Wall clock time and date at job start Mon Mar 30 2020 05:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99876 * 2 1 4 4 H 1.48501 * 109.46899 * 269.99738 * 3 2 1 5 5 H 1.48496 * 109.47717 * 30.00085 * 3 2 1 6 6 H 1.48498 * 109.46995 * 150.00754 * 3 2 1 7 7 C 1.37876 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99815 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00097 * 359.97438 * 7 2 1 10 10 O 1.42902 * 110.64214 * 56.86357 * 9 7 2 11 11 C 1.55166 * 110.87405 * 293.61301 * 9 7 2 12 12 C 1.55130 * 101.48333 * 205.89719 * 11 9 7 13 13 N 1.47425 * 104.72463 * 37.29657 * 12 11 9 14 14 C 1.34776 * 125.65021 * 155.81271 * 13 12 11 15 15 O 1.21277 * 120.00034 * 174.74699 * 14 13 12 16 16 C 1.50701 * 120.00101 * 354.75104 * 14 13 12 17 17 C 1.53001 * 115.54996 * 66.47770 * 16 14 13 18 18 C 1.53002 * 109.47184 * 65.19255 * 17 16 14 19 19 F 1.39897 * 109.47320 * 174.85436 * 18 17 16 20 20 C 1.53001 * 117.50166 * 212.14910 * 16 14 13 21 21 C 1.52994 * 117.49753 * 280.81275 * 16 14 13 22 22 C 1.47024 * 108.70207 * 335.55009 * 13 12 11 23 23 H 0.97007 * 119.99976 * 359.97438 * 1 2 3 24 24 H 0.96705 * 113.99699 * 303.13467 * 10 9 7 25 25 H 1.08994 * 110.99936 * 324.13587 * 11 9 7 26 26 H 1.08994 * 111.00348 * 87.99352 * 11 9 7 27 27 H 1.08996 * 110.50091 * 278.45239 * 12 11 9 28 28 H 1.09004 * 110.34098 * 156.05740 * 12 11 9 29 29 H 1.09008 * 109.47357 * 305.19786 * 17 16 14 30 30 H 1.08994 * 109.47141 * 185.19645 * 17 16 14 31 31 H 1.08996 * 109.47186 * 294.85604 * 18 17 16 32 32 H 1.08999 * 109.46687 * 54.85894 * 18 17 16 33 33 H 1.08994 * 117.49999 * 215.00335 * 20 16 14 34 34 H 1.09001 * 117.49458 * 0.02562 * 20 16 14 35 35 H 1.08998 * 117.50362 * 359.97329 * 21 16 14 36 36 H 1.09004 * 117.49924 * 144.97228 * 21 16 14 37 37 H 1.09001 * 109.87948 * 120.70466 * 22 13 12 38 38 H 1.08997 * 109.88423 * 241.71246 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 0.3656 -2.5696 -1.1200 11 6 0.4721 -2.6878 1.3281 12 6 0.3740 -4.2338 1.4117 13 7 1.6632 -4.7200 0.8874 14 6 2.2279 -5.9104 1.1711 15 8 3.2478 -6.2473 0.6080 16 6 1.5918 -6.8229 2.1879 17 6 0.2278 -7.3962 1.7982 18 6 0.3890 -8.3184 0.5881 19 9 -0.8350 -8.9334 0.3041 20 6 2.5201 -7.7112 3.0186 21 6 1.8296 -6.5082 3.6661 22 6 2.2279 -3.6938 -0.0011 23 1 -0.4850 0.8401 0.0004 24 1 -0.2691 -1.8414 -1.1659 25 1 1.0326 -2.2825 2.1704 26 1 -0.5188 -2.2380 1.2674 27 1 -0.4478 -4.5980 0.7953 28 1 0.2419 -4.5497 2.4466 29 1 -0.4504 -6.5809 1.5458 30 1 -0.1807 -7.9627 2.6349 31 1 0.7106 -7.7339 -0.2739 32 1 1.1359 -9.0808 0.8093 33 1 2.1592 -8.7038 3.2875 34 1 3.5910 -7.6352 2.8300 35 1 2.4464 -5.6414 3.9033 36 1 1.0141 -6.7092 4.3610 37 1 3.2019 -3.3763 0.3713 38 1 2.3292 -4.0923 -1.0106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592853187.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:20 Heat of formation + Delta-G solvation = -136.708708 kcal Electronic energy + Delta-G solvation = -21804.126539 eV Core-core repulsion = 18367.578368 eV Total energy + Delta-G solvation = -3436.548171 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.63405 -41.46943 -39.37771 -37.75434 -36.14795 -34.16503 -32.24950 -31.45629 -30.12184 -27.42018 -25.25353 -24.51244 -23.31730 -22.65642 -21.42035 -19.83433 -19.16712 -17.98541 -17.29423 -17.19923 -16.95984 -16.73839 -16.33605 -16.14303 -15.80310 -15.61370 -14.82598 -14.78646 -14.21873 -13.87459 -13.73188 -13.56501 -13.25895 -13.14617 -13.13075 -12.69341 -12.58807 -12.43072 -12.40292 -12.27948 -12.01955 -11.83035 -11.49225 -11.31035 -11.04332 -10.79500 -10.62346 -10.16089 -9.67655 -8.27386 -6.41658 1.40811 1.44194 1.48407 1.52574 1.93429 2.38290 2.66501 2.98161 3.34834 3.48525 3.71529 3.76286 3.84641 3.96934 3.98704 4.12233 4.14944 4.25310 4.38021 4.47558 4.54650 4.61941 4.74058 4.85305 4.86584 4.92111 4.99144 5.06483 5.15339 5.21850 5.23372 5.43546 5.49770 5.74533 6.03465 6.55017 6.62952 7.07437 7.29402 7.42602 8.79154 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.028308 B = 0.005025 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.865227 B = 5571.093016 C = 5915.342488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.038 3.962 3 Si 0.960 3.040 4 H -0.279 1.279 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.563 4.563 8 H 0.052 0.948 9 C 0.235 3.765 10 O -0.596 6.596 11 C -0.128 4.128 12 C 0.109 3.891 13 N -0.605 5.605 14 C 0.550 3.450 15 O -0.590 6.590 16 C -0.169 4.169 17 C -0.102 4.102 18 C 0.062 3.938 19 F -0.227 7.227 20 C -0.135 4.135 21 C -0.136 4.136 22 C 0.128 3.872 23 H 0.273 0.727 24 H 0.383 0.617 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.136 0.864 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.139 0.861 37 H 0.059 0.941 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.105 -11.872 9.241 15.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.163 4.163 3 Si 0.786 3.214 4 H -0.205 1.205 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.601 4.601 8 H 0.070 0.930 9 C 0.195 3.805 10 O -0.406 6.406 11 C -0.166 4.166 12 C -0.013 4.013 13 N -0.337 5.337 14 C 0.340 3.660 15 O -0.471 6.471 16 C -0.172 4.172 17 C -0.139 4.139 18 C 0.007 3.993 19 F -0.208 7.208 20 C -0.172 4.172 21 C -0.173 4.173 22 C 0.005 3.995 23 H 0.083 0.917 24 H 0.234 0.766 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.120 0.880 29 H 0.097 0.903 30 H 0.137 0.863 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.154 0.846 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.157 0.843 37 H 0.077 0.923 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.393 -12.546 8.833 15.406 hybrid contribution 0.269 1.812 -0.589 1.924 sum -1.123 -10.734 8.244 13.581 Atomic orbital electron populations 1.69626 1.06593 1.28565 1.49955 1.25586 0.95862 1.01968 0.92924 0.85525 0.78688 0.79052 0.78159 1.20468 1.20062 1.19842 1.21741 0.93448 0.91779 1.53164 0.92972 1.19595 0.86525 0.90506 0.83853 1.86087 1.51530 1.53119 1.49880 1.23143 1.01532 0.92911 0.99043 1.22550 0.84137 0.94862 0.99741 1.48642 1.22838 1.15995 1.46179 1.19997 0.83338 0.80138 0.82517 1.90637 1.27267 1.74800 1.54444 1.21156 0.99015 1.03682 0.93352 1.21664 0.93435 0.99644 0.99188 1.21989 0.82127 0.96727 0.98487 1.92737 1.47897 1.85008 1.95178 1.23164 0.97946 0.96968 0.99142 1.23252 1.03845 0.99750 0.90443 1.21814 0.96925 0.88171 0.92635 0.91695 0.76567 0.91964 0.90540 0.91472 0.88037 0.90277 0.86299 0.93280 0.88680 0.84621 0.89491 0.89247 0.84255 0.92253 0.94189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.78 10.71 21.45 0.23 -45.55 16 2 C 0.04 1.91 5.28 84.65 0.45 2.36 16 3 Si 0.96 40.86 29.54 68.60 2.03 42.88 16 4 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.28 -11.27 7.11 99.48 0.71 -10.57 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.56 -29.58 8.22 25.60 0.21 -29.37 16 8 H 0.05 2.79 7.53 -2.91 -0.02 2.76 16 9 C 0.24 11.39 0.85 -10.35 -0.01 11.38 16 10 O -0.60 -30.49 13.09 -148.98 -1.95 -32.44 16 11 C -0.13 -5.29 5.69 32.07 0.18 -5.11 16 12 C 0.11 3.66 5.44 86.93 0.47 4.13 16 13 N -0.61 -23.22 3.32 -811.35 -2.70 -25.92 16 14 C 0.55 19.66 6.59 87.66 0.58 20.24 16 15 O -0.59 -25.55 17.06 -3.02 -0.05 -25.60 16 16 C -0.17 -4.02 1.00 -52.93 -0.05 -4.08 16 17 C -0.10 -2.05 5.43 30.60 0.17 -1.89 16 18 C 0.06 1.43 7.35 71.98 0.53 1.96 16 19 F -0.23 -5.85 17.36 44.97 0.78 -5.07 16 20 C -0.14 -2.53 9.78 30.62 0.30 -2.23 16 21 C -0.14 -2.43 9.59 30.62 0.29 -2.14 16 22 C 0.13 5.88 6.22 86.73 0.54 6.41 16 23 H 0.27 13.08 8.31 -92.70 -0.77 12.31 16 24 H 0.38 19.72 6.98 -74.05 -0.52 19.20 16 25 H 0.06 2.62 8.04 -2.39 -0.02 2.60 16 26 H 0.08 3.30 7.78 -2.39 -0.02 3.28 16 27 H 0.07 2.23 7.60 -2.39 -0.02 2.21 16 28 H 0.10 2.66 7.28 -2.38 -0.02 2.64 16 29 H 0.08 1.74 6.16 -2.38 -0.01 1.72 16 30 H 0.12 1.63 8.09 -2.39 -0.02 1.61 16 31 H 0.05 1.39 7.87 -2.39 -0.02 1.37 16 32 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.09 1.98 8.01 -2.39 -0.02 1.96 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.14 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.06 2.81 7.63 -2.39 -0.02 2.80 16 38 H 0.04 1.96 8.07 -2.39 -0.02 1.94 16 Total: -1.00 -61.92 315.78 2.55 -59.38 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 0.55 Total: 30.65 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 3.66 Total: 1.67 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -2.47 Total: -71.47 kcal Atomic # 8 Polarization: -56.04 SS G_CDS: -2.00 Total: -58.04 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.78 Total: -5.07 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.88 kcal Total: -61.92 2.55 -59.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853187.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.332 kcal (2) G-P(sol) polarization free energy of solvation -61.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds