Wall clock time and date at job start Mon Mar 30 2020 05:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99955 * 2 1 4 4 H 1.48494 * 109.46868 * 239.99734 * 3 2 1 5 5 H 1.48501 * 109.46957 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47379 * 119.99450 * 3 2 1 7 7 C 1.37874 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00221 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00081 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.88611 * 303.87614 * 9 7 2 11 11 C 1.55152 * 111.03812 * 67.78185 * 9 7 2 12 12 C 1.54322 * 102.94239 * 153.59436 * 11 9 7 13 13 N 1.47288 * 107.30557 * 337.81331 * 12 11 9 14 14 C 1.34776 * 125.79586 * 178.92372 * 13 12 11 15 15 O 1.21278 * 120.00155 * 174.80769 * 14 13 12 16 16 C 1.50707 * 119.99643 * 354.81384 * 14 13 12 17 17 C 1.53001 * 115.54887 * 293.12388 * 16 14 13 18 18 C 1.52998 * 109.47002 * 304.10523 * 17 16 14 19 19 F 1.39904 * 109.46913 * 184.49244 * 18 17 16 20 20 C 1.52995 * 117.49785 * 147.45706 * 16 14 13 21 21 C 1.52993 * 117.50005 * 78.79471 * 16 14 13 22 22 C 1.47428 * 108.55842 * 358.93015 * 13 12 11 23 23 H 0.96995 * 120.00151 * 0.02562 * 1 2 3 24 24 H 0.96706 * 113.99734 * 56.11556 * 10 9 7 25 25 H 1.09006 * 110.71924 * 271.95535 * 11 9 7 26 26 H 1.08999 * 110.72253 * 35.04928 * 11 9 7 27 27 H 1.08997 * 109.88612 * 97.22532 * 12 11 9 28 28 H 1.09001 * 109.88178 * 218.23908 * 12 11 9 29 29 H 1.09000 * 109.47063 * 64.10248 * 17 16 14 30 30 H 1.08997 * 109.47378 * 184.10421 * 17 16 14 31 31 H 1.08993 * 109.47248 * 304.49374 * 18 17 16 32 32 H 1.09003 * 109.47501 * 64.49917 * 18 17 16 33 33 H 1.09004 * 117.50070 * 0.02562 * 20 16 14 34 34 H 1.09009 * 117.50138 * 145.01589 * 20 16 14 35 35 H 1.08998 * 117.50328 * 214.97487 * 21 16 14 36 36 H 1.09001 * 117.49844 * 359.97438 * 21 16 14 37 37 H 1.09002 * 110.36589 * 265.25834 * 22 13 12 38 38 H 1.09000 * 110.36673 * 143.04213 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.3514 -2.5681 1.1087 11 6 0.4989 -2.7081 -1.3403 12 6 0.3973 -4.2445 -1.4439 13 7 1.4603 -4.8119 -0.5969 14 6 1.6953 -6.1244 -0.4003 15 8 2.6592 -6.4779 0.2452 16 6 0.7601 -7.1528 -0.9827 17 6 -0.6502 -7.1730 -0.3898 18 6 -0.5636 -7.3631 1.1259 19 9 -1.8530 -7.4842 1.6551 20 6 1.3629 -8.4901 -1.4173 21 6 0.9056 -7.4778 -2.4706 22 6 2.2259 -3.7030 0.0012 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2781 -1.8352 1.1503 25 1 -0.4930 -2.2578 -1.3002 26 1 1.0728 -2.2998 -2.1722 27 1 -0.5775 -4.5765 -1.0868 28 1 0.5388 -4.5564 -2.4787 29 1 -1.1504 -6.2298 -0.6097 30 1 -1.2165 -7.9952 -0.8272 31 1 0.0061 -8.2656 1.3469 32 1 -0.0671 -6.5015 1.5724 33 1 2.4359 -8.6263 -1.2817 34 1 0.7547 -9.3844 -1.2813 35 1 -0.0032 -7.7065 -3.0271 36 1 1.6775 -6.9475 -3.0284 37 1 3.1050 -3.4796 -0.6033 38 1 2.5206 -3.9520 1.0206 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592853184.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:18 Heat of formation + Delta-G solvation = -117.660352 kcal Electronic energy + Delta-G solvation = -21938.563664 eV Core-core repulsion = 18502.841492 eV Total energy + Delta-G solvation = -3435.722172 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -47.48696 -40.05999 -37.79004 -36.41241 -34.32838 -32.17804 -31.28534 -29.85500 -28.39062 -25.63394 -23.92718 -23.15677 -22.42086 -21.24107 -19.69101 -18.42713 -17.25346 -16.68508 -16.18151 -15.88942 -15.33334 -15.03042 -14.87817 -14.82722 -14.46144 -14.12903 -13.33867 -13.22182 -12.86619 -12.70790 -12.11374 -11.95048 -11.73052 -11.63679 -11.51742 -11.37569 -11.33559 -10.90248 -10.80523 -10.63109 -10.53812 -10.46666 -10.13332 -9.96930 -9.50174 -9.34957 -8.71628 -8.26106 -8.04113 -6.33777 -4.41765 2.88002 3.18899 3.24209 3.26406 3.35554 3.68283 4.22901 4.34267 4.65647 4.71482 4.77226 4.94196 4.99051 5.13146 5.26567 5.37262 5.51040 5.51930 5.68335 5.72260 5.76066 5.85976 5.88424 5.99037 6.04126 6.09154 6.30084 6.37998 6.59740 6.83729 6.91327 7.25560 7.27796 7.69453 7.94085 8.07151 8.54994 8.61003 9.27330 9.43391 10.73944 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.026851 B = 0.005310 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.552712 B = 5271.485410 C = 5673.439370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.250 3.750 10 O -0.584 6.584 11 C -0.140 4.140 12 C 0.101 3.899 13 N -0.600 5.600 14 C 0.557 3.443 15 O -0.551 6.551 16 C -0.152 4.152 17 C -0.108 4.108 18 C 0.062 3.938 19 F -0.219 7.219 20 C -0.146 4.146 21 C -0.155 4.155 22 C 0.119 3.881 23 H 0.270 0.730 24 H 0.386 0.614 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.352 -11.326 -5.176 12.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.129 4.129 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.209 3.791 10 O -0.395 6.395 11 C -0.179 4.179 12 C -0.021 4.021 13 N -0.331 5.331 14 C 0.344 3.656 15 O -0.430 6.430 16 C -0.155 4.155 17 C -0.145 4.145 18 C 0.007 3.993 19 F -0.201 7.201 20 C -0.183 4.183 21 C -0.192 4.192 22 C -0.003 4.003 23 H 0.080 0.920 24 H 0.238 0.762 25 H 0.102 0.898 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.685 -11.994 -4.686 12.986 hybrid contribution -0.030 1.542 -0.236 1.560 sum -1.715 -10.452 -4.922 11.680 Atomic orbital electron populations 1.69545 1.06005 1.27932 1.50259 1.24984 0.95019 0.99572 0.93369 0.86448 0.79527 0.81958 0.78896 1.20043 1.21072 1.19961 1.21437 0.93749 0.90202 1.52107 0.91700 1.19563 0.86014 0.90716 0.82780 1.86093 1.51000 1.52824 1.49558 1.23214 1.03113 0.90121 1.01457 1.22255 0.90124 0.96845 0.92917 1.48593 1.32963 1.04686 1.46846 1.18991 0.84821 0.81472 0.80337 1.90665 1.30191 1.80164 1.41981 1.21273 0.96462 0.98497 0.99278 1.21660 0.93619 1.04350 0.94916 1.21944 0.79957 1.03853 0.93496 1.92748 1.41684 1.97699 1.87935 1.23041 1.02199 0.91743 1.01348 1.23050 1.03699 1.02618 0.89819 1.22415 0.94593 0.85289 0.97966 0.91962 0.76168 0.89843 0.91349 0.92215 0.92748 0.89464 0.89944 0.90589 0.90372 0.87778 0.87984 0.87820 0.88261 0.91092 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.71 10.79 55.43 0.60 -22.11 16 2 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 3 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 4 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.54 -13.68 8.25 -34.44 -0.28 -13.96 16 8 H 0.06 1.64 7.77 -52.48 -0.41 1.24 16 9 C 0.25 5.89 0.89 -89.63 -0.08 5.81 16 10 O -0.58 -14.70 13.18 -35.23 -0.46 -15.16 16 11 C -0.14 -2.91 5.64 -24.90 -0.14 -3.06 16 12 C 0.10 1.77 6.40 -2.92 -0.02 1.75 16 13 N -0.60 -11.52 3.34 -170.30 -0.57 -12.09 16 14 C 0.56 10.18 6.17 -10.98 -0.07 10.11 16 15 O -0.55 -11.80 17.03 5.56 0.09 -11.71 16 16 C -0.15 -2.07 1.30 -155.66 -0.20 -2.27 16 17 C -0.11 -1.36 5.50 -26.73 -0.15 -1.51 16 18 C 0.06 0.88 7.23 37.16 0.27 1.15 16 19 F -0.22 -3.36 17.36 2.25 0.04 -3.32 16 20 C -0.15 -1.65 9.75 -26.70 -0.26 -1.91 16 21 C -0.15 -1.68 9.96 -26.70 -0.27 -1.95 16 22 C 0.12 2.61 6.05 -2.53 -0.02 2.59 16 23 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 24 H 0.39 9.85 6.93 45.56 0.32 10.16 16 25 H 0.08 1.82 7.85 -51.93 -0.41 1.41 16 26 H 0.07 1.42 8.03 -51.93 -0.42 1.01 16 27 H 0.06 1.00 6.02 -51.93 -0.31 0.68 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 1.17 5.94 -51.93 -0.31 0.86 16 30 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.08 1.28 7.62 -51.93 -0.40 0.89 16 33 H 0.10 1.29 8.02 -51.93 -0.42 0.87 16 34 H 0.10 0.92 8.14 -51.92 -0.42 0.49 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.51 8.01 -51.93 -0.42 1.10 16 38 H 0.07 1.64 8.09 -51.93 -0.42 1.22 16 LS Contribution 316.39 15.07 4.77 4.77 Total: -1.00 -27.94 316.39 -6.72 -34.66 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -4.86 Total: 11.63 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.31 Total: -1.49 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: 0.03 Total: -34.20 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.37 Total: -26.87 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.04 Total: -3.32 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.94 -6.72 -34.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853184.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.005 kcal (2) G-P(sol) polarization free energy of solvation -27.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds