Wall clock time and date at job start Mon Mar 30 2020 04:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00307 * 2 1 4 4 H 1.48499 * 109.47282 * 239.99621 * 3 2 1 5 5 H 1.48497 * 109.47200 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47280 * 119.99995 * 3 2 1 7 7 C 1.38806 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99918 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47004 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.46901 * 180.02562 * 12 11 10 14 14 C 1.46907 * 110.99665 * 179.97438 * 13 12 11 15 15 H 1.09002 * 112.88388 * 333.15618 * 14 13 12 16 16 C 1.53950 * 113.66105 * 104.50376 * 14 13 12 17 17 C 1.53952 * 87.29272 * 139.20782 * 16 14 13 18 18 H 1.08997 * 113.67046 * 89.73499 * 17 16 14 19 19 O 1.42902 * 113.66092 * 220.69873 * 17 16 14 20 20 C 1.52908 * 113.66043 * 201.69173 * 14 13 12 21 21 C 1.52904 * 121.14371 * 94.90617 * 20 14 13 22 22 C 1.53959 * 86.78517 * 209.37597 * 21 20 14 23 23 C 1.52911 * 121.14041 * 346.34093 * 20 14 13 24 24 H 0.97010 * 119.99946 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47115 * 60.00094 * 10 9 7 26 26 H 1.09001 * 109.46925 * 300.00251 * 10 9 7 27 27 H 1.09001 * 109.47194 * 299.99731 * 11 10 9 28 28 H 1.08992 * 109.47399 * 59.99903 * 11 10 9 29 29 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 30 30 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 31 31 H 1.00898 * 111.00229 * 56.04458 * 13 12 11 32 32 H 1.08999 * 113.57840 * 253.80402 * 16 14 13 33 33 H 1.08997 * 113.58336 * 24.60025 * 16 14 13 34 34 H 0.96691 * 114.00044 * 280.49722 * 19 17 16 35 35 H 1.08997 * 113.66506 * 323.84966 * 21 20 14 36 36 H 1.08997 * 113.66361 * 94.90291 * 21 20 14 37 37 H 1.09000 * 113.57637 * 270.13357 * 22 21 20 38 38 H 1.09001 * 113.64790 * 139.34697 * 22 21 20 39 39 H 1.09000 * 113.66085 * 265.10452 * 23 20 14 40 40 H 1.09005 * 113.65827 * 36.05574 * 23 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0019 10 6 2.5156 -3.8915 0.0029 11 6 1.9790 -5.3243 0.0036 12 6 3.1510 -6.3078 0.0051 13 7 2.6357 -7.6835 0.0051 14 6 3.7355 -8.6575 0.0059 15 1 4.6471 -8.2679 -0.4471 16 6 3.9631 -9.3312 1.3714 17 6 4.1837 -10.6471 0.6033 18 1 5.2215 -10.8182 0.3174 19 8 3.5852 -11.7838 1.2293 20 6 3.3323 -10.0387 -0.5117 21 6 3.5485 -10.4292 -1.9741 22 6 2.3242 -11.3498 -1.8189 23 6 1.8616 -10.4212 -0.6816 24 1 -0.4850 0.8401 -0.0004 25 1 3.1242 -3.7307 0.8928 26 1 3.1243 -3.7322 -0.8872 27 1 1.3701 -5.4839 0.8935 28 1 1.3706 -5.4849 -0.8864 29 1 3.7602 -6.1485 -0.8846 30 1 3.7591 -6.1471 0.8954 31 1 2.0170 -7.8379 -0.7768 32 1 4.8529 -8.9750 1.8904 33 1 3.0772 -9.3402 2.0063 34 1 4.0971 -12.1412 1.9677 35 1 3.3925 -9.6082 -2.6738 36 1 4.4803 -10.9665 -2.1503 37 1 2.5753 -12.3566 -1.4850 38 1 1.6606 -11.3443 -2.6836 39 1 1.4459 -10.9520 0.1748 40 1 1.2313 -9.5973 -1.0164 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595779957.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:24 Heat of formation + Delta-G solvation = -22.159853 kcal Electronic energy + Delta-G solvation = -18288.607465 eV Core-core repulsion = 15423.239681 eV Total energy + Delta-G solvation = -2865.367784 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.96140 -36.36268 -36.22596 -33.89013 -32.41822 -31.12663 -26.03380 -25.86247 -25.24550 -24.66747 -22.89962 -21.19110 -20.89773 -18.17411 -17.76569 -17.38543 -16.31654 -15.75619 -15.50756 -14.94302 -14.78930 -14.52643 -13.90034 -13.82135 -13.14378 -13.03538 -12.62552 -12.45472 -12.39676 -12.06372 -11.76456 -11.52860 -11.45303 -11.26244 -11.04221 -10.82087 -10.66883 -10.60915 -10.44521 -10.35117 -10.29425 -9.78484 -9.47534 -9.03712 -8.43114 -8.28216 -6.50726 -6.21026 -3.91134 3.22477 3.24052 3.28659 3.55297 3.77239 4.06673 4.21254 4.24254 4.43628 4.53439 4.59595 4.64308 4.68601 5.12055 5.14724 5.24814 5.25440 5.31992 5.39957 5.47527 5.53973 5.59325 5.62816 5.71790 5.76247 5.79578 5.92157 5.98834 6.08361 6.14944 6.21043 6.29439 6.36141 6.62678 6.77139 7.09961 7.35813 7.40120 7.61650 8.37938 9.24965 10.87136 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.044214 B = 0.002778 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.126010 B =10076.764659 C =10273.562206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.071 0.929 9 S -0.132 6.132 10 C -0.112 4.112 11 C -0.095 4.095 12 C 0.063 3.937 13 N -0.671 5.671 14 C 0.072 3.928 15 H 0.072 0.928 16 C -0.152 4.152 17 C 0.100 3.900 18 H 0.080 0.920 19 O -0.554 6.554 20 C -0.094 4.094 21 C -0.132 4.132 22 C -0.138 4.138 23 C -0.101 4.101 24 H 0.268 0.732 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.341 0.659 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.376 0.624 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.816 -22.750 -0.823 24.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.665 4.665 8 H 0.089 0.911 9 S 0.096 5.904 10 C -0.261 4.261 11 C -0.134 4.134 12 C -0.068 4.068 13 N -0.303 5.303 14 C -0.038 4.038 15 H 0.090 0.910 16 C -0.191 4.191 17 C 0.040 3.960 18 H 0.097 0.903 19 O -0.359 6.359 20 C -0.095 4.095 21 C -0.169 4.169 22 C -0.175 4.175 23 C -0.138 4.138 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.161 0.839 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.223 0.777 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.975 -22.718 -0.604 23.772 hybrid contribution 2.777 1.410 -0.487 3.152 sum 9.752 -21.308 -1.091 23.458 Atomic orbital electron populations 1.70016 1.05917 1.27409 1.47205 1.25015 0.95081 0.99068 0.94638 0.86226 0.79237 0.81248 0.78823 1.19970 1.20808 1.19944 1.22656 0.94475 0.90867 1.58538 0.91059 1.84630 1.09575 0.99352 1.96844 1.23222 1.02819 0.97404 1.02683 1.21243 0.96991 0.92130 1.03062 1.22083 0.97187 0.87253 1.00232 1.60589 1.17656 1.02394 1.49628 1.22543 0.93978 0.90516 0.96781 0.90993 1.23727 1.02614 0.95436 0.97313 1.22880 0.95162 0.84621 0.93319 0.90268 1.86508 1.51537 1.46884 1.50979 1.22855 0.98231 0.94569 0.93831 1.22822 0.98878 0.99695 0.95543 1.22814 0.97455 0.98461 0.98786 1.22357 0.93728 0.98837 0.98895 0.92261 0.92144 0.92401 0.90725 0.91882 0.95464 0.91143 0.83915 0.91677 0.88330 0.77705 0.89886 0.91564 0.90131 0.91656 0.90436 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 21.72 29.55 -169.99 -5.02 16.69 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -15.03 9.50 30.94 0.29 -14.74 16 8 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 9 S -0.13 -3.52 21.44 -107.50 -2.30 -5.82 16 10 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 11 C -0.10 -1.58 5.48 -26.73 -0.15 -1.73 16 12 C 0.06 0.85 5.55 -3.82 -0.02 0.83 16 13 N -0.67 -8.05 6.28 -106.24 -0.67 -8.72 16 14 C 0.07 0.75 3.99 -67.26 -0.27 0.48 16 15 H 0.07 0.73 7.90 -51.93 -0.41 0.32 16 16 C -0.15 -1.47 7.72 -25.75 -0.20 -1.67 16 17 C 0.10 0.85 5.09 -26.28 -0.13 0.72 16 18 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 19 O -0.55 -4.78 12.87 -35.23 -0.45 -5.23 16 20 C -0.09 -0.88 1.00 -154.71 -0.15 -1.04 16 21 C -0.13 -1.12 7.84 -26.28 -0.21 -1.33 16 22 C -0.14 -1.20 8.08 -25.75 -0.21 -1.41 16 23 C -0.10 -0.99 7.09 -26.28 -0.19 -1.17 16 24 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 26 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.03 0.36 8.13 -51.93 -0.42 -0.06 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.34 3.91 7.04 -39.29 -0.28 3.64 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.38 1.67 9.12 45.56 0.42 2.09 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.85 7.65 -51.93 -0.40 0.46 16 40 H 0.08 0.83 6.75 -51.93 -0.35 0.48 16 LS Contribution 337.59 15.07 5.09 5.09 Total: -1.00 -31.87 337.59 -9.80 -41.67 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.06 Total: 3.06 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -1.11 Total: -21.20 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.07 Total: -34.26 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.45 Total: -5.23 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.30 Total: -5.82 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.87 -9.80 -41.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595779957.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.513 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds