Wall clock time and date at job start Mon Mar 30 2020 05:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99955 * 2 1 4 4 H 1.48494 * 109.46868 * 239.99734 * 3 2 1 5 5 H 1.48501 * 109.46957 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47379 * 119.99450 * 3 2 1 7 7 C 1.37874 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00221 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00081 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.88611 * 303.87614 * 9 7 2 11 11 C 1.55152 * 111.03812 * 67.78185 * 9 7 2 12 12 C 1.54322 * 102.94239 * 153.59436 * 11 9 7 13 13 N 1.47288 * 107.30557 * 337.81331 * 12 11 9 14 14 C 1.34776 * 125.79586 * 178.92372 * 13 12 11 15 15 O 1.21278 * 120.00155 * 174.80769 * 14 13 12 16 16 C 1.50707 * 119.99643 * 354.81384 * 14 13 12 17 17 C 1.53001 * 115.54887 * 293.12388 * 16 14 13 18 18 C 1.52998 * 109.47002 * 304.10523 * 17 16 14 19 19 F 1.39904 * 109.46913 * 184.49244 * 18 17 16 20 20 C 1.52995 * 117.49785 * 147.45706 * 16 14 13 21 21 C 1.52993 * 117.50005 * 78.79471 * 16 14 13 22 22 C 1.47428 * 108.55842 * 358.93015 * 13 12 11 23 23 H 0.96995 * 120.00151 * 0.02562 * 1 2 3 24 24 H 0.96706 * 113.99734 * 56.11556 * 10 9 7 25 25 H 1.09006 * 110.71924 * 271.95535 * 11 9 7 26 26 H 1.08999 * 110.72253 * 35.04928 * 11 9 7 27 27 H 1.08997 * 109.88612 * 97.22532 * 12 11 9 28 28 H 1.09001 * 109.88178 * 218.23908 * 12 11 9 29 29 H 1.09000 * 109.47063 * 64.10248 * 17 16 14 30 30 H 1.08997 * 109.47378 * 184.10421 * 17 16 14 31 31 H 1.08993 * 109.47248 * 304.49374 * 18 17 16 32 32 H 1.09003 * 109.47501 * 64.49917 * 18 17 16 33 33 H 1.09004 * 117.50070 * 0.02562 * 20 16 14 34 34 H 1.09009 * 117.50138 * 145.01589 * 20 16 14 35 35 H 1.08998 * 117.50328 * 214.97487 * 21 16 14 36 36 H 1.09001 * 117.49844 * 359.97438 * 21 16 14 37 37 H 1.09002 * 110.36589 * 265.25834 * 22 13 12 38 38 H 1.09000 * 110.36673 * 143.04213 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.3514 -2.5681 1.1087 11 6 0.4989 -2.7081 -1.3403 12 6 0.3973 -4.2445 -1.4439 13 7 1.4603 -4.8119 -0.5969 14 6 1.6953 -6.1244 -0.4003 15 8 2.6592 -6.4779 0.2452 16 6 0.7601 -7.1528 -0.9827 17 6 -0.6502 -7.1730 -0.3898 18 6 -0.5636 -7.3631 1.1259 19 9 -1.8530 -7.4842 1.6551 20 6 1.3629 -8.4901 -1.4173 21 6 0.9056 -7.4778 -2.4706 22 6 2.2259 -3.7030 0.0012 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2781 -1.8352 1.1503 25 1 -0.4930 -2.2578 -1.3002 26 1 1.0728 -2.2998 -2.1722 27 1 -0.5775 -4.5765 -1.0868 28 1 0.5388 -4.5564 -2.4787 29 1 -1.1504 -6.2298 -0.6097 30 1 -1.2165 -7.9952 -0.8272 31 1 0.0061 -8.2656 1.3469 32 1 -0.0671 -6.5015 1.5724 33 1 2.4359 -8.6263 -1.2817 34 1 0.7547 -9.3844 -1.2813 35 1 -0.0032 -7.7065 -3.0271 36 1 1.6775 -6.9475 -3.0284 37 1 3.1050 -3.4796 -0.6033 38 1 2.5206 -3.9520 1.0206 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592853184.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:17 Heat of formation + Delta-G solvation = -135.792029 kcal Electronic energy + Delta-G solvation = -21939.349913 eV Core-core repulsion = 18502.841492 eV Total energy + Delta-G solvation = -3436.508421 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.65528 -41.43695 -39.33938 -37.71859 -36.10183 -34.14798 -32.30650 -31.52620 -30.07649 -27.38977 -25.22037 -24.48854 -23.30107 -22.61946 -21.47683 -19.83323 -19.12119 -17.97741 -17.37016 -17.12879 -16.94943 -16.70563 -16.35377 -16.20051 -15.69838 -15.57831 -14.90697 -14.74602 -14.25107 -13.93102 -13.74582 -13.59613 -13.23136 -13.19108 -13.05649 -12.64696 -12.53029 -12.48967 -12.39334 -12.28358 -11.93604 -11.82685 -11.48807 -11.32860 -11.01075 -10.78858 -10.62391 -10.16549 -9.60269 -8.26276 -6.41017 1.42983 1.45074 1.49972 1.52545 1.97509 2.39047 2.68119 2.98557 3.32884 3.50303 3.70139 3.77501 3.81436 3.94477 4.00355 4.10578 4.18698 4.29955 4.34445 4.47198 4.57132 4.62710 4.74337 4.82045 4.86091 4.92531 4.99354 5.08085 5.17289 5.22798 5.27092 5.43008 5.51177 5.75965 6.03864 6.58534 6.63483 7.09883 7.30397 7.43780 8.79930 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.026851 B = 0.005310 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.552712 B = 5271.485410 C = 5673.439370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.037 3.963 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.563 4.563 8 H 0.056 0.944 9 C 0.236 3.764 10 O -0.595 6.595 11 C -0.131 4.131 12 C 0.110 3.890 13 N -0.604 5.604 14 C 0.551 3.449 15 O -0.591 6.591 16 C -0.171 4.171 17 C -0.098 4.098 18 C 0.062 3.938 19 F -0.227 7.227 20 C -0.136 4.136 21 C -0.133 4.133 22 C 0.124 3.876 23 H 0.273 0.727 24 H 0.381 0.619 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.316 -12.619 -7.089 14.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.164 4.164 3 Si 0.787 3.213 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.601 4.601 8 H 0.074 0.926 9 C 0.195 3.805 10 O -0.406 6.406 11 C -0.170 4.170 12 C -0.011 4.011 13 N -0.335 5.335 14 C 0.341 3.659 15 O -0.473 6.473 16 C -0.174 4.174 17 C -0.135 4.135 18 C 0.007 3.993 19 F -0.208 7.208 20 C -0.173 4.173 21 C -0.170 4.170 22 C 0.001 3.999 23 H 0.083 0.917 24 H 0.233 0.767 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.137 0.863 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.106 0.894 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.664 -13.299 -6.618 15.092 hybrid contribution 0.313 1.938 0.417 2.007 sum -2.351 -11.361 -6.201 13.155 Atomic orbital electron populations 1.69608 1.06701 1.28610 1.49997 1.25606 0.95826 1.02060 0.92942 0.85566 0.78442 0.78689 0.78646 1.19482 1.20398 1.20461 1.21679 0.93649 0.91660 1.53135 0.92582 1.19751 0.86360 0.90698 0.83648 1.86085 1.51162 1.52549 1.50766 1.23002 1.01754 0.92719 0.99499 1.22256 0.90159 0.94221 0.94507 1.48672 1.33021 1.04734 1.47078 1.19915 0.84933 0.81598 0.79446 1.90634 1.32291 1.80694 1.43683 1.21174 0.95961 0.98537 1.01776 1.21624 0.93178 1.05391 0.93352 1.21979 0.79432 1.03139 0.94788 1.92733 1.42146 1.97665 1.88241 1.23179 1.01794 0.91837 1.00509 1.23233 1.04790 1.00915 0.88038 1.22153 0.94773 0.86162 0.96829 0.91745 0.76717 0.91015 0.91608 0.90987 0.89300 0.90283 0.86287 0.88985 0.93846 0.89391 0.84835 0.84420 0.88775 0.91083 0.93825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.20 10.79 21.45 0.23 -45.97 16 2 C 0.04 1.86 5.30 84.65 0.45 2.31 16 3 Si 0.96 40.74 29.54 68.60 2.03 42.77 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 6 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.56 -29.32 8.25 25.60 0.21 -29.11 16 8 H 0.06 2.93 7.77 -2.91 -0.02 2.91 16 9 C 0.24 11.37 0.89 -10.15 -0.01 11.36 16 10 O -0.60 -30.89 13.18 -148.98 -1.96 -32.85 16 11 C -0.13 -5.41 5.64 31.78 0.18 -5.23 16 12 C 0.11 3.68 6.40 86.68 0.55 4.24 16 13 N -0.60 -23.12 3.34 -811.11 -2.71 -25.83 16 14 C 0.55 19.92 6.17 87.66 0.54 20.46 16 15 O -0.59 -25.82 17.03 -3.02 -0.05 -25.87 16 16 C -0.17 -4.21 1.30 -52.93 -0.07 -4.28 16 17 C -0.10 -2.18 5.50 30.59 0.17 -2.01 16 18 C 0.06 1.66 7.23 71.98 0.52 2.19 16 19 F -0.23 -6.65 17.36 44.97 0.78 -5.87 16 20 C -0.14 -2.58 9.75 30.62 0.30 -2.29 16 21 C -0.13 -2.31 9.96 30.62 0.30 -2.01 16 22 C 0.12 5.61 6.05 86.85 0.53 6.13 16 23 H 0.27 13.22 8.31 -92.71 -0.77 12.45 16 24 H 0.38 20.04 6.93 -74.05 -0.51 19.52 16 25 H 0.07 3.12 7.85 -2.38 -0.02 3.10 16 26 H 0.07 2.71 8.03 -2.39 -0.02 2.69 16 27 H 0.07 2.26 6.02 -2.39 -0.01 2.24 16 28 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.08 1.89 5.94 -2.39 -0.01 1.88 16 30 H 0.12 1.83 8.10 -2.39 -0.02 1.81 16 31 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.04 1.46 7.62 -2.39 -0.02 1.44 16 33 H 0.09 1.99 8.02 -2.39 -0.02 1.97 16 34 H 0.13 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 3.15 8.01 -2.39 -0.02 3.13 16 38 H 0.04 2.16 8.09 -2.39 -0.02 2.14 16 Total: -1.00 -62.10 316.39 2.55 -59.56 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: 0.56 Total: 32.31 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 3.67 Total: 1.76 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: -2.47 Total: -71.80 kcal Atomic # 8 Polarization: -56.71 SS G_CDS: -2.02 Total: -58.73 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 0.78 Total: -5.87 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -62.10 2.55 -59.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853184.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.237 kcal (2) G-P(sol) polarization free energy of solvation -62.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds