Wall clock time and date at job start Mon Mar 30 2020 05:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99819 * 2 1 4 4 N 1.46904 * 109.47208 * 124.35220 * 3 2 1 5 5 C 1.46898 * 110.99899 * 298.55914 * 4 3 2 6 6 C 1.50705 * 109.46805 * 288.42204 * 5 4 3 7 7 H 1.07996 * 120.00018 * 4.89252 * 6 5 4 8 8 C 1.37880 * 119.99649 * 184.88793 * 6 5 4 9 9 N 1.31511 * 120.00222 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99693 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47193 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46712 * 120.00231 * 10 8 6 13 13 H 1.48496 * 109.47448 * 240.00155 * 10 8 6 14 14 C 1.46899 * 110.99905 * 62.51018 * 4 3 2 15 15 C 1.53006 * 109.46994 * 77.37729 * 14 4 3 16 16 O 1.42897 * 109.22274 * 294.29943 * 15 14 4 17 17 C 1.52579 * 109.22342 * 53.70518 * 15 14 4 18 18 C 1.53024 * 109.99318 * 191.00117 * 17 15 14 19 19 S 1.81743 * 108.81453 * 296.93646 * 18 17 15 20 20 C 1.81744 * 102.22178 * 53.27080 * 19 18 17 21 21 C 1.52590 * 109.22425 * 174.89637 * 15 14 4 22 22 H 1.07994 * 119.99891 * 180.02562 * 1 2 3 23 23 H 1.08003 * 119.99982 * 0.02562 * 1 2 3 24 24 H 1.07993 * 120.00137 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.47317 * 4.34988 * 3 2 1 26 26 H 1.09000 * 109.46950 * 244.35071 * 3 2 1 27 27 H 1.08991 * 109.47606 * 48.42530 * 5 4 3 28 28 H 1.09002 * 109.46841 * 168.43149 * 5 4 3 29 29 H 0.97001 * 120.00259 * 180.02562 * 9 8 6 30 30 H 1.09001 * 109.47403 * 317.38338 * 14 4 3 31 31 H 1.08995 * 109.47207 * 197.37715 * 14 4 3 32 32 H 0.96699 * 114.00023 * 179.97438 * 16 15 14 33 33 H 1.08996 * 109.39171 * 311.09681 * 17 15 14 34 34 H 1.08994 * 109.39084 * 70.80458 * 17 15 14 35 35 H 1.09006 * 109.58965 * 177.13613 * 18 17 15 36 36 H 1.09005 * 109.69572 * 56.80347 * 18 17 15 37 37 H 1.09006 * 109.57768 * 186.92597 * 20 19 18 38 38 H 1.08994 * 109.68771 * 66.60473 * 20 19 18 39 39 H 1.08996 * 109.38600 * 289.19542 * 21 15 14 40 40 H 1.08998 * 109.38624 * 48.89959 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9852 1.3385 1.1435 5 6 2.2520 1.2507 2.4133 6 6 1.5179 2.5436 2.6599 7 1 1.5242 3.3198 1.9091 8 6 0.8383 2.7353 3.8442 9 7 0.8309 1.7902 4.7586 10 14 -0.0710 4.3381 4.1502 11 1 0.0911 5.2313 2.9749 12 1 -1.5135 4.0562 4.3619 13 1 0.4861 5.0008 5.3566 14 6 3.9900 0.2719 1.0409 15 6 5.0596 0.6749 0.0237 16 8 4.4692 0.7486 -1.2755 17 6 5.6199 2.0434 0.3995 18 6 6.4842 2.5860 -0.7408 19 16 7.9041 1.4768 -0.9789 20 6 7.0999 -0.1411 -1.1754 21 6 6.1655 -0.3765 0.0142 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 1.8500 -0.9352 0.0004 25 1 1.3577 2.1322 0.0779 26 1 2.6304 1.3974 -0.9264 27 1 1.5362 0.4302 2.3637 28 1 2.9547 1.0710 3.2269 29 1 0.3525 1.9249 5.5916 30 1 3.5089 -0.6506 0.7159 31 1 4.4548 0.1158 2.0144 32 1 5.0879 0.9998 -1.9749 33 1 4.7966 2.7324 0.5874 34 1 6.2257 1.9513 1.3009 35 1 6.8394 3.5847 -0.4869 36 1 5.8969 2.6296 -1.6581 37 1 7.8574 -0.9243 -1.2053 38 1 6.5238 -0.1548 -2.1006 39 1 6.7356 -0.3102 0.9409 40 1 5.7209 -1.3685 -0.0654 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595501122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:53 Heat of formation + Delta-G solvation = -43.977967 kcal Electronic energy + Delta-G solvation = -19981.004667 eV Core-core repulsion = 17114.690779 eV Total energy + Delta-G solvation = -2866.313888 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.65423 -38.16628 -34.81805 -34.34392 -33.52017 -32.51976 -30.42787 -28.57725 -26.49106 -24.65432 -24.13099 -22.47386 -21.15775 -20.19244 -18.54352 -18.33256 -17.36616 -16.82881 -16.61171 -16.07973 -16.00325 -15.56667 -15.10465 -14.72584 -14.38910 -14.20187 -13.97950 -13.87702 -13.60809 -13.19769 -12.99044 -12.73598 -12.68699 -12.63217 -12.50453 -12.28095 -12.11666 -11.96247 -11.82883 -11.75672 -11.16170 -10.65982 -10.59000 -10.57732 -10.09991 -8.88122 -8.66163 -8.16218 -6.24206 0.81111 1.39959 1.41185 1.47809 1.53881 1.57797 2.41758 3.15612 3.22874 3.33278 3.67076 3.75343 3.96745 4.04364 4.13055 4.21831 4.29785 4.36688 4.43563 4.56531 4.69028 4.75249 4.78895 4.85860 4.99187 5.00297 5.06114 5.16632 5.25920 5.33285 5.43182 5.49105 5.69213 5.76268 5.93355 6.12876 6.46115 6.67137 6.79599 6.92010 7.44430 8.94536 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.023072 B = 0.005315 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.284349 B = 5267.183966 C = 5856.065857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.179 4.179 3 C 0.089 3.911 4 N -0.521 5.521 5 C 0.206 3.794 6 C -0.509 4.509 7 H 0.058 0.942 8 C 0.003 3.997 9 N -0.935 5.935 10 Si 0.961 3.039 11 H -0.265 1.265 12 H -0.281 1.281 13 H -0.280 1.280 14 C 0.062 3.938 15 C 0.148 3.852 16 O -0.554 6.554 17 C -0.135 4.135 18 C -0.072 4.072 19 S -0.299 6.299 20 C -0.071 4.071 21 C -0.143 4.143 22 H 0.103 0.897 23 H 0.088 0.912 24 H 0.103 0.897 25 H 0.051 0.949 26 H 0.109 0.891 27 H -0.029 1.029 28 H -0.001 1.001 29 H 0.262 0.738 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.372 0.628 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.122 0.878 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.918 -3.566 -13.400 17.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.199 4.199 3 C -0.038 4.038 4 N -0.243 5.243 5 C 0.080 3.920 6 C -0.548 4.548 7 H 0.076 0.924 8 C -0.195 4.195 9 N -0.576 5.576 10 Si 0.787 3.213 11 H -0.189 1.189 12 H -0.207 1.207 13 H -0.206 1.206 14 C -0.067 4.067 15 C 0.107 3.893 16 O -0.364 6.364 17 C -0.175 4.175 18 C -0.220 4.220 19 S -0.074 6.074 20 C -0.219 4.219 21 C -0.182 4.182 22 H 0.121 0.879 23 H 0.106 0.894 24 H 0.121 0.879 25 H 0.069 0.931 26 H 0.126 0.874 27 H -0.011 1.011 28 H 0.017 0.983 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.223 0.777 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.140 0.860 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.695 -3.045 -12.936 17.703 hybrid contribution -1.876 -0.310 0.630 2.003 sum 9.820 -3.355 -12.306 16.097 Atomic orbital electron populations 1.23831 0.96160 1.01594 1.01337 1.23582 0.96740 1.00038 0.99536 1.21405 0.94277 0.93144 0.94974 1.62246 1.15161 1.44252 1.02613 1.19416 0.91297 0.95111 0.86180 1.21428 1.30107 1.01617 1.01606 0.92398 1.25803 0.97676 1.00091 0.95897 1.70082 1.44322 1.35076 1.08153 0.85452 0.78032 0.79638 0.78217 1.18861 1.20704 1.20564 1.22132 0.93457 0.93396 0.97678 1.20983 0.91467 0.93700 0.83166 1.86619 1.40576 1.92255 1.16906 1.22141 0.99662 0.97905 0.97771 1.23464 0.95874 1.00608 1.02043 1.86983 1.18033 1.06747 1.95589 1.23456 1.01674 0.95602 1.01163 1.22303 0.96449 1.00208 0.99263 0.87880 0.89396 0.87925 0.93068 0.87356 1.01087 0.98303 0.92938 0.94276 0.91346 0.77702 0.89953 0.91402 0.87211 0.88503 0.85967 0.88232 0.90106 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.83 14.32 67.78 0.97 -5.86 16 2 C -0.18 -6.60 7.48 25.64 0.19 -6.40 16 3 C 0.09 3.44 5.45 85.56 0.47 3.90 16 4 N -0.52 -21.53 3.33 -905.35 -3.02 -24.55 16 5 C 0.21 10.77 4.59 85.56 0.39 11.16 16 6 C -0.51 -28.62 8.65 25.60 0.22 -28.40 16 7 H 0.06 3.23 7.32 -2.91 -0.02 3.21 16 8 C 0.00 0.16 5.46 84.66 0.46 0.62 16 9 N -0.94 -56.36 13.29 21.45 0.28 -56.07 16 10 Si 0.96 44.60 29.54 68.60 2.03 46.63 16 11 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 13 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 14 C 0.06 2.11 4.16 86.31 0.36 2.47 16 15 C 0.15 3.79 0.84 -11.07 -0.01 3.78 16 16 O -0.55 -13.45 9.68 -148.98 -1.44 -14.89 16 17 C -0.14 -3.61 4.79 30.46 0.15 -3.46 16 18 C -0.07 -1.50 6.05 71.99 0.44 -1.06 16 19 S -0.30 -6.07 22.33 -56.49 -1.26 -7.33 16 20 C -0.07 -1.15 6.05 72.01 0.44 -0.71 16 21 C -0.14 -2.87 4.86 30.49 0.15 -2.72 16 22 H 0.10 3.21 8.06 -2.91 -0.02 3.19 16 23 H 0.09 3.25 7.84 -2.91 -0.02 3.22 16 24 H 0.10 3.57 6.60 -2.91 -0.02 3.56 16 25 H 0.05 2.20 6.77 -2.39 -0.02 2.18 16 26 H 0.11 3.75 5.38 -2.39 -0.01 3.74 16 27 H -0.03 -1.62 6.78 -2.39 -0.02 -1.63 16 28 H 0.00 -0.07 7.68 -2.39 -0.02 -0.08 16 29 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.04 1.33 5.94 -2.39 -0.01 1.31 16 31 H 0.07 2.44 7.62 -2.39 -0.02 2.42 16 32 H 0.37 6.70 5.15 -74.06 -0.38 6.32 16 33 H 0.08 2.73 7.04 -2.39 -0.02 2.71 16 34 H 0.07 1.91 8.06 -2.39 -0.02 1.89 16 35 H 0.11 2.20 8.14 -2.38 -0.02 2.19 16 36 H 0.10 1.77 6.56 -2.38 -0.02 1.75 16 37 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.10 1.36 6.56 -2.39 -0.02 1.35 16 39 H 0.08 1.71 8.06 -2.39 -0.02 1.69 16 40 H 0.09 1.66 8.09 -2.39 -0.02 1.64 16 Total: -1.00 -63.16 316.26 1.45 -61.71 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.64 Total: 21.19 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 4.22 Total: -26.68 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -2.73 Total: -80.62 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -1.44 Total: -14.89 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: -6.07 SS G_CDS: -1.26 Total: -7.33 kcal Total: -63.16 1.45 -61.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595501122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.728 kcal (2) G-P(sol) polarization free energy of solvation -63.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds