3.10808 3.39655 3.53816 3.69272 3.81872 4.04554 4.16013 4.30445 4.36876 4.42527 4.51862 4.54278 4.60849 4.62953 4.74547 4.76551 4.83793 4.85735 4.91923 4.97787 4.98906 5.01983 5.12382 5.28570 5.36713 5.47626 5.66113 6.24841 6.31162 6.62687 6.75164 6.93366 7.22769 7.43315 8.82562 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.015905 B = 0.006463 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.033531 B = 4331.396003 C = 5530.981817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.418 6.418 3 C 0.047 3.953 4 C 0.106 3.894 5 N -0.590 5.590 6 C 0.233 3.767 7 C -0.532 4.532 8 H 0.032 0.968 9 C 0.014 3.986 10 N -0.944 5.944 11 Si 0.942 3.058 12 H -0.277 1.277 13 H -0.272 1.272 14 H -0.245 1.245 15 C 0.505 3.495 16 O -0.597 6.597 17 C -0.124 4.124 18 C -0.112 4.112 19 C 0.124 3.876 20 C -0.166 4.166 21 O -0.548 6.548 22 C -0.143 4.143 23 H 0.062 0.938 24 H 0.044 0.956 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.118 0.882 30 H 0.048 0.952 31 H 0.007 0.993 32 H 0.268 0.732 33 H 0.134 0.866 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.084 0.916 39 H 0.398 0.602 40 H 0.071 0.929 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.063 18.231 2.218 21.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.337 6.337 3 C -0.030 4.030 4 C -0.017 4.017 5 N -0.320 5.320 6 C 0.111 3.889 7 C -0.570 4.570 8 H 0.050 0.950 9 C -0.184 4.184 10 N -0.584 5.584 11 Si 0.765 3.235 12 H -0.202 1.202 13 H -0.197 1.197 14 H -0.168 1.168 15 C 0.294 3.706 16 O -0.478 6.478 17 C -0.145 4.145 18 C -0.150 4.150 19 C 0.083 3.917 20 C -0.224 4.224 21 O -0.357 6.357 22 C -0.181 4.181 23 H 0.080 0.920 24 H 0.063 0.937 25 H 0.102 0.898 26 H 0.111 0.889 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.135 0.865 30 H 0.066 0.934 31 H 0.025 0.975 32 H 0.077 0.923 33 H 0.151 0.849 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.249 0.751 40 H 0.090 0.910 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.087 17.310 1.385 20.603 hybrid contribution 0.305 -0.803 0.023 0.859 sum -10.782 16.507 1.409 19.767 Atomic orbital electron populations 1.22878 0.79884 1.03245 1.00898 1.87988 1.21269 1.28922 1.95561 1.23166 0.93049 0.84867 1.01952 1.21867 0.93396 1.00134 0.86272 1.47899 1.64514 1.07161 1.12382 1.19209 0.95118 0.78578 0.96014 1.21586 0.97391 0.92956 1.45088 0.94959 1.25752 0.97249 1.00860 0.94559 1.70034 1.20281 1.18055 1.50056 0.85794 0.80578 0.78537 0.78592 1.20227 1.19653 1.16846 1.21272 0.76147 0.90469 0.82698 1.90605 1.49170 1.76304 1.31720 1.22753 1.02394 0.88153 1.01212 1.22955 1.01580 0.94852 0.95566 1.21828 0.90157 0.86150 0.93561 1.22258 0.95501 1.02215 1.02409 1.86456 1.40015 1.37843 1.71357 1.23617 0.96240 0.97212 1.01058 0.91992 0.93746 0.89765 0.88897 0.92778 0.90545 0.86450 0.93422 0.97496 0.92310 0.84864 0.89959 0.89782 0.91229 0.92344 0.89700 0.75079 0.91003 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.42 -13.12 9.53 -148.98 -1.42 -14.54 16 3 C 0.05 1.18 6.19 71.98 0.45 1.63 16 4 C 0.11 3.31 5.51 86.38 0.48 3.78 16 5 N -0.59 -25.29 2.42 -826.15 -2.00 -27.29 16 6 C 0.23 12.26 4.05 85.64 0.35 12.61 16 7 C -0.53 -32.59 9.94 25.60 0.25 -32.34 16 8 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 9 C 0.01 0.84 5.47 84.65 0.46 1.30 16 10 N -0.94 -61.10 13.96 21.44 0.30 -60.80 16 11 Si 0.94 47.06 27.47 68.60 1.88 48.94 16 12 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 13 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 14 H -0.25 -11.47 6.54 99.48 0.65 -10.82 16 15 C 0.50 21.38 7.20 87.66 0.63 22.01 16 16 O -0.60 -31.39 15.48 -3.02 -0.05 -31.44 16 17 C -0.12 -3.63 2.72 -11.02 -0.03 -3.66 16 18 C -0.11 -3.11 6.80 31.12 0.21 -2.90 16 19 C 0.12 2.60 1.81 -10.26 -0.02 2.58 16 20 C -0.17 -2.98 9.45 71.98 0.68 -2.30 16 21 O -0.55 -9.37 13.41 -148.98 -2.00 -11.37 16 22 C -0.14 -3.49 6.30 31.13 0.20 -3.30 16 23 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.05 1.28 7.34 -2.38 -0.02 1.26 16 28 H 0.08 2.63 8.07 -2.39 -0.02 2.62 16 29 H 0.12 2.82 5.78 -2.39 -0.01 2.81 16 30 H 0.05 2.44 6.17 -2.39 -0.01 2.43 16 31 H 0.01 0.40 6.85 -2.39 -0.02 0.38 16 32 H 0.27 16.11 8.31 -92.70 -0.77 15.34 16 33 H 0.13 3.19 6.96 -2.39 -0.02 3.18 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.08 2.76 7.39 -2.39 -0.02 2.75 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.06 1.23 7.94 -2.39 -0.02 1.21 16 38 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.40 3.11 9.06 -74.06 -0.67 2.44 16 40 H 0.07 2.15 7.92 -2.39 -0.02 2.13 16 41 H 0.11 1.95 7.68 -2.39 -0.02 1.93 16 Total: -1.00 -83.00 333.98 1.92 -81.09 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.29 Total: 14.15 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 4.90 Total: 1.26 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -1.70 Total: -88.09 kcal Atomic # 8 Polarization: -53.88 SS G_CDS: -3.46 Total: -57.34 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.88 Total: 48.94 kcal Total: -83.00 1.92 -81.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590629498.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.652 kcal (2) G-P(sol) polarization free energy of solvation -83.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds