Wall clock time and date at job start Mon Mar 30 2020 04:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 120.00007 * 2 1 4 4 H 1.48502 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47665 * 300.00513 * 3 2 1 6 6 H 1.48503 * 109.46798 * 60.00899 * 3 2 1 7 7 C 1.38802 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99804 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00251 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00092 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47152 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46769 * 180.02562 * 12 11 10 14 14 C 1.46906 * 110.99793 * 180.02562 * 13 12 11 15 15 H 1.08998 * 112.88635 * 26.84597 * 14 13 12 16 16 C 1.53946 * 113.66253 * 255.49621 * 14 13 12 17 17 C 1.53950 * 87.29661 * 270.26467 * 16 14 13 18 18 H 1.09000 * 113.66373 * 220.79560 * 17 16 14 19 19 O 1.42902 * 113.66413 * 89.73631 * 17 16 14 20 20 C 1.52909 * 113.66256 * 158.31052 * 14 13 12 21 21 C 1.52913 * 121.13828 * 323.85376 * 20 14 13 22 22 C 1.53957 * 86.78145 * 209.37569 * 21 20 14 23 23 C 1.52908 * 121.13830 * 215.29195 * 20 14 13 24 24 H 0.96996 * 119.99880 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46718 * 59.99828 * 10 9 7 26 26 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 27 27 H 1.09001 * 109.46652 * 60.00210 * 11 10 9 28 28 H 1.08992 * 109.47514 * 300.00299 * 11 10 9 29 29 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 30 30 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 31 31 H 1.00898 * 110.99877 * 56.04956 * 13 12 11 32 32 H 1.09007 * 113.58178 * 24.86994 * 16 14 13 33 33 H 1.09005 * 113.58067 * 155.58288 * 16 14 13 34 34 H 0.96699 * 113.99909 * 79.50549 * 19 17 16 35 35 H 1.09000 * 113.66389 * 323.84639 * 21 20 14 36 36 H 1.08996 * 113.66611 * 94.90403 * 21 20 14 37 37 H 1.09002 * 113.58140 * 270.13461 * 22 21 20 38 38 H 1.08997 * 113.64981 * 139.34732 * 22 21 20 39 39 H 1.09003 * 113.65626 * 265.09198 * 23 20 14 40 40 H 1.08991 * 113.66484 * 36.14732 * 23 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8917 2.3963 1.2127 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9792 -5.3243 0.0001 12 6 3.1513 -6.3078 -0.0005 13 7 2.6361 -7.6835 -0.0005 14 6 3.7359 -8.6575 -0.0005 15 1 4.6472 -8.2678 0.4529 16 6 3.9643 -9.3315 -1.3656 17 6 2.9611 -10.4104 -0.9189 18 1 3.2539 -11.4225 -1.1983 19 8 1.6059 -10.1089 -1.2572 20 6 3.3325 -10.0386 0.5171 21 6 2.3271 -10.1924 1.6588 22 6 3.0673 -11.4933 2.0196 23 6 4.3058 -10.8940 1.3289 24 1 -0.4850 0.8400 0.0004 25 1 3.1244 -3.7314 0.8895 26 1 3.1245 -3.7314 -0.8905 27 1 1.3704 -5.4846 -0.8897 28 1 1.3709 -5.4841 0.8902 29 1 3.7594 -6.1478 -0.8909 30 1 3.7605 -6.1476 0.8891 31 1 2.0163 -7.8375 -0.7817 32 1 3.6168 -8.7357 -2.2097 33 1 4.9785 -9.7070 -1.5023 34 1 1.3798 -10.2952 -2.1788 35 1 2.4083 -9.4172 2.4207 36 1 1.3028 -10.3511 1.3215 37 1 2.6708 -12.3748 1.5157 38 1 3.1948 -11.6408 3.0920 39 1 4.8622 -11.6132 0.7277 40 1 4.9431 -10.3160 1.9979 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595779955.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:19 Heat of formation + Delta-G solvation = -19.983467 kcal Electronic energy + Delta-G solvation = -18421.607749 eV Core-core repulsion = 15556.334340 eV Total energy + Delta-G solvation = -2865.273408 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.96461 -36.63351 -35.98320 -33.68075 -32.39984 -30.81723 -25.99764 -25.67489 -25.13136 -24.73848 -23.41475 -21.07020 -20.84348 -18.24262 -17.48642 -17.38431 -16.08597 -15.66251 -15.28623 -15.17530 -14.77981 -14.36582 -13.84622 -13.61021 -13.42654 -12.88703 -12.74011 -12.45378 -12.21425 -12.09561 -11.85662 -11.58262 -11.39386 -11.27806 -11.06305 -10.75843 -10.70820 -10.54822 -10.38525 -10.33827 -10.06748 -9.73150 -9.42692 -9.03626 -8.24880 -8.22957 -6.48492 -6.19731 -3.89376 3.22792 3.24216 3.31824 3.52121 3.64652 4.04029 4.25726 4.35507 4.47033 4.59650 4.67175 4.76967 4.81132 5.13835 5.16124 5.24800 5.35013 5.45293 5.45597 5.49820 5.52430 5.63154 5.66377 5.68476 5.71226 5.80437 5.86587 5.99705 6.15558 6.20991 6.26645 6.35737 6.40141 6.67286 6.81627 7.19331 7.42553 7.58028 7.63833 8.40037 9.26540 10.88551 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.041161 B = 0.002888 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.090148 B = 9693.451222 C = 9739.863219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.515 4.515 8 H 0.072 0.928 9 S -0.133 6.133 10 C -0.111 4.111 11 C -0.095 4.095 12 C 0.064 3.936 13 N -0.661 5.661 14 C 0.089 3.911 15 H 0.081 0.919 16 C -0.205 4.205 17 C 0.106 3.894 18 H 0.062 0.938 19 O -0.539 6.539 20 C -0.093 4.093 21 C -0.101 4.101 22 C -0.146 4.146 23 C -0.109 4.109 24 H 0.266 0.734 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.350 0.650 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.378 0.622 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.284 -23.377 -1.202 24.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.139 4.139 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.663 4.663 8 H 0.090 0.910 9 S 0.095 5.905 10 C -0.261 4.261 11 C -0.133 4.133 12 C -0.066 4.066 13 N -0.292 5.292 14 C -0.023 4.023 15 H 0.099 0.901 16 C -0.244 4.244 17 C 0.047 3.953 18 H 0.079 0.921 19 O -0.344 6.344 20 C -0.094 4.094 21 C -0.139 4.139 22 C -0.184 4.184 23 C -0.147 4.147 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.171 0.829 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.225 0.775 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.874 -23.266 0.106 24.260 hybrid contribution 2.317 1.230 -1.638 3.092 sum 9.191 -22.036 -1.532 23.925 Atomic orbital electron populations 1.70039 1.05906 1.27157 1.47439 1.25022 0.95084 0.99084 0.94694 0.86114 0.79639 0.81906 0.77858 1.19636 1.20607 1.20569 1.22740 0.94539 0.90852 1.58202 0.90971 1.84647 1.09642 0.99374 1.96822 1.23222 1.02763 0.97435 1.02650 1.21229 0.97002 0.92029 1.03077 1.22054 0.97128 0.87375 1.00032 1.60164 1.16809 1.01602 1.50655 1.22357 0.93836 0.91816 0.94263 0.90120 1.24382 1.00425 1.00231 0.99408 1.22327 0.82132 0.95760 0.95105 0.92051 1.86510 1.26334 1.88796 1.32739 1.22626 0.98405 0.95507 0.92901 1.22355 0.98513 0.96175 0.96845 1.22923 0.97009 0.98151 1.00287 1.22590 0.95994 0.98042 0.98075 0.92395 0.92163 0.92431 0.91923 0.90733 0.95695 0.91304 0.82902 0.90948 0.89358 0.77489 0.89711 0.90908 0.90656 0.91595 0.91626 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.40 13.22 55.49 0.73 -25.66 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 21.84 29.55 -169.99 -5.02 16.82 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -15.07 9.50 30.94 0.29 -14.78 16 8 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 9 S -0.13 -3.58 21.44 -107.50 -2.30 -5.88 16 10 C -0.11 -2.33 5.67 37.16 0.21 -2.12 16 11 C -0.09 -1.63 5.48 -26.73 -0.15 -1.77 16 12 C 0.06 0.91 5.55 -3.82 -0.02 0.89 16 13 N -0.66 -8.52 6.24 -106.25 -0.66 -9.18 16 14 C 0.09 0.96 4.05 -67.26 -0.27 0.69 16 15 H 0.08 0.88 7.90 -51.93 -0.41 0.47 16 16 C -0.20 -1.82 7.47 -25.75 -0.19 -2.01 16 17 C 0.11 0.93 5.07 -26.28 -0.13 0.80 16 18 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 19 O -0.54 -5.03 11.80 -35.23 -0.42 -5.45 16 20 C -0.09 -0.90 0.89 -154.71 -0.14 -1.04 16 21 C -0.10 -1.08 7.45 -26.28 -0.20 -1.27 16 22 C -0.15 -1.23 8.08 -25.74 -0.21 -1.43 16 23 C -0.11 -0.87 7.84 -26.28 -0.21 -1.08 16 24 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 26 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 31 H 0.35 4.56 7.06 -39.29 -0.28 4.29 16 32 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.38 1.97 9.12 45.56 0.42 2.38 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.87 7.83 -51.93 -0.41 0.47 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 338.06 15.07 5.09 5.09 Total: -1.00 -32.10 338.06 -9.82 -41.93 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.14 Total: 3.55 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: -1.10 Total: -21.21 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.07 Total: -34.85 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.42 Total: -5.45 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -2.30 Total: -5.88 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.10 -9.82 -41.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595779955.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.942 kcal (2) G-P(sol) polarization free energy of solvation -32.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds