Wall clock time and date at job start Mon Mar 30 2020 05:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.49330 * 108.57156 * 2 1 4 4 O 1.45711 * 104.89735 * 76.42849 * 3 2 1 5 5 C 1.46053 * 108.93739 * 6.61782 * 4 3 2 6 6 C 1.51274 * 102.68964 * 26.02927 * 5 4 3 7 7 H 1.08997 * 111.26346 * 71.56840 * 6 5 4 8 8 C 1.51270 * 124.52873 * 210.18908 * 6 5 4 9 9 N 1.50162 * 102.31025 * 150.10411 * 8 6 5 10 10 C 1.46899 * 111.00224 * 212.47685 * 9 8 6 11 11 C 1.52996 * 109.47435 * 289.56411 * 10 9 8 12 12 C 1.52997 * 109.47302 * 180.02562 * 11 10 9 13 13 S 1.80999 * 109.47148 * 179.97438 * 12 11 10 14 14 C 1.76205 * 100.00033 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00171 * 0.02562 * 14 13 12 16 16 C 1.38801 * 119.99968 * 180.02562 * 14 13 12 17 17 N 1.31637 * 120.00014 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99980 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46930 * 60.00154 * 18 16 14 20 20 H 1.48495 * 109.47089 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47141 * 300.00356 * 18 16 14 22 22 C 1.49295 * 108.58130 * 214.31208 * 2 1 3 23 23 H 1.08996 * 109.47737 * 198.28179 * 1 2 3 24 24 H 1.09002 * 109.47333 * 318.28246 * 1 2 3 25 25 H 1.09008 * 109.46891 * 78.28214 * 1 2 3 26 26 H 1.09003 * 110.34925 * 195.28135 * 3 2 1 27 27 H 1.08989 * 110.35647 * 317.56934 * 3 2 1 28 28 H 1.08998 * 110.76460 * 144.33209 * 5 4 3 29 29 H 1.09001 * 110.76344 * 267.54308 * 5 4 3 30 30 H 1.09003 * 110.83866 * 31.90133 * 8 6 5 31 31 H 1.09000 * 110.83846 * 268.30882 * 8 6 5 32 32 H 1.09005 * 109.47235 * 169.55952 * 10 9 8 33 33 H 1.08996 * 109.46634 * 49.56415 * 10 9 8 34 34 H 1.08996 * 109.47419 * 59.99296 * 11 10 9 35 35 H 1.09009 * 109.46976 * 299.99846 * 11 10 9 36 36 H 1.09002 * 109.47582 * 60.00026 * 12 11 10 37 37 H 1.09001 * 109.46805 * 299.99217 * 12 11 10 38 38 H 0.96996 * 119.99720 * 180.02562 * 17 16 14 39 39 H 1.08999 * 110.42812 * 165.20865 * 22 2 1 40 40 H 1.09005 * 110.42740 * 42.72721 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0056 1.4155 0.0000 4 8 1.8117 1.8759 1.3688 5 6 1.3945 0.7456 2.1944 6 6 1.9762 -0.4388 1.4547 7 1 3.0610 -0.4734 1.5548 8 6 1.3698 -1.8246 1.4433 9 7 1.7935 -2.3485 0.1014 10 6 0.7811 -3.2573 -0.4526 11 6 0.7691 -4.5588 0.3516 12 6 -0.2849 -5.5055 -0.2258 13 16 -0.2984 -7.0455 0.7253 14 6 -1.5647 -7.9225 -0.1305 15 1 -2.0639 -7.4655 -0.9721 16 6 -1.9206 -9.2007 0.2771 17 7 -1.3125 -9.7575 1.3033 18 14 -3.2625 -10.1307 -0.6306 19 1 -2.8699 -10.3038 -2.0523 20 1 -3.4515 -11.4637 -0.0040 21 1 -4.5323 -9.3642 -0.5575 22 6 2.0057 -1.1689 -0.7977 23 1 -0.3634 -0.9757 0.3223 24 1 -0.3634 0.7671 0.6839 25 1 -0.3633 0.2087 -1.0063 26 1 3.0608 1.4609 -0.2694 27 1 1.4114 2.0151 -0.6894 28 1 1.8177 0.8216 3.1960 29 1 0.3073 0.6807 2.2397 30 1 0.2833 -1.7731 1.5140 31 1 1.7831 -2.4353 2.2461 32 1 1.0195 -3.4756 -1.4937 33 1 -0.2001 -2.7861 -0.3958 34 1 0.5308 -4.3405 1.3926 35 1 1.7505 -5.0300 0.2948 36 1 -0.0461 -5.7239 -1.2667 37 1 -1.2663 -5.0346 -0.1692 38 1 -1.5610 -10.6509 1.5878 39 1 3.0631 -1.0598 -1.0390 40 1 1.4157 -1.2735 -1.7083 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595755825.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:57 Heat of formation + Delta-G solvation = -39.721494 kcal Electronic energy + Delta-G solvation = -18900.957766 eV Core-core repulsion = 16034.828452 eV Total energy + Delta-G solvation = -2866.129313 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.59969 -38.39661 -35.34877 -34.59972 -32.41267 -31.78247 -28.56388 -27.88510 -27.71990 -26.97690 -24.03945 -22.19107 -21.34864 -20.26478 -19.54069 -17.77451 -16.97582 -16.89682 -16.86709 -16.46991 -15.98383 -15.88256 -15.44015 -14.88245 -14.68894 -14.54354 -13.68324 -13.63853 -13.43275 -13.32756 -13.02525 -12.98408 -12.86533 -12.71233 -12.60379 -12.35945 -12.28938 -12.02693 -11.72191 -11.50819 -11.31224 -11.14666 -11.11778 -10.57254 -10.31961 -9.34901 -8.66918 -8.37388 -6.13908 1.31036 1.40619 1.47532 1.74072 2.28372 2.65278 2.72172 2.92150 2.96699 3.32671 3.53078 3.87656 3.97152 4.02031 4.10367 4.12465 4.25498 4.29737 4.37350 4.43803 4.49092 4.56877 4.61852 4.70600 4.74116 4.78650 4.80519 4.86221 4.92187 4.98760 5.04899 5.07983 5.19254 5.28952 5.33216 5.39032 5.68041 5.80702 5.99128 6.17602 7.04571 8.71825 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.048678 B = 0.003084 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.072468 B = 9078.132281 C = 9196.859352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.134 4.134 3 C 0.082 3.918 4 O -0.408 6.408 5 C 0.064 3.936 6 C -0.140 4.140 7 H 0.094 0.906 8 C 0.053 3.947 9 N -0.530 5.530 10 C 0.063 3.937 11 C -0.080 4.080 12 C -0.087 4.087 13 S -0.199 6.199 14 C -0.540 4.540 15 H 0.073 0.927 16 C 0.015 3.985 17 N -0.908 5.908 18 Si 0.994 3.006 19 H -0.264 1.264 20 H -0.275 1.275 21 H -0.264 1.264 22 C 0.072 3.928 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.272 0.728 39 H 0.089 0.911 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.067 21.930 -3.221 22.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.136 4.136 3 C 0.005 3.995 4 O -0.328 6.328 5 C -0.012 4.012 6 C -0.159 4.159 7 H 0.113 0.887 8 C -0.074 4.074 9 N -0.254 5.254 10 C -0.067 4.067 11 C -0.118 4.118 12 C -0.237 4.237 13 S 0.030 5.970 14 C -0.688 4.688 15 H 0.091 0.909 16 C -0.190 4.190 17 N -0.544 5.544 18 Si 0.816 3.184 19 H -0.189 1.189 20 H -0.200 1.200 21 H -0.189 1.189 22 C -0.055 4.055 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.199 21.344 -2.101 22.325 hybrid contribution -2.200 -0.352 -1.436 2.651 sum 3.998 20.992 -3.537 21.660 Atomic orbital electron populations 1.22512 0.93861 1.02716 1.02991 1.22073 0.97671 0.96138 0.97681 1.22010 1.01571 0.91987 0.83909 1.89349 1.89867 1.33700 1.19893 1.22797 0.99757 0.83939 0.94746 1.23206 1.01863 0.94787 0.96040 0.88742 1.22547 0.99020 0.93693 0.92144 1.65254 1.43054 1.14843 1.02235 1.22240 0.93522 0.92124 0.98791 1.21095 0.97639 0.93840 0.99273 1.23157 1.01532 0.97394 1.01579 1.84663 1.51937 1.13932 1.46469 1.23021 1.23020 1.03899 1.18827 0.90892 1.26080 0.99456 0.97463 0.95992 1.70154 1.42143 1.15906 1.26217 0.85070 0.77826 0.77148 0.78406 1.18899 1.19981 1.18872 1.21840 1.02349 0.86528 0.94751 0.92108 0.91440 0.91512 0.90296 0.89340 0.88335 0.90618 0.91847 0.90098 0.90112 0.93974 0.92103 0.91760 0.91880 0.92047 0.91952 0.89320 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 7.37 71.98 0.53 -2.08 16 2 C -0.13 -2.10 1.57 -52.62 -0.08 -2.19 16 3 C 0.08 1.23 6.97 70.81 0.49 1.72 16 4 O -0.41 -7.93 11.49 -148.98 -1.71 -9.64 16 5 C 0.06 1.04 7.02 71.42 0.50 1.54 16 6 C -0.14 -2.39 3.22 -10.01 -0.03 -2.42 16 7 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 8 C 0.05 1.06 5.18 85.10 0.44 1.50 16 9 N -0.53 -11.53 5.26 -889.40 -4.68 -16.21 16 10 C 0.06 1.54 4.54 86.30 0.39 1.93 16 11 C -0.08 -2.53 5.28 30.59 0.16 -2.37 16 12 C -0.09 -3.47 5.67 71.98 0.41 -3.06 16 13 S -0.20 -10.64 21.44 -56.49 -1.21 -11.85 16 14 C -0.54 -31.32 9.50 67.95 0.65 -30.67 16 15 H 0.07 4.05 7.80 -2.91 -0.02 4.03 16 16 C 0.01 0.86 5.49 84.86 0.47 1.32 16 17 N -0.91 -55.11 13.22 21.65 0.29 -54.82 16 18 Si 0.99 43.87 29.55 68.60 2.03 45.90 16 19 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 21 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 22 C 0.07 1.23 6.08 84.55 0.51 1.74 16 23 H 0.06 1.10 3.75 -2.39 -0.01 1.09 16 24 H 0.07 1.07 5.76 -2.39 -0.01 1.05 16 25 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.09 1.14 7.98 -2.39 -0.02 1.12 16 28 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.08 1.17 6.12 -2.39 -0.01 1.15 16 30 H 0.06 1.29 5.57 -2.39 -0.01 1.27 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.08 1.89 7.99 -2.38 -0.02 1.87 16 33 H 0.04 0.98 6.50 -2.39 -0.02 0.97 16 34 H 0.06 1.98 7.54 -2.39 -0.02 1.96 16 35 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.27 15.31 8.31 -92.71 -0.77 14.53 16 39 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.07 1.18 7.43 -2.38 -0.02 1.16 16 Total: -1.00 -66.32 318.20 0.17 -66.15 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 1.01 Total: 13.49 kcal Atomic # 6 Polarization: -37.47 SS G_CDS: 4.44 Total: -33.03 kcal Atomic # 7 Polarization: -66.63 SS G_CDS: -4.39 Total: -71.02 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -1.71 Total: -9.64 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -10.64 SS G_CDS: -1.21 Total: -11.85 kcal Total: -66.32 0.17 -66.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595755825.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.433 kcal (2) G-P(sol) polarization free energy of solvation -66.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds