Wall clock time and date at job start Mon Mar 30 2020 05:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99819 * 2 1 4 4 N 1.46904 * 109.47208 * 124.35220 * 3 2 1 5 5 C 1.46898 * 110.99899 * 298.55914 * 4 3 2 6 6 C 1.50705 * 109.46805 * 288.42204 * 5 4 3 7 7 H 1.07996 * 120.00018 * 4.89252 * 6 5 4 8 8 C 1.37880 * 119.99649 * 184.88793 * 6 5 4 9 9 N 1.31511 * 120.00222 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99693 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47193 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46712 * 120.00231 * 10 8 6 13 13 H 1.48496 * 109.47448 * 240.00155 * 10 8 6 14 14 C 1.46899 * 110.99905 * 62.51018 * 4 3 2 15 15 C 1.53006 * 109.46994 * 77.37729 * 14 4 3 16 16 O 1.42897 * 109.22274 * 294.29943 * 15 14 4 17 17 C 1.52579 * 109.22342 * 53.70518 * 15 14 4 18 18 C 1.53024 * 109.99318 * 191.00117 * 17 15 14 19 19 S 1.81743 * 108.81453 * 296.93646 * 18 17 15 20 20 C 1.81744 * 102.22178 * 53.27080 * 19 18 17 21 21 C 1.52590 * 109.22425 * 174.89637 * 15 14 4 22 22 H 1.07994 * 119.99891 * 180.02562 * 1 2 3 23 23 H 1.08003 * 119.99982 * 0.02562 * 1 2 3 24 24 H 1.07993 * 120.00137 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.47317 * 4.34988 * 3 2 1 26 26 H 1.09000 * 109.46950 * 244.35071 * 3 2 1 27 27 H 1.08991 * 109.47606 * 48.42530 * 5 4 3 28 28 H 1.09002 * 109.46841 * 168.43149 * 5 4 3 29 29 H 0.97001 * 120.00259 * 180.02562 * 9 8 6 30 30 H 1.09001 * 109.47403 * 317.38338 * 14 4 3 31 31 H 1.08995 * 109.47207 * 197.37715 * 14 4 3 32 32 H 0.96699 * 114.00023 * 179.97438 * 16 15 14 33 33 H 1.08996 * 109.39171 * 311.09681 * 17 15 14 34 34 H 1.08994 * 109.39084 * 70.80458 * 17 15 14 35 35 H 1.09006 * 109.58965 * 177.13613 * 18 17 15 36 36 H 1.09005 * 109.69572 * 56.80347 * 18 17 15 37 37 H 1.09006 * 109.57768 * 186.92597 * 20 19 18 38 38 H 1.08994 * 109.68771 * 66.60473 * 20 19 18 39 39 H 1.08996 * 109.38600 * 289.19542 * 21 15 14 40 40 H 1.08998 * 109.38624 * 48.89959 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9852 1.3385 1.1435 5 6 2.2520 1.2507 2.4133 6 6 1.5179 2.5436 2.6599 7 1 1.5242 3.3198 1.9091 8 6 0.8383 2.7353 3.8442 9 7 0.8309 1.7902 4.7586 10 14 -0.0710 4.3381 4.1502 11 1 0.0911 5.2313 2.9749 12 1 -1.5135 4.0562 4.3619 13 1 0.4861 5.0008 5.3566 14 6 3.9900 0.2719 1.0409 15 6 5.0596 0.6749 0.0237 16 8 4.4692 0.7486 -1.2755 17 6 5.6199 2.0434 0.3995 18 6 6.4842 2.5860 -0.7408 19 16 7.9041 1.4768 -0.9789 20 6 7.0999 -0.1411 -1.1754 21 6 6.1655 -0.3765 0.0142 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 1.8500 -0.9352 0.0004 25 1 1.3577 2.1322 0.0779 26 1 2.6304 1.3974 -0.9264 27 1 1.5362 0.4302 2.3637 28 1 2.9547 1.0710 3.2269 29 1 0.3525 1.9249 5.5916 30 1 3.5089 -0.6506 0.7159 31 1 4.4548 0.1158 2.0144 32 1 5.0879 0.9998 -1.9749 33 1 4.7966 2.7324 0.5874 34 1 6.2257 1.9513 1.3009 35 1 6.8394 3.5847 -0.4869 36 1 5.8969 2.6296 -1.6581 37 1 7.8574 -0.9243 -1.2053 38 1 6.5238 -0.1548 -2.1006 39 1 6.7356 -0.3102 0.9409 40 1 5.7209 -1.3685 -0.0654 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595501122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:53 Heat of formation + Delta-G solvation = -26.053561 kcal Electronic energy + Delta-G solvation = -19980.227406 eV Core-core repulsion = 17114.690779 eV Total energy + Delta-G solvation = -2865.536627 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.45866 -36.63698 -33.27248 -32.77013 -32.01192 -31.56114 -28.94977 -26.80757 -24.93530 -23.18433 -23.02570 -20.80877 -19.98637 -18.70001 -17.51247 -16.45271 -16.21820 -15.39986 -15.03444 -14.74037 -14.48179 -14.17276 -13.75900 -13.53993 -13.12646 -12.88485 -12.77348 -12.53008 -12.15567 -11.85258 -11.69789 -11.40982 -11.09785 -11.05532 -10.88277 -10.81168 -10.64516 -10.47207 -10.29802 -9.88863 -9.69052 -9.60260 -9.13250 -8.61576 -8.39332 -7.77748 -7.19178 -5.99943 -4.00021 1.66250 2.43447 2.96455 3.31629 3.39269 3.43657 4.30720 4.41630 4.56542 4.64882 4.81764 4.96187 5.02532 5.27709 5.29747 5.36509 5.42087 5.60771 5.61997 5.73298 5.79267 5.89882 5.93678 6.06125 6.21675 6.25121 6.42497 6.55783 6.64946 6.89662 7.24453 7.28595 7.37851 7.48500 7.70823 7.84308 8.11865 8.27082 8.57401 9.07150 9.63451 11.10974 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.023072 B = 0.005315 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.284349 B = 5267.183966 C = 5856.065857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.169 4.169 3 C 0.083 3.917 4 N -0.521 5.521 5 C 0.188 3.812 6 C -0.498 4.498 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.894 3.106 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.064 3.936 15 C 0.137 3.863 16 O -0.546 6.546 17 C -0.140 4.140 18 C -0.080 4.080 19 S -0.285 6.285 20 C -0.081 4.081 21 C -0.149 4.149 22 H 0.082 0.918 23 H 0.095 0.905 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.090 0.910 27 H -0.003 1.003 28 H 0.027 0.973 29 H 0.259 0.741 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.356 0.644 33 H 0.112 0.888 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.295 -3.585 -11.853 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.189 4.189 3 C -0.044 4.044 4 N -0.243 5.243 5 C 0.064 3.936 6 C -0.537 4.537 7 H 0.079 0.921 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.065 4.065 15 C 0.096 3.904 16 O -0.353 6.353 17 C -0.179 4.179 18 C -0.228 4.228 19 S -0.059 6.059 20 C -0.229 4.229 21 C -0.188 4.188 22 H 0.100 0.900 23 H 0.114 0.886 24 H 0.111 0.889 25 H 0.093 0.907 26 H 0.108 0.892 27 H 0.015 0.985 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.205 0.795 33 H 0.131 0.869 34 H 0.095 0.905 35 H 0.124 0.876 36 H 0.102 0.898 37 H 0.122 0.878 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.052 -3.067 -11.357 16.141 hybrid contribution -1.700 -0.255 0.173 1.728 sum 9.351 -3.322 -11.184 14.952 Atomic orbital electron populations 1.23666 0.96130 1.00901 1.02206 1.23556 0.96438 1.00121 0.98769 1.21469 0.94575 0.93477 0.94907 1.62328 1.15170 1.42512 1.04298 1.19806 0.92425 0.96878 0.84533 1.21145 1.29966 1.00967 1.01592 0.92055 1.24957 0.96829 0.96693 0.96114 1.69963 1.43342 1.33022 1.07635 0.86504 0.79380 0.83759 0.78151 1.19719 1.21214 1.21104 1.22059 0.93503 0.94272 0.96655 1.21257 0.92256 0.93092 0.83843 1.86701 1.39652 1.92144 1.16788 1.22270 1.00418 0.98303 0.96928 1.23566 0.96108 1.00436 1.02696 1.86867 1.17817 1.05571 1.95659 1.23417 1.01601 0.96363 1.01518 1.22394 0.97122 1.00860 0.98446 0.89955 0.88638 0.88874 0.90706 0.89215 0.98538 0.95484 0.93108 0.94325 0.90368 0.79525 0.86937 0.90475 0.87601 0.89786 0.87772 0.89733 0.89789 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.46 14.32 29.01 0.42 -3.04 16 2 C -0.17 -3.14 7.48 -36.03 -0.27 -3.41 16 3 C 0.08 1.60 5.45 -4.97 -0.03 1.58 16 4 N -0.52 -10.56 3.33 -237.51 -0.79 -11.35 16 5 C 0.19 4.76 4.59 -4.97 -0.02 4.73 16 6 C -0.50 -13.70 8.65 -34.44 -0.30 -14.00 16 7 H 0.06 1.68 7.32 -52.49 -0.38 1.30 16 8 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 10 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.06 1.09 4.16 -3.82 -0.02 1.07 16 15 C 0.14 1.83 0.84 -91.04 -0.08 1.75 16 16 O -0.55 -7.23 9.68 -35.23 -0.34 -7.57 16 17 C -0.14 -1.90 4.79 -26.93 -0.13 -2.03 16 18 C -0.08 -0.90 6.05 37.17 0.22 -0.67 16 19 S -0.28 -3.21 22.33 -107.50 -2.40 -5.61 16 20 C -0.08 -0.78 6.05 37.21 0.23 -0.56 16 21 C -0.15 -1.65 4.86 -26.89 -0.13 -1.78 16 22 H 0.08 1.34 8.06 -52.49 -0.42 0.91 16 23 H 0.10 1.76 7.84 -52.48 -0.41 1.35 16 24 H 0.09 1.67 6.60 -52.49 -0.35 1.32 16 25 H 0.07 1.58 6.77 -51.93 -0.35 1.23 16 26 H 0.09 1.60 5.38 -51.93 -0.28 1.32 16 27 H 0.00 -0.09 6.78 -51.93 -0.35 -0.44 16 28 H 0.03 0.74 7.68 -51.93 -0.40 0.34 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.04 0.67 5.94 -51.93 -0.31 0.36 16 31 H 0.08 1.35 7.62 -51.93 -0.40 0.96 16 32 H 0.36 3.77 5.15 45.56 0.23 4.00 16 33 H 0.11 1.84 7.04 -51.93 -0.37 1.48 16 34 H 0.08 1.08 8.06 -51.93 -0.42 0.66 16 35 H 0.11 1.14 8.14 -51.92 -0.42 0.71 16 36 H 0.08 0.87 6.56 -51.92 -0.34 0.53 16 37 H 0.10 0.89 8.14 -51.92 -0.42 0.46 16 38 H 0.08 0.74 6.56 -51.93 -0.34 0.40 16 39 H 0.08 0.95 8.06 -51.93 -0.42 0.54 16 40 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 LS Contribution 316.26 15.07 4.77 4.77 Total: -1.00 -29.20 316.26 -8.95 -38.16 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.70 Total: 5.83 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -0.20 Total: -14.92 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: -0.05 Total: -37.22 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.34 Total: -7.57 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -3.21 SS G_CDS: -2.40 Total: -5.61 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.20 -8.95 -38.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595501122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.103 kcal (2) G-P(sol) polarization free energy of solvation -29.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds