Wall clock time and date at job start Mon Mar 30 2020 04:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 120.00007 * 2 1 4 4 H 1.48502 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47665 * 300.00513 * 3 2 1 6 6 H 1.48503 * 109.46798 * 60.00899 * 3 2 1 7 7 C 1.38802 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99804 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00251 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00092 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47152 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46769 * 180.02562 * 12 11 10 14 14 C 1.46906 * 110.99793 * 180.02562 * 13 12 11 15 15 H 1.08998 * 112.88635 * 26.84597 * 14 13 12 16 16 C 1.53946 * 113.66253 * 255.49621 * 14 13 12 17 17 C 1.53950 * 87.29661 * 270.26467 * 16 14 13 18 18 H 1.09000 * 113.66373 * 220.79560 * 17 16 14 19 19 O 1.42902 * 113.66413 * 89.73631 * 17 16 14 20 20 C 1.52909 * 113.66256 * 158.31052 * 14 13 12 21 21 C 1.52913 * 121.13828 * 323.85376 * 20 14 13 22 22 C 1.53957 * 86.78145 * 209.37569 * 21 20 14 23 23 C 1.52908 * 121.13830 * 215.29195 * 20 14 13 24 24 H 0.96996 * 119.99880 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46718 * 59.99828 * 10 9 7 26 26 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 27 27 H 1.09001 * 109.46652 * 60.00210 * 11 10 9 28 28 H 1.08992 * 109.47514 * 300.00299 * 11 10 9 29 29 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 30 30 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 31 31 H 1.00898 * 110.99877 * 56.04956 * 13 12 11 32 32 H 1.09007 * 113.58178 * 24.86994 * 16 14 13 33 33 H 1.09005 * 113.58067 * 155.58288 * 16 14 13 34 34 H 0.96699 * 113.99909 * 79.50549 * 19 17 16 35 35 H 1.09000 * 113.66389 * 323.84639 * 21 20 14 36 36 H 1.08996 * 113.66611 * 94.90403 * 21 20 14 37 37 H 1.09002 * 113.58140 * 270.13461 * 22 21 20 38 38 H 1.08997 * 113.64981 * 139.34732 * 22 21 20 39 39 H 1.09003 * 113.65626 * 265.09198 * 23 20 14 40 40 H 1.08991 * 113.66484 * 36.14732 * 23 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8917 2.3963 1.2127 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9792 -5.3243 0.0001 12 6 3.1513 -6.3078 -0.0005 13 7 2.6361 -7.6835 -0.0005 14 6 3.7359 -8.6575 -0.0005 15 1 4.6472 -8.2678 0.4529 16 6 3.9643 -9.3315 -1.3656 17 6 2.9611 -10.4104 -0.9189 18 1 3.2539 -11.4225 -1.1983 19 8 1.6059 -10.1089 -1.2572 20 6 3.3325 -10.0386 0.5171 21 6 2.3271 -10.1924 1.6588 22 6 3.0673 -11.4933 2.0196 23 6 4.3058 -10.8940 1.3289 24 1 -0.4850 0.8400 0.0004 25 1 3.1244 -3.7314 0.8895 26 1 3.1245 -3.7314 -0.8905 27 1 1.3704 -5.4846 -0.8897 28 1 1.3709 -5.4841 0.8902 29 1 3.7594 -6.1478 -0.8909 30 1 3.7605 -6.1476 0.8891 31 1 2.0163 -7.8375 -0.7817 32 1 3.6168 -8.7357 -2.2097 33 1 4.9785 -9.7070 -1.5023 34 1 1.3798 -10.2952 -2.1788 35 1 2.4083 -9.4172 2.4207 36 1 1.3028 -10.3511 1.3215 37 1 2.6708 -12.3748 1.5157 38 1 3.1948 -11.6408 3.0920 39 1 4.8622 -11.6132 0.7277 40 1 4.9431 -10.3160 1.9979 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595779955.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:18 Heat of formation + Delta-G solvation = -41.932602 kcal Electronic energy + Delta-G solvation = -18422.559535 eV Core-core repulsion = 15556.334340 eV Total energy + Delta-G solvation = -2866.225194 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.69949 -37.48460 -36.90833 -34.72899 -34.57930 -31.99575 -27.88746 -26.76096 -26.23360 -25.49974 -24.36183 -22.45892 -21.60232 -19.58707 -18.94653 -18.19490 -16.94034 -16.90749 -16.51140 -16.37203 -16.29968 -15.88766 -15.07387 -14.75453 -14.59297 -14.15055 -13.69660 -13.56829 -13.31574 -13.17984 -13.07660 -12.93304 -12.80520 -12.54326 -12.41622 -12.34894 -12.09603 -11.86824 -11.48343 -11.27475 -11.16170 -11.09069 -10.78245 -10.40148 -10.31028 -9.20201 -8.67946 -8.38124 -6.14810 1.30860 1.38028 1.49106 1.73591 2.27469 2.85428 2.95934 3.19805 3.33274 3.66658 3.71306 3.85385 3.92683 3.99647 4.03494 4.12781 4.29493 4.34311 4.46839 4.50046 4.59612 4.73854 4.78616 4.80350 4.84317 4.88790 4.96865 4.98579 5.08262 5.12727 5.20403 5.28942 5.34091 5.38964 5.52471 5.62405 6.17564 6.20488 6.55353 6.95761 7.03840 8.71713 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.041161 B = 0.002888 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.090148 B = 9693.451222 C = 9739.863219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.538 4.538 8 H 0.072 0.928 9 S -0.200 6.200 10 C -0.086 4.086 11 C -0.082 4.082 12 C 0.079 3.921 13 N -0.669 5.669 14 C 0.075 3.925 15 H 0.079 0.921 16 C -0.194 4.194 17 C 0.109 3.891 18 H 0.081 0.919 19 O -0.560 6.560 20 C -0.097 4.097 21 C -0.111 4.111 22 C -0.139 4.139 23 C -0.101 4.101 24 H 0.272 0.728 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.070 0.930 31 H 0.349 0.651 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.394 0.606 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.277 -24.284 -1.659 26.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.191 4.191 3 Si 0.818 3.182 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.029 5.971 10 C -0.236 4.236 11 C -0.121 4.121 12 C -0.052 4.052 13 N -0.300 5.300 14 C -0.036 4.036 15 H 0.098 0.902 16 C -0.233 4.233 17 C 0.050 3.950 18 H 0.099 0.901 19 O -0.368 6.368 20 C -0.098 4.098 21 C -0.149 4.149 22 C -0.176 4.176 23 C -0.138 4.138 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.169 0.831 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.244 0.756 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.867 -24.197 -0.362 25.773 hybrid contribution 1.661 1.429 -1.486 2.647 sum 10.528 -22.769 -1.848 25.153 Atomic orbital electron populations 1.70170 1.07725 1.28513 1.48033 1.26108 0.96072 1.03209 0.93743 0.84933 0.78396 0.76491 0.78334 1.18624 1.19583 1.19625 1.23072 0.94714 0.91953 1.58810 0.90936 1.84680 1.14162 1.01261 1.97027 1.23140 1.00084 0.97468 1.02859 1.21102 0.98018 0.90574 1.02421 1.21817 0.95468 0.87506 1.00431 1.60123 1.17849 1.01219 1.50836 1.22486 0.93068 0.91850 0.96147 0.90234 1.24318 1.01441 0.99758 0.97794 1.22353 0.81848 0.96653 0.94166 0.90115 1.86473 1.26832 1.89039 1.34406 1.22766 0.98595 0.95155 0.93325 1.22322 0.97970 0.97318 0.97270 1.22890 0.96672 0.97126 1.00901 1.22569 0.95653 0.97839 0.97752 0.91939 0.91968 0.91942 0.92103 0.91896 0.94959 0.91169 0.83086 0.91399 0.87598 0.75586 0.91403 0.92888 0.89924 0.91005 0.89735 0.89207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.80 13.22 21.65 0.29 -55.51 16 2 C 0.01 0.78 5.49 84.86 0.47 1.24 16 3 Si 1.00 44.59 29.55 68.60 2.03 46.62 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.54 -31.79 9.50 67.95 0.65 -31.14 16 8 H 0.07 4.13 7.80 -2.91 -0.02 4.11 16 9 S -0.20 -11.01 21.44 -56.49 -1.21 -12.22 16 10 C -0.09 -3.60 5.67 71.98 0.41 -3.19 16 11 C -0.08 -2.82 5.48 30.59 0.17 -2.65 16 12 C 0.08 2.15 5.55 86.30 0.48 2.63 16 13 N -0.67 -16.77 6.24 -490.06 -3.06 -19.84 16 14 C 0.08 1.51 4.05 45.20 0.18 1.70 16 15 H 0.08 1.60 7.90 -2.39 -0.02 1.58 16 16 C -0.19 -2.98 7.47 31.23 0.23 -2.75 16 17 C 0.11 1.67 5.07 30.88 0.16 1.83 16 18 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 19 O -0.56 -9.77 11.80 -148.98 -1.76 -11.53 16 20 C -0.10 -1.73 0.89 -52.31 -0.05 -1.77 16 21 C -0.11 -2.32 7.45 30.89 0.23 -2.09 16 22 C -0.14 -2.09 8.08 31.23 0.25 -1.84 16 23 C -0.10 -1.36 7.84 30.89 0.24 -1.12 16 24 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 25 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 31 H 0.35 8.88 7.06 -89.70 -0.63 8.25 16 32 H 0.07 1.12 8.10 -2.38 -0.02 1.10 16 33 H 0.11 1.27 8.14 -2.38 -0.02 1.26 16 34 H 0.39 3.55 9.12 -74.06 -0.68 2.88 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.05 1.29 7.83 -2.39 -0.02 1.27 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -69.54 338.06 -0.59 -70.13 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -0.29 Total: 21.51 kcal Atomic # 6 Polarization: -42.58 SS G_CDS: 3.42 Total: -39.16 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -2.77 Total: -75.35 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -1.76 Total: -11.53 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: -11.01 SS G_CDS: -1.21 Total: -12.22 kcal Total: -69.54 -0.59 -70.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595779955.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.199 kcal (2) G-P(sol) polarization free energy of solvation -69.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds