Wall clock time and date at job start Mon Mar 30 2020 04:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86800 * 119.99766 * 2 1 4 4 H 1.48495 * 109.47244 * 270.00257 * 3 2 1 5 5 H 1.48502 * 109.47216 * 30.00266 * 3 2 1 6 6 H 1.48499 * 109.46883 * 150.00048 * 3 2 1 7 7 C 1.38795 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99687 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99998 * 180.02562 * 7 2 1 10 10 C 1.80997 * 99.99880 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47261 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47469 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47492 * 180.02562 * 12 11 10 14 14 C 1.46894 * 111.00263 * 180.02562 * 13 12 11 15 15 H 1.08993 * 112.95063 * 26.89996 * 14 13 12 16 16 C 1.53954 * 113.65966 * 255.49254 * 14 13 12 17 17 C 1.53957 * 87.29472 * 220.79298 * 16 14 13 18 18 H 1.09003 * 113.65944 * 139.20791 * 17 16 14 19 19 O 1.42900 * 113.66128 * 270.25992 * 17 16 14 20 20 C 1.52904 * 86.78105 * 24.73709 * 17 16 14 21 21 C 1.52910 * 121.13709 * 209.38125 * 20 17 16 22 22 C 1.53947 * 86.78382 * 209.38040 * 21 20 17 23 23 C 1.52905 * 121.14213 * 100.82198 * 20 17 16 24 24 H 0.96992 * 120.00084 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47536 * 60.00070 * 10 9 7 26 26 H 1.08998 * 109.47320 * 299.99495 * 10 9 7 27 27 H 1.08999 * 109.47126 * 59.99778 * 11 10 9 28 28 H 1.09002 * 109.47032 * 299.99720 * 11 10 9 29 29 H 1.08999 * 109.46813 * 59.99972 * 12 11 10 30 30 H 1.08998 * 109.47531 * 299.99936 * 12 11 10 31 31 H 1.00907 * 111.00233 * 303.95704 * 13 12 11 32 32 H 1.08998 * 113.57647 * 106.19055 * 16 14 13 33 33 H 1.09000 * 113.58060 * 335.39521 * 16 14 13 34 34 H 0.96699 * 114.00303 * 280.49386 * 19 17 16 35 35 H 1.09003 * 113.66021 * 323.85551 * 21 20 17 36 36 H 1.09001 * 113.66716 * 94.90405 * 21 20 17 37 37 H 1.09003 * 113.57959 * 270.12744 * 22 21 20 38 38 H 1.08997 * 113.65032 * 139.34996 * 22 21 20 39 39 H 1.09004 * 113.66112 * 265.09171 * 23 20 17 40 40 H 1.09000 * 113.66163 * 36.04353 * 23 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7724 -1.2019 0.0001 10 6 4.0867 -2.9844 -0.0001 11 6 5.5958 -3.2362 -0.0002 12 6 5.8616 -4.7429 0.0002 13 7 7.3105 -4.9847 0.0007 14 6 7.6041 -6.4240 0.0005 15 1 6.8123 -7.0192 -0.4541 16 6 8.0732 -6.9590 1.3657 17 6 9.1029 -7.8075 0.5975 18 1 10.0823 -7.8446 1.0745 19 8 8.6168 -9.0976 0.2216 20 6 9.0022 -6.7651 -0.5167 21 6 9.2328 -7.1464 -1.9794 22 6 9.7292 -5.7040 -2.1868 23 6 10.0687 -5.6825 -0.6855 24 1 -0.4850 0.8400 -0.0004 25 1 3.6441 -3.4313 -0.8904 26 1 3.6435 -3.4317 0.8896 27 1 6.0388 -2.7893 0.8897 28 1 6.0387 -2.7891 -0.8902 29 1 5.4185 -5.1902 -0.8896 30 1 5.4188 -5.1898 0.8903 31 1 7.7541 -4.5253 -0.7807 32 1 7.3195 -7.5518 1.8840 33 1 8.5237 -6.1967 2.0014 34 1 8.6314 -9.7474 0.9376 35 1 10.0079 -7.9001 -2.1180 36 1 8.3154 -7.3756 -2.5217 37 1 8.9391 -5.0067 -2.4653 38 1 10.6041 -5.6314 -2.8328 39 1 9.8191 -4.7421 -0.1940 40 1 11.0786 -6.0242 -0.4588 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595779954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:16 Heat of formation + Delta-G solvation = -42.686255 kcal Electronic energy + Delta-G solvation = -18414.617372 eV Core-core repulsion = 15548.359496 eV Total energy + Delta-G solvation = -2866.257875 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.76280 -37.32926 -37.15671 -34.70643 -34.60922 -32.34685 -28.02464 -26.75650 -26.67999 -25.61833 -23.85124 -22.50746 -21.74617 -19.66079 -19.09262 -17.98484 -17.21984 -17.11630 -16.64684 -16.60737 -16.25955 -15.90572 -15.05671 -14.87449 -14.76245 -14.26389 -13.80353 -13.45400 -13.35425 -13.29701 -13.11907 -13.07314 -13.00001 -12.69130 -12.43942 -12.20300 -12.04941 -11.85280 -11.67111 -11.31887 -11.23637 -11.17338 -10.74656 -10.57877 -10.49169 -9.41776 -9.00273 -8.53107 -6.24688 1.11910 1.31796 1.47754 1.73260 2.24396 2.66953 2.84885 2.96149 3.23600 3.40652 3.60817 3.82358 3.85179 3.95592 3.96494 4.07530 4.24438 4.26039 4.42997 4.45858 4.52478 4.59304 4.72173 4.78621 4.82277 4.87239 4.98425 5.05538 5.08967 5.12540 5.17556 5.22405 5.31817 5.45579 5.54783 5.68360 6.07634 6.08526 6.41090 6.90764 6.91424 8.60235 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.038162 B = 0.003052 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.540740 B = 9170.640628 C = 9519.934222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.037 3.963 3 Si 0.928 3.072 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.228 1.228 7 C -0.525 4.525 8 H 0.048 0.952 9 S -0.216 6.216 10 C -0.071 4.071 11 C -0.084 4.084 12 C 0.073 3.927 13 N -0.673 5.673 14 C 0.084 3.916 15 H 0.059 0.941 16 C -0.152 4.152 17 C 0.095 3.905 18 H 0.086 0.914 19 O -0.566 6.566 20 C -0.100 4.100 21 C -0.122 4.122 22 C -0.141 4.141 23 C -0.104 4.104 24 H 0.277 0.723 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.028 0.972 30 H 0.069 0.931 31 H 0.345 0.655 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.396 0.604 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.981 -15.404 0.024 28.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.168 4.168 3 Si 0.748 3.252 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.151 1.151 7 C -0.672 4.672 8 H 0.067 0.933 9 S 0.012 5.988 10 C -0.220 4.220 11 C -0.123 4.123 12 C -0.058 4.058 13 N -0.305 5.305 14 C -0.026 4.026 15 H 0.077 0.923 16 C -0.191 4.191 17 C 0.036 3.964 18 H 0.104 0.896 19 O -0.375 6.375 20 C -0.101 4.101 21 C -0.160 4.160 22 C -0.178 4.178 23 C -0.141 4.141 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.165 0.835 32 H 0.086 0.914 33 H 0.115 0.885 34 H 0.247 0.753 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 24.495 -14.068 0.136 28.248 hybrid contribution -1.930 -0.993 -0.425 2.211 sum 22.565 -15.061 -0.289 27.131 Atomic orbital electron populations 1.70043 1.07719 1.29176 1.49228 1.25817 0.95443 1.02876 0.92655 0.85684 0.80769 0.78426 0.80283 1.18513 1.18672 1.15130 1.22359 0.90223 0.96223 1.58424 0.93347 1.83799 1.07359 1.10093 1.97560 1.23079 1.00408 0.95163 1.03328 1.21170 0.91557 0.96159 1.03407 1.21850 0.88753 0.94823 1.00423 1.60654 1.09619 1.10344 1.49854 1.22663 0.94660 0.87841 0.97458 0.92333 1.23709 0.99410 0.99611 0.96351 1.22478 0.96143 0.82536 0.95288 0.89589 1.86419 1.87674 1.21171 1.42187 1.22873 0.95819 0.96556 0.94838 1.22636 1.00985 0.97389 0.94961 1.22890 1.01558 0.96425 0.96962 1.22574 0.97657 0.97806 0.96073 0.91358 0.91929 0.91727 0.90651 0.91109 0.95359 0.91243 0.83488 0.91449 0.88509 0.75348 0.89411 0.93037 0.90747 0.90124 0.90243 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.61 13.97 21.65 0.30 -57.31 16 2 C 0.04 2.18 5.50 84.86 0.47 2.65 16 3 Si 0.93 44.51 27.74 68.60 1.90 46.42 16 4 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.23 -10.52 6.74 99.48 0.67 -9.85 16 7 C -0.52 -31.52 10.04 67.95 0.68 -30.84 16 8 H 0.05 3.17 8.03 -2.91 -0.02 3.15 16 9 S -0.22 -10.55 19.41 -56.49 -1.10 -11.65 16 10 C -0.07 -2.76 5.67 71.98 0.41 -2.35 16 11 C -0.08 -2.49 5.48 30.59 0.17 -2.33 16 12 C 0.07 1.83 5.55 86.30 0.48 2.31 16 13 N -0.67 -14.42 6.01 -490.09 -2.95 -17.37 16 14 C 0.08 1.67 3.94 45.21 0.18 1.85 16 15 H 0.06 1.38 7.90 -2.39 -0.02 1.36 16 16 C -0.15 -2.61 7.72 31.23 0.24 -2.37 16 17 C 0.10 1.41 5.07 30.89 0.16 1.56 16 18 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 19 O -0.57 -8.82 13.40 -148.98 -2.00 -10.81 16 20 C -0.10 -1.64 0.94 -52.31 -0.05 -1.69 16 21 C -0.12 -2.02 7.62 30.88 0.24 -1.79 16 22 C -0.14 -1.99 7.80 31.23 0.24 -1.75 16 23 C -0.10 -1.42 7.24 30.88 0.22 -1.19 16 24 H 0.28 15.87 8.31 -92.71 -0.77 15.10 16 25 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.06 2.56 8.14 -2.40 -0.02 2.54 16 27 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.03 0.72 8.13 -2.39 -0.02 0.70 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.34 6.90 6.48 -89.69 -0.58 6.32 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.40 2.72 9.12 -74.06 -0.68 2.04 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 1.13 7.28 -2.39 -0.02 1.11 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 1.19 7.29 -2.38 -0.02 1.17 16 40 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -68.33 334.28 -0.67 -69.00 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -0.27 Total: 17.65 kcal Atomic # 6 Polarization: -39.37 SS G_CDS: 3.43 Total: -35.94 kcal Atomic # 7 Polarization: -72.03 SS G_CDS: -2.65 Total: -74.68 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -2.00 Total: -10.81 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.90 Total: 46.42 kcal Atomic # 16 Polarization: -10.55 SS G_CDS: -1.10 Total: -11.65 kcal Total: -68.33 -0.67 -69.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595779954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.315 kcal (2) G-P(sol) polarization free energy of solvation -68.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds