Wall clock time and date at job start Mon Mar 30 2020 05:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00292 * 2 1 4 4 H 1.48499 * 109.47042 * 269.99948 * 3 2 1 5 5 H 1.48503 * 109.47343 * 30.00026 * 3 2 1 6 6 H 1.48504 * 109.47139 * 150.00067 * 3 2 1 7 7 C 1.37876 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00400 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00033 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47046 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47119 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47620 * 180.02562 * 11 10 9 13 13 O 1.21276 * 119.99526 * 0.02562 * 12 11 10 14 14 N 1.34772 * 120.00117 * 180.02562 * 12 11 10 15 15 C 1.46504 * 119.99698 * 174.97138 * 14 12 11 16 16 C 1.52998 * 110.45558 * 297.33721 * 15 14 12 17 17 C 1.52994 * 109.47238 * 302.59999 * 16 15 14 18 18 O 1.42902 * 109.47214 * 178.29677 * 17 16 15 19 19 C 1.54503 * 110.62929 * 60.02285 * 15 14 12 20 20 C 1.54485 * 104.06377 * 118.70182 * 19 15 14 21 21 O 1.44422 * 104.79972 * 336.01934 * 20 19 15 22 22 C 1.44420 * 105.27586 * 40.51297 * 21 20 19 23 23 H 0.97002 * 119.99668 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46720 * 59.99938 * 9 7 2 25 25 H 1.08993 * 109.46789 * 300.00030 * 9 7 2 26 26 H 1.09002 * 109.47086 * 60.00024 * 10 9 7 27 27 H 1.08994 * 109.47217 * 300.00236 * 10 9 7 28 28 H 1.09001 * 109.47178 * 59.99524 * 11 10 9 29 29 H 1.09004 * 109.47219 * 300.00432 * 11 10 9 30 30 H 0.96994 * 120.00528 * 354.96924 * 14 12 11 31 31 H 1.09000 * 109.47041 * 182.59756 * 16 15 14 32 32 H 1.08998 * 109.47283 * 62.60262 * 16 15 14 33 33 H 1.08996 * 109.47337 * 58.30118 * 17 16 15 34 34 H 1.09000 * 109.47352 * 298.29731 * 17 16 15 35 35 H 0.96701 * 114.00191 * 179.97438 * 18 17 16 36 36 H 1.08998 * 110.51550 * 237.34732 * 19 15 14 37 37 H 1.09010 * 110.51425 * 0.05863 * 19 15 14 38 38 H 1.09001 * 110.37032 * 217.19601 * 20 19 15 39 39 H 1.08995 * 110.37047 * 94.85567 * 20 19 15 40 40 H 1.09004 * 110.37583 * 200.64958 * 22 21 20 41 41 H 1.09008 * 110.37337 * 78.31550 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5513 -2.6368 -0.0022 12 6 6.0537 -4.0576 -0.0027 13 8 5.2655 -4.9794 -0.0026 14 7 7.3787 -4.3039 -0.0033 15 6 7.8679 -5.6804 0.1074 16 6 7.4469 -6.2915 1.4454 17 6 7.9764 -5.4260 2.5905 18 8 7.5497 -5.9748 3.8390 19 6 7.3482 -6.5390 -1.0673 20 6 8.6322 -6.9987 -1.7931 21 8 9.6264 -6.0106 -1.4453 22 6 9.4043 -5.7229 -0.0476 23 1 -0.4850 0.8401 -0.0004 24 1 3.8751 -0.6806 0.8888 25 1 3.8744 -0.6802 -0.8911 26 1 3.6577 -3.1507 -0.8907 27 1 3.6584 -3.1503 0.8892 28 1 5.9155 -2.1226 0.8872 29 1 5.9140 -2.1233 -0.8927 30 1 8.0085 -3.5699 -0.0770 31 1 7.8575 -7.2976 1.5305 32 1 6.3592 -6.3375 1.4976 33 1 7.5898 -4.4120 2.4883 34 1 9.0656 -5.4047 2.5563 35 1 7.8501 -5.4760 4.6111 36 1 6.7914 -7.3988 -0.6950 37 1 6.7270 -5.9396 -1.7330 38 1 8.4736 -7.0141 -2.8714 39 1 8.9360 -7.9838 -1.4392 40 1 9.8391 -4.7585 0.2151 41 1 9.8267 -6.5124 0.5741 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594346199.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:09 Heat of formation + Delta-G solvation = -147.960274 kcal Electronic energy + Delta-G solvation = -21423.626474 eV Core-core repulsion = 18110.050704 eV Total energy + Delta-G solvation = -3313.575770 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.86336 -38.77302 -37.16837 -35.11045 -34.25141 -32.35851 -31.69557 -30.51829 -28.52744 -27.69392 -24.19538 -23.77090 -22.40449 -21.20817 -19.89196 -19.60044 -17.70643 -17.27936 -16.81733 -16.51905 -16.06289 -15.72698 -15.44177 -15.05447 -14.63758 -14.25719 -14.21282 -13.60224 -13.47671 -13.02931 -12.65922 -12.43941 -12.31936 -12.07930 -11.85884 -11.64703 -11.57734 -11.39723 -10.99685 -10.92534 -10.78748 -10.25239 -10.12692 -9.98161 -9.82915 -9.70105 -9.38610 -9.15509 -9.11390 -8.51043 -6.00636 -3.98418 2.80644 3.06952 3.31336 3.38442 3.41074 3.51542 3.91453 4.16168 4.43256 4.46998 4.76775 4.79017 4.85147 4.88490 4.95666 5.08445 5.16580 5.23592 5.32623 5.34343 5.44279 5.52989 5.57831 5.64374 5.68177 5.89929 6.01491 6.09199 6.33707 6.48584 6.55511 6.68444 6.91831 7.36903 7.37902 7.45302 7.49302 7.82699 8.35875 8.59329 9.06144 9.61411 11.13127 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.024314 B = 0.003789 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.307303 B = 7387.221226 C = 7809.815951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.086 4.086 11 C -0.142 4.142 12 C 0.515 3.485 13 O -0.526 6.526 14 N -0.730 5.730 15 C 0.151 3.849 16 C -0.125 4.125 17 C 0.078 3.922 18 O -0.573 6.573 19 C -0.150 4.150 20 C 0.043 3.957 21 O -0.371 6.371 22 C 0.044 3.956 23 H 0.262 0.738 24 H 0.014 0.986 25 H 0.010 0.990 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.400 0.600 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.041 0.959 35 H 0.379 0.621 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.096 0.904 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.421 -11.276 1.837 26.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.091 0.909 9 C -0.052 4.052 10 C -0.125 4.125 11 C -0.182 4.182 12 C 0.303 3.697 13 O -0.400 6.400 14 N -0.385 5.385 15 C 0.064 3.936 16 C -0.164 4.164 17 C 0.000 4.000 18 O -0.378 6.378 19 C -0.189 4.189 20 C -0.034 4.034 21 O -0.290 6.290 22 C -0.034 4.034 23 H 0.072 0.928 24 H 0.033 0.967 25 H 0.029 0.971 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.235 0.765 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.226 0.774 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.115 0.885 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 22.555 -12.177 1.310 25.665 hybrid contribution 0.781 1.676 0.432 1.900 sum 23.336 -10.500 1.742 25.649 Atomic orbital electron populations 1.69924 1.06312 1.26787 1.51337 1.25050 0.94737 0.99140 0.94700 0.86761 0.80292 0.83665 0.78416 1.20342 1.21439 1.19093 1.21163 0.89525 0.94541 1.50448 0.90949 1.19605 0.97335 0.92179 0.96055 1.21255 0.89142 0.99532 1.02523 1.21884 1.00762 0.91897 1.03642 1.21151 0.81312 0.92652 0.74620 1.90684 1.55143 1.46511 1.47695 1.46254 1.07778 1.07402 1.77056 1.21511 0.93695 0.83425 0.94993 1.21871 1.04603 0.98905 0.91007 1.22132 0.96999 0.96808 0.84011 1.86485 1.79130 1.56435 1.15757 1.23269 0.98049 1.00660 0.96883 1.23526 0.87024 0.91861 1.00998 1.89153 1.54903 1.60301 1.24628 1.23738 0.93097 1.02247 0.84282 0.92791 0.96723 0.97124 0.92112 0.92079 0.89454 0.89414 0.76528 0.90386 0.88705 0.93304 0.94056 0.77393 0.89443 0.89402 0.88787 0.92030 0.88539 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.42 13.96 55.43 0.77 -27.65 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -15.17 9.66 -34.44 -0.33 -15.51 16 8 H 0.07 2.31 7.99 -52.49 -0.42 1.89 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.46 16 10 C -0.09 -1.77 4.44 -26.73 -0.12 -1.89 16 11 C -0.14 -2.13 5.70 -27.89 -0.16 -2.28 16 12 C 0.51 7.45 7.04 -10.99 -0.08 7.38 16 13 O -0.53 -9.55 13.33 5.56 0.07 -9.47 16 14 N -0.73 -7.63 4.27 -46.16 -0.20 -7.83 16 15 C 0.15 1.47 0.66 -130.25 -0.09 1.39 16 16 C -0.13 -1.33 4.17 -26.73 -0.11 -1.45 16 17 C 0.08 0.74 6.70 37.15 0.25 0.98 16 18 O -0.57 -6.05 13.66 -35.23 -0.48 -6.53 16 19 C -0.15 -1.58 5.48 -25.16 -0.14 -1.72 16 20 C 0.04 0.37 7.63 37.94 0.29 0.66 16 21 O -0.37 -3.72 11.65 -35.23 -0.41 -4.13 16 22 C 0.04 0.34 5.96 37.93 0.23 0.57 16 23 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 24 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 25 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 26 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 27 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.40 3.13 8.28 -40.82 -0.34 2.79 16 31 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 32 H 0.09 1.35 6.69 -51.93 -0.35 1.01 16 33 H 0.05 0.48 7.53 -51.93 -0.39 0.09 16 34 H 0.04 0.29 7.50 -51.93 -0.39 -0.10 16 35 H 0.38 2.25 9.12 45.56 0.42 2.67 16 36 H 0.09 0.92 7.73 -51.93 -0.40 0.52 16 37 H 0.09 1.12 7.16 -51.92 -0.37 0.75 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.59 7.75 -51.93 -0.40 0.19 16 41 H 0.08 0.50 7.83 -51.92 -0.41 0.09 16 LS Contribution 329.56 15.07 4.97 4.97 Total: -1.00 -35.54 329.56 -6.35 -41.89 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.94 Total: 2.17 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -0.47 Total: -10.51 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.58 Total: -35.48 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.82 Total: -20.14 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.54 -6.35 -41.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594346199.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.069 kcal (2) G-P(sol) polarization free energy of solvation -35.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds