Wall clock time and date at job start Mon Mar 30 2020 05:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00292 * 2 1 4 4 H 1.48499 * 109.47042 * 269.99948 * 3 2 1 5 5 H 1.48503 * 109.47343 * 30.00026 * 3 2 1 6 6 H 1.48504 * 109.47139 * 150.00067 * 3 2 1 7 7 C 1.37876 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00400 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00033 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47046 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47119 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47620 * 180.02562 * 11 10 9 13 13 O 1.21276 * 119.99526 * 0.02562 * 12 11 10 14 14 N 1.34772 * 120.00117 * 180.02562 * 12 11 10 15 15 C 1.46504 * 119.99698 * 174.97138 * 14 12 11 16 16 C 1.52998 * 110.45558 * 297.33721 * 15 14 12 17 17 C 1.52994 * 109.47238 * 302.59999 * 16 15 14 18 18 O 1.42902 * 109.47214 * 178.29677 * 17 16 15 19 19 C 1.54503 * 110.62929 * 60.02285 * 15 14 12 20 20 C 1.54485 * 104.06377 * 118.70182 * 19 15 14 21 21 O 1.44422 * 104.79972 * 336.01934 * 20 19 15 22 22 C 1.44420 * 105.27586 * 40.51297 * 21 20 19 23 23 H 0.97002 * 119.99668 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46720 * 59.99938 * 9 7 2 25 25 H 1.08993 * 109.46789 * 300.00030 * 9 7 2 26 26 H 1.09002 * 109.47086 * 60.00024 * 10 9 7 27 27 H 1.08994 * 109.47217 * 300.00236 * 10 9 7 28 28 H 1.09001 * 109.47178 * 59.99524 * 11 10 9 29 29 H 1.09004 * 109.47219 * 300.00432 * 11 10 9 30 30 H 0.96994 * 120.00528 * 354.96924 * 14 12 11 31 31 H 1.09000 * 109.47041 * 182.59756 * 16 15 14 32 32 H 1.08998 * 109.47283 * 62.60262 * 16 15 14 33 33 H 1.08996 * 109.47337 * 58.30118 * 17 16 15 34 34 H 1.09000 * 109.47352 * 298.29731 * 17 16 15 35 35 H 0.96701 * 114.00191 * 179.97438 * 18 17 16 36 36 H 1.08998 * 110.51550 * 237.34732 * 19 15 14 37 37 H 1.09010 * 110.51425 * 0.05863 * 19 15 14 38 38 H 1.09001 * 110.37032 * 217.19601 * 20 19 15 39 39 H 1.08995 * 110.37047 * 94.85567 * 20 19 15 40 40 H 1.09004 * 110.37583 * 200.64958 * 22 21 20 41 41 H 1.09008 * 110.37337 * 78.31550 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5513 -2.6368 -0.0022 12 6 6.0537 -4.0576 -0.0027 13 8 5.2655 -4.9794 -0.0026 14 7 7.3787 -4.3039 -0.0033 15 6 7.8679 -5.6804 0.1074 16 6 7.4469 -6.2915 1.4454 17 6 7.9764 -5.4260 2.5905 18 8 7.5497 -5.9748 3.8390 19 6 7.3482 -6.5390 -1.0673 20 6 8.6322 -6.9987 -1.7931 21 8 9.6264 -6.0106 -1.4453 22 6 9.4043 -5.7229 -0.0476 23 1 -0.4850 0.8401 -0.0004 24 1 3.8751 -0.6806 0.8888 25 1 3.8744 -0.6802 -0.8911 26 1 3.6577 -3.1507 -0.8907 27 1 3.6584 -3.1503 0.8892 28 1 5.9155 -2.1226 0.8872 29 1 5.9140 -2.1233 -0.8927 30 1 8.0085 -3.5699 -0.0770 31 1 7.8575 -7.2976 1.5305 32 1 6.3592 -6.3375 1.4976 33 1 7.5898 -4.4120 2.4883 34 1 9.0656 -5.4047 2.5563 35 1 7.8501 -5.4760 4.6111 36 1 6.7914 -7.3988 -0.6950 37 1 6.7270 -5.9396 -1.7330 38 1 8.4736 -7.0141 -2.8714 39 1 8.9360 -7.9838 -1.4392 40 1 9.8391 -4.7585 0.2151 41 1 9.8267 -6.5124 0.5741 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594346199.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:08 Heat of formation + Delta-G solvation = -177.462244 kcal Electronic energy + Delta-G solvation = -21424.905776 eV Core-core repulsion = 18110.050704 eV Total energy + Delta-G solvation = -3314.855072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.74895 -39.77569 -37.92293 -36.28710 -35.79513 -34.17830 -32.91577 -31.26980 -30.12170 -28.55662 -25.71093 -24.72486 -23.16010 -22.58859 -21.43223 -20.55755 -18.96669 -18.45452 -18.02892 -17.68484 -16.93678 -16.53009 -16.49067 -16.26152 -15.87898 -15.51188 -15.09014 -14.94536 -14.83495 -14.57544 -13.84714 -13.73043 -13.41181 -13.22977 -13.01056 -12.76737 -12.64192 -12.46344 -12.39326 -12.14621 -11.79245 -11.73860 -11.69778 -11.50145 -11.33363 -10.95703 -10.84883 -10.75535 -10.58303 -10.11270 -8.28180 -6.33955 1.38033 1.41638 1.53640 1.68193 2.12936 2.38724 2.84728 3.07007 3.24743 3.42509 3.72546 3.87845 4.03310 4.11354 4.13296 4.19084 4.20761 4.25280 4.37330 4.46704 4.56637 4.69907 4.76227 4.78326 4.88228 4.91409 4.92471 4.96189 5.03353 5.04033 5.15075 5.49709 5.57546 5.59728 5.67799 5.74678 6.30219 6.57942 6.74867 6.86987 7.30145 7.32361 8.89657 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.024314 B = 0.003789 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.307303 B = 7387.221226 C = 7809.815951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.003 4.003 3 Si 0.962 3.038 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.235 1.235 7 C -0.541 4.541 8 H 0.018 0.982 9 C -0.009 4.009 10 C -0.079 4.079 11 C -0.132 4.132 12 C 0.515 3.485 13 O -0.573 6.573 14 N -0.709 5.709 15 C 0.149 3.851 16 C -0.123 4.123 17 C 0.078 3.922 18 O -0.598 6.598 19 C -0.153 4.153 20 C 0.048 3.952 21 O -0.386 6.386 22 C 0.049 3.951 23 H 0.266 0.734 24 H 0.030 0.970 25 H 0.029 0.971 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.417 0.583 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.398 0.602 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.121 0.879 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.745 -9.673 2.144 29.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.199 4.199 3 Si 0.784 3.216 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.158 1.158 7 C -0.579 4.579 8 H 0.036 0.964 9 C -0.046 4.046 10 C -0.117 4.117 11 C -0.172 4.172 12 C 0.303 3.697 13 O -0.451 6.451 14 N -0.364 5.364 15 C 0.063 3.937 16 C -0.161 4.161 17 C 0.001 3.999 18 O -0.407 6.407 19 C -0.192 4.192 20 C -0.029 4.029 21 O -0.305 6.305 22 C -0.028 4.028 23 H 0.075 0.925 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.255 0.745 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.248 0.752 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.139 0.861 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 26.945 -10.574 1.626 28.991 hybrid contribution -0.668 1.054 0.354 1.297 sum 26.277 -9.520 1.980 28.018 Atomic orbital electron populations 1.70109 1.08723 1.28297 1.52692 1.26202 0.95737 1.04140 0.93824 0.85490 0.79665 0.77031 0.79398 1.18906 1.21179 1.15838 1.21563 0.92755 0.92800 1.50745 0.96370 1.19544 0.93435 0.94392 0.97254 1.21018 0.93587 0.97017 1.00122 1.21728 0.96205 0.92916 1.06333 1.21065 0.82377 0.91943 0.74325 1.90687 1.56677 1.47664 1.50080 1.46009 1.06586 1.08606 1.75199 1.21604 0.95485 0.82487 0.94158 1.21810 1.01851 1.00184 0.92301 1.22181 0.98851 0.95804 0.83067 1.86440 1.79851 1.57451 1.16961 1.23231 0.98725 1.00233 0.97031 1.23548 0.85683 0.92483 1.01158 1.89140 1.54930 1.60627 1.25816 1.23874 0.90862 1.04384 0.83670 0.92495 0.95156 0.95314 0.94651 0.94692 0.86606 0.86698 0.74453 0.89352 0.93132 0.93857 0.90549 0.75245 0.90329 0.92175 0.88356 0.90096 0.86075 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.16 13.96 21.45 0.30 -61.86 16 2 C 0.00 -0.19 5.47 84.66 0.46 0.27 16 3 Si 0.96 43.97 27.47 68.60 1.88 45.86 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.24 -9.55 6.54 99.48 0.65 -8.90 16 7 C -0.54 -32.72 9.66 25.60 0.25 -32.47 16 8 H 0.02 1.24 7.99 -2.91 -0.02 1.21 16 9 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 10 C -0.08 -3.30 4.44 30.59 0.14 -3.16 16 11 C -0.13 -3.68 5.70 29.85 0.17 -3.51 16 12 C 0.51 14.58 7.04 87.66 0.62 15.20 16 13 O -0.57 -21.75 13.33 -3.02 -0.04 -21.79 16 14 N -0.71 -13.33 4.27 -418.35 -1.79 -15.12 16 15 C 0.15 2.66 0.66 4.62 0.00 2.67 16 16 C -0.12 -2.50 4.17 30.59 0.13 -2.38 16 17 C 0.08 1.29 6.70 71.98 0.48 1.77 16 18 O -0.60 -11.75 13.66 -148.98 -2.04 -13.78 16 19 C -0.15 -3.20 5.48 31.61 0.17 -3.02 16 20 C 0.05 0.75 7.63 72.49 0.55 1.30 16 21 O -0.39 -6.56 11.65 -148.98 -1.74 -8.29 16 22 C 0.05 0.58 5.96 72.48 0.43 1.01 16 23 H 0.27 15.99 8.31 -92.71 -0.77 15.21 16 24 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 25 H 0.03 1.25 7.57 -2.39 -0.02 1.23 16 26 H 0.03 1.61 8.10 -2.39 -0.02 1.59 16 27 H 0.03 1.59 8.10 -2.39 -0.02 1.57 16 28 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.42 4.94 8.28 -92.71 -0.77 4.18 16 31 H 0.09 1.57 8.09 -2.39 -0.02 1.55 16 32 H 0.05 1.50 6.69 -2.39 -0.02 1.49 16 33 H 0.04 0.75 7.53 -2.39 -0.02 0.73 16 34 H 0.08 0.73 7.50 -2.39 -0.02 0.71 16 35 H 0.40 3.98 9.12 -74.06 -0.68 3.30 16 36 H 0.08 1.73 7.73 -2.39 -0.02 1.71 16 37 H 0.06 1.58 7.16 -2.38 -0.02 1.57 16 38 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.12 0.86 7.75 -2.39 -0.02 0.84 16 41 H 0.10 0.82 7.83 -2.38 -0.02 0.80 16 Total: -1.00 -82.53 329.56 -0.36 -82.89 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -0.47 Total: 14.72 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 3.53 Total: -22.62 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -1.49 Total: -76.98 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -3.81 Total: -43.86 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.86 kcal Total: -82.53 -0.36 -82.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594346199.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.576 kcal (2) G-P(sol) polarization free energy of solvation -82.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds