Wall clock time and date at job start Mon Mar 30 2020 05:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99935 * 2 1 4 4 H 1.48498 * 109.46603 * 269.72231 * 3 2 1 5 5 H 1.48496 * 109.47225 * 29.72147 * 3 2 1 6 6 H 1.48494 * 109.47296 * 149.72158 * 3 2 1 7 7 C 1.38805 * 120.00253 * 179.71730 * 2 1 3 8 8 H 1.07999 * 119.99864 * 0.02562 * 7 2 1 9 9 S 1.76198 * 119.99843 * 180.02562 * 7 2 1 10 10 C 1.81005 * 99.99931 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47413 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47216 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47375 * 180.02562 * 12 11 10 14 14 C 1.47206 * 110.99661 * 292.26989 * 13 12 11 15 15 C 1.52662 * 108.37936 * 170.90068 * 14 13 12 16 16 C 1.53062 * 110.79253 * 61.54861 * 15 14 13 17 17 H 1.09000 * 112.25478 * 75.95219 * 16 15 14 18 18 C 1.55305 * 106.51918 * 200.32291 * 16 15 14 19 19 O 1.43354 * 107.34938 * 92.31907 * 18 16 15 20 20 C 1.44003 * 109.97989 * 0.12771 * 19 18 16 21 21 C 1.53969 * 104.49066 * 23.58561 * 20 19 18 22 22 H 1.08995 * 109.18427 * 78.35904 * 21 20 19 23 23 C 1.46648 * 111.00298 * 169.99955 * 13 12 11 24 24 H 0.97000 * 120.00481 * 0.27720 * 1 2 3 25 25 H 1.09002 * 109.46892 * 300.00109 * 10 9 7 26 26 H 1.09005 * 109.47161 * 59.99890 * 10 9 7 27 27 H 1.08995 * 109.47164 * 300.00710 * 11 10 9 28 28 H 1.09005 * 109.46829 * 59.99953 * 11 10 9 29 29 H 1.09002 * 109.47158 * 300.00419 * 12 11 10 30 30 H 1.09005 * 109.47092 * 60.00320 * 12 11 10 31 31 H 1.09004 * 109.68091 * 290.61458 * 14 13 12 32 32 H 1.08999 * 109.68667 * 51.17918 * 14 13 12 33 33 H 1.09004 * 109.20646 * 301.21319 * 15 14 13 34 34 H 1.08991 * 109.17877 * 181.86963 * 15 14 13 35 35 H 1.09004 * 109.86782 * 211.76381 * 18 16 15 36 36 H 1.09003 * 109.86617 * 332.87826 * 18 16 15 37 37 H 1.09003 * 110.42643 * 264.83302 * 20 19 18 38 38 H 1.09003 * 110.42883 * 142.34053 * 20 19 18 39 39 H 1.08999 * 109.00178 * 304.34372 * 23 13 12 40 40 H 1.09001 * 108.99464 * 63.10916 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5036 2.0430 -1.4001 5 1 1.4448 2.6544 0.6941 6 1 3.5448 1.4420 0.7059 7 6 2.0103 -1.2020 0.0059 8 1 1.4703 -2.1373 0.0101 9 16 3.7723 -1.2019 0.0066 10 6 4.0867 -2.9844 0.0143 11 6 5.5959 -3.2362 0.0153 12 6 5.8616 -4.7429 0.0225 13 7 7.3105 -4.9846 0.0241 14 6 7.9169 -4.5637 -1.2495 15 6 9.4352 -4.6256 -1.1034 16 6 9.8947 -6.0553 -0.8075 17 1 9.8714 -6.6884 -1.6945 18 6 11.3085 -5.9427 -0.1746 19 8 11.1372 -5.8903 1.2477 20 6 9.7373 -5.9627 1.5777 21 6 9.0907 -6.6549 0.3639 22 1 9.2748 -7.7275 0.4232 23 6 7.6070 -6.3998 0.2686 24 1 -0.4851 0.8400 -0.0041 25 1 3.6434 -3.4277 0.9061 26 1 3.6441 -3.4353 -0.8739 27 1 6.0387 -2.7929 -0.8765 28 1 6.0388 -2.7852 0.9034 29 1 5.4187 -5.1857 0.9147 30 1 5.4186 -5.1942 -0.8653 31 1 7.5973 -5.2339 -2.0475 32 1 7.6118 -3.5434 -1.4819 33 1 9.7438 -3.9733 -0.2865 34 1 9.8982 -4.2844 -2.0292 35 1 11.9055 -6.8140 -0.4440 36 1 11.7987 -5.0334 -0.5225 37 1 9.3253 -4.9622 1.7094 38 1 9.5891 -6.5578 2.4788 39 1 7.1336 -6.7056 1.2016 40 1 7.1964 -6.9945 -0.5475 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595828962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:53 Heat of formation + Delta-G solvation = -59.819661 kcal Electronic energy + Delta-G solvation = -18758.996717 eV Core-core repulsion = 15891.995881 eV Total energy + Delta-G solvation = -2867.000835 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.72919 -37.75728 -34.33986 -32.44284 -32.28350 -31.50537 -28.50343 -26.33211 -25.60063 -23.91377 -23.14526 -22.11347 -20.78276 -19.29403 -17.49368 -16.94767 -16.08462 -15.85737 -15.39176 -15.09684 -14.96795 -14.52430 -14.16856 -14.09690 -13.64257 -13.10544 -13.01717 -12.80983 -12.76736 -12.22463 -11.93683 -11.84622 -11.53525 -11.29003 -11.11067 -11.04250 -11.01510 -10.70759 -10.52743 -10.29359 -10.10068 -9.77178 -9.68934 -9.00583 -8.56281 -8.46487 -6.94211 -6.28538 -4.00735 3.00145 3.29982 3.45879 3.52311 3.64175 3.82156 4.03534 4.31768 4.36733 4.57819 4.78770 4.80323 4.91340 4.99275 5.07019 5.10278 5.15614 5.18781 5.25080 5.28050 5.45119 5.49847 5.53122 5.56618 5.60057 5.63443 5.74338 5.76808 5.83657 5.87284 5.99321 6.08975 6.22569 6.47206 6.63123 6.76381 6.93007 6.98062 7.95241 8.43979 9.17449 10.81002 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.042572 B = 0.003219 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.553411 B = 8696.990329 C = 8925.040747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.091 3.909 3 Si 0.862 3.138 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.237 1.237 7 C -0.502 4.502 8 H 0.087 0.913 9 S -0.215 6.215 10 C -0.082 4.082 11 C -0.096 4.096 12 C 0.059 3.941 13 N -0.529 5.529 14 C 0.047 3.953 15 C -0.112 4.112 16 C -0.118 4.118 17 H 0.093 0.907 18 C 0.055 3.945 19 O -0.389 6.389 20 C 0.060 3.940 21 C -0.115 4.115 22 H 0.082 0.918 23 C 0.065 3.935 24 H 0.270 0.730 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.147 -13.797 -1.580 24.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.161 1.161 7 C -0.650 4.650 8 H 0.105 0.895 9 S 0.013 5.987 10 C -0.231 4.231 11 C -0.135 4.135 12 C -0.070 4.070 13 N -0.254 5.254 14 C -0.081 4.081 15 C -0.150 4.150 16 C -0.137 4.137 17 H 0.111 0.889 18 C -0.022 4.022 19 O -0.308 6.308 20 C -0.016 4.016 21 C -0.134 4.134 22 H 0.100 0.900 23 C -0.063 4.063 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 21.063 -12.511 -1.031 24.520 hybrid contribution -1.393 -0.812 -0.915 1.854 sum 19.670 -13.323 -1.946 23.837 Atomic orbital electron populations 1.69936 1.05943 1.27718 1.48356 1.24802 0.94508 0.99031 0.93345 0.86667 0.81775 0.83186 0.79705 1.19399 1.20101 1.16120 1.22130 0.87138 0.97386 1.58321 0.89458 1.84161 1.11606 1.05426 1.97525 1.23016 0.97374 0.99162 1.03574 1.21324 0.94763 0.94142 1.03251 1.22173 0.86383 0.97468 1.00982 1.62428 1.12206 1.17694 1.33045 1.22219 0.94343 1.01542 0.90022 1.21630 0.95462 0.95521 1.02360 1.22718 0.94787 0.97803 0.98368 0.88916 1.23384 0.96228 1.01220 0.81322 1.88453 1.25077 1.95559 1.21744 1.23303 0.80285 1.01294 0.96674 1.22037 0.95256 1.00512 0.95551 0.90010 1.21378 0.94413 0.89175 1.01365 0.91976 0.91372 0.91682 0.91595 0.90628 0.90600 0.94710 0.94687 0.89642 0.90545 0.91337 0.91872 0.91208 0.90324 0.90156 0.90344 0.94658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.87 13.97 55.49 0.78 -26.10 16 2 C 0.09 2.68 5.50 -17.43 -0.10 2.58 16 3 Si 0.86 21.60 27.73 -169.99 -4.71 16.89 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 7 C -0.50 -14.61 10.04 30.94 0.31 -14.30 16 8 H 0.09 2.70 8.03 -52.49 -0.42 2.28 16 9 S -0.21 -5.24 19.41 -107.50 -2.09 -7.33 16 10 C -0.08 -1.57 5.67 37.16 0.21 -1.36 16 11 C -0.10 -1.45 5.20 -26.73 -0.14 -1.59 16 12 C 0.06 0.72 4.94 -3.83 -0.02 0.71 16 13 N -0.53 -5.79 4.34 -236.16 -1.03 -6.82 16 14 C 0.05 0.47 5.34 -3.83 -0.02 0.45 16 15 C -0.11 -0.99 4.85 -26.87 -0.13 -1.12 16 16 C -0.12 -0.95 3.71 -88.73 -0.33 -1.28 16 17 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 18 C 0.06 0.47 7.08 38.38 0.27 0.74 16 19 O -0.39 -4.36 11.37 -35.23 -0.40 -4.76 16 20 C 0.06 0.59 6.78 37.66 0.26 0.85 16 21 C -0.11 -0.97 2.97 -90.56 -0.27 -1.24 16 22 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 23 C 0.07 0.60 4.81 -5.04 -0.02 0.57 16 24 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.07 1.31 8.14 -51.92 -0.42 0.88 16 26 H 0.06 1.25 8.14 -51.91 -0.42 0.82 16 27 H 0.07 0.99 6.45 -51.93 -0.34 0.66 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.08 0.91 7.99 -51.93 -0.42 0.49 16 30 H 0.03 0.43 8.11 -51.93 -0.42 0.00 16 31 H 0.03 0.35 8.07 -51.93 -0.42 -0.07 16 32 H 0.09 0.94 6.23 -51.93 -0.32 0.62 16 33 H 0.08 0.78 7.24 -51.93 -0.38 0.40 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.56 7.73 -51.93 -0.40 0.16 16 37 H 0.08 0.87 7.39 -51.93 -0.38 0.48 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.68 8.03 -51.93 -0.42 0.27 16 40 H 0.04 0.32 8.10 -51.93 -0.42 -0.10 16 LS Contribution 321.49 15.07 4.84 4.84 Total: -1.00 -30.99 321.49 -9.46 -40.45 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -6.87 Total: -2.21 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 0.02 Total: -14.98 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: -0.25 Total: -32.91 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.40 Total: -4.76 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.89 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -2.09 Total: -7.33 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.99 -9.46 -40.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595828962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.368 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds