Wall clock time and date at job start Mon Mar 30 2020 04:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00307 * 2 1 4 4 H 1.48499 * 109.47282 * 239.99621 * 3 2 1 5 5 H 1.48497 * 109.47200 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47280 * 119.99995 * 3 2 1 7 7 C 1.38806 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99918 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47004 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.46901 * 180.02562 * 12 11 10 14 14 C 1.46907 * 110.99665 * 179.97438 * 13 12 11 15 15 H 1.09002 * 112.88388 * 333.15618 * 14 13 12 16 16 C 1.53950 * 113.66105 * 104.50376 * 14 13 12 17 17 C 1.53952 * 87.29272 * 139.20782 * 16 14 13 18 18 H 1.08997 * 113.67046 * 89.73499 * 17 16 14 19 19 O 1.42902 * 113.66092 * 220.69873 * 17 16 14 20 20 C 1.52908 * 113.66043 * 201.69173 * 14 13 12 21 21 C 1.52904 * 121.14371 * 94.90617 * 20 14 13 22 22 C 1.53959 * 86.78517 * 209.37597 * 21 20 14 23 23 C 1.52911 * 121.14041 * 346.34093 * 20 14 13 24 24 H 0.97010 * 119.99946 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47115 * 60.00094 * 10 9 7 26 26 H 1.09001 * 109.46925 * 300.00251 * 10 9 7 27 27 H 1.09001 * 109.47194 * 299.99731 * 11 10 9 28 28 H 1.08992 * 109.47399 * 59.99903 * 11 10 9 29 29 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 30 30 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 31 31 H 1.00898 * 111.00229 * 56.04458 * 13 12 11 32 32 H 1.08999 * 113.57840 * 253.80402 * 16 14 13 33 33 H 1.08997 * 113.58336 * 24.60025 * 16 14 13 34 34 H 0.96691 * 114.00044 * 280.49722 * 19 17 16 35 35 H 1.08997 * 113.66506 * 323.84966 * 21 20 14 36 36 H 1.08997 * 113.66361 * 94.90291 * 21 20 14 37 37 H 1.09000 * 113.57637 * 270.13357 * 22 21 20 38 38 H 1.09001 * 113.64790 * 139.34697 * 22 21 20 39 39 H 1.09000 * 113.66085 * 265.10452 * 23 20 14 40 40 H 1.09005 * 113.65827 * 36.05574 * 23 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0019 10 6 2.5156 -3.8915 0.0029 11 6 1.9790 -5.3243 0.0036 12 6 3.1510 -6.3078 0.0051 13 7 2.6357 -7.6835 0.0051 14 6 3.7355 -8.6575 0.0059 15 1 4.6471 -8.2679 -0.4471 16 6 3.9631 -9.3312 1.3714 17 6 4.1837 -10.6471 0.6033 18 1 5.2215 -10.8182 0.3174 19 8 3.5852 -11.7838 1.2293 20 6 3.3323 -10.0387 -0.5117 21 6 3.5485 -10.4292 -1.9741 22 6 2.3242 -11.3498 -1.8189 23 6 1.8616 -10.4212 -0.6816 24 1 -0.4850 0.8401 -0.0004 25 1 3.1242 -3.7307 0.8928 26 1 3.1243 -3.7322 -0.8872 27 1 1.3701 -5.4839 0.8935 28 1 1.3706 -5.4849 -0.8864 29 1 3.7602 -6.1485 -0.8846 30 1 3.7591 -6.1471 0.8954 31 1 2.0170 -7.8379 -0.7768 32 1 4.8529 -8.9750 1.8904 33 1 3.0772 -9.3402 2.0063 34 1 4.0971 -12.1412 1.9677 35 1 3.3925 -9.6082 -2.6738 36 1 4.4803 -10.9665 -2.1503 37 1 2.5753 -12.3566 -1.4850 38 1 1.6606 -11.3443 -2.6836 39 1 1.4459 -10.9520 0.1748 40 1 1.2313 -9.5973 -1.0164 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595779957.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:23 Heat of formation + Delta-G solvation = -43.981722 kcal Electronic energy + Delta-G solvation = -18289.553732 eV Core-core repulsion = 15423.239681 eV Total energy + Delta-G solvation = -2866.314051 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.68971 -37.31516 -36.97594 -34.86535 -34.59801 -32.29463 -27.89075 -26.77186 -26.54755 -25.45546 -23.80456 -22.43357 -21.72894 -19.57901 -18.87273 -18.41552 -17.21900 -16.90018 -16.56940 -16.50538 -16.19804 -15.77113 -15.21059 -14.83167 -14.62383 -13.95166 -13.76860 -13.61403 -13.29012 -13.23969 -12.95936 -12.92316 -12.80808 -12.53953 -12.44879 -12.26114 -12.16594 -11.79489 -11.49219 -11.24910 -11.14197 -11.13796 -10.96441 -10.45356 -10.31992 -9.36955 -8.67518 -8.37640 -6.14307 1.30796 1.40555 1.47433 1.74017 2.28201 2.96391 2.98604 3.30034 3.35247 3.47862 3.66485 3.81093 3.84538 3.95706 3.99110 4.01112 4.28917 4.33795 4.44435 4.51996 4.54546 4.57834 4.75590 4.78173 4.82307 4.86736 4.93304 5.06101 5.08604 5.17101 5.20517 5.26983 5.37298 5.38734 5.49393 5.57682 6.14428 6.17317 6.42545 6.95891 7.04161 8.71642 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.044214 B = 0.002778 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.126010 B =10076.764659 C =10273.562206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.014 3.986 3 Si 0.995 3.005 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.540 4.540 8 H 0.073 0.927 9 S -0.199 6.199 10 C -0.087 4.087 11 C -0.084 4.084 12 C 0.077 3.923 13 N -0.677 5.677 14 C 0.069 3.931 15 H 0.080 0.920 16 C -0.152 4.152 17 C 0.107 3.893 18 H 0.100 0.900 19 O -0.570 6.570 20 C -0.097 4.097 21 C -0.126 4.126 22 C -0.133 4.133 23 C -0.106 4.106 24 H 0.272 0.728 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.071 0.929 31 H 0.343 0.657 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.394 0.606 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.797 -23.241 -1.193 25.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.191 4.191 3 Si 0.816 3.184 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.688 4.688 8 H 0.091 0.909 9 S 0.029 5.971 10 C -0.236 4.236 11 C -0.123 4.123 12 C -0.054 4.054 13 N -0.309 5.309 14 C -0.041 4.041 15 H 0.098 0.902 16 C -0.191 4.191 17 C 0.048 3.952 18 H 0.118 0.882 19 O -0.378 6.378 20 C -0.097 4.097 21 C -0.164 4.164 22 C -0.171 4.171 23 C -0.144 4.144 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.164 0.836 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.243 0.757 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.964 -23.237 -0.963 24.925 hybrid contribution 2.141 1.451 -0.341 2.609 sum 11.105 -21.786 -1.304 24.487 Atomic orbital electron populations 1.70154 1.07727 1.28638 1.47905 1.26093 0.96052 1.03180 0.93731 0.85056 0.77932 0.75992 0.79379 1.18848 1.19931 1.18915 1.23019 0.94741 0.92016 1.58996 0.90894 1.84658 1.14173 1.01219 1.97039 1.23149 1.00086 0.97536 1.02872 1.21126 0.98061 0.90520 1.02576 1.21851 0.95540 0.87346 1.00682 1.60545 1.18528 1.01859 1.50001 1.22637 0.93596 0.90423 0.97489 0.90247 1.23681 1.02117 0.96425 0.96875 1.22865 0.95839 0.84069 0.92415 0.88229 1.86469 1.52548 1.46814 1.51935 1.22895 0.97902 0.94119 0.94822 1.22801 0.99142 0.99627 0.94814 1.22775 0.97701 0.98146 0.98438 1.22350 0.94181 0.99003 0.98836 0.91936 0.91988 0.91922 0.91776 0.91863 0.94578 0.91084 0.83635 0.90724 0.90355 0.75653 0.89730 0.90532 0.90326 0.91016 0.92069 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.48 13.22 21.65 0.29 -55.20 16 2 C 0.01 0.82 5.49 84.86 0.47 1.29 16 3 Si 0.99 44.20 29.55 68.60 2.03 46.23 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.54 -31.62 9.50 67.96 0.65 -30.97 16 8 H 0.07 4.09 7.80 -2.91 -0.02 4.07 16 9 S -0.20 -10.82 21.44 -56.49 -1.21 -12.03 16 10 C -0.09 -3.54 5.67 71.98 0.41 -3.13 16 11 C -0.08 -2.73 5.48 30.59 0.17 -2.57 16 12 C 0.08 1.96 5.55 86.30 0.48 2.44 16 13 N -0.68 -15.43 6.28 -490.04 -3.08 -18.50 16 14 C 0.07 1.29 3.99 45.20 0.18 1.47 16 15 H 0.08 1.41 7.90 -2.39 -0.02 1.39 16 16 C -0.15 -2.71 7.72 31.23 0.24 -2.47 16 17 C 0.11 1.61 5.09 30.89 0.16 1.77 16 18 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 19 O -0.57 -8.90 12.87 -148.98 -1.92 -10.82 16 20 C -0.10 -1.65 1.00 -52.31 -0.05 -1.70 16 21 C -0.13 -1.89 7.84 30.89 0.24 -1.64 16 22 C -0.13 -2.13 8.08 31.23 0.25 -1.88 16 23 C -0.11 -2.01 7.09 30.88 0.22 -1.79 16 24 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 25 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.04 0.87 8.13 -2.39 -0.02 0.85 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.34 7.53 7.04 -89.70 -0.63 6.89 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.39 2.78 9.12 -74.06 -0.68 2.10 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 1.34 7.65 -2.39 -0.02 1.33 16 40 H 0.08 1.56 6.75 -2.38 -0.02 1.55 16 Total: -1.00 -68.50 337.59 -0.77 -69.27 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -0.29 Total: 20.23 kcal Atomic # 6 Polarization: -42.58 SS G_CDS: 3.41 Total: -39.17 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -2.79 Total: -73.70 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -1.92 Total: -10.82 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: -10.82 SS G_CDS: -1.21 Total: -12.03 kcal Total: -68.50 -0.77 -69.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595779957.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.284 kcal (2) G-P(sol) polarization free energy of solvation -68.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds