Wall clock time and date at job start Mon Mar 30 2020 05:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99935 * 2 1 4 4 H 1.48498 * 109.46603 * 269.72231 * 3 2 1 5 5 H 1.48496 * 109.47225 * 29.72147 * 3 2 1 6 6 H 1.48494 * 109.47296 * 149.72158 * 3 2 1 7 7 C 1.38805 * 120.00253 * 179.71730 * 2 1 3 8 8 H 1.07999 * 119.99864 * 0.02562 * 7 2 1 9 9 S 1.76198 * 119.99843 * 180.02562 * 7 2 1 10 10 C 1.81005 * 99.99931 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47413 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47216 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47375 * 180.02562 * 12 11 10 14 14 C 1.47206 * 110.99661 * 292.26989 * 13 12 11 15 15 C 1.52662 * 108.37936 * 170.90068 * 14 13 12 16 16 C 1.53062 * 110.79253 * 61.54861 * 15 14 13 17 17 H 1.09000 * 112.25478 * 75.95219 * 16 15 14 18 18 C 1.55305 * 106.51918 * 200.32291 * 16 15 14 19 19 O 1.43354 * 107.34938 * 92.31907 * 18 16 15 20 20 C 1.44003 * 109.97989 * 0.12771 * 19 18 16 21 21 C 1.53969 * 104.49066 * 23.58561 * 20 19 18 22 22 H 1.08995 * 109.18427 * 78.35904 * 21 20 19 23 23 C 1.46648 * 111.00298 * 169.99955 * 13 12 11 24 24 H 0.97000 * 120.00481 * 0.27720 * 1 2 3 25 25 H 1.09002 * 109.46892 * 300.00109 * 10 9 7 26 26 H 1.09005 * 109.47161 * 59.99890 * 10 9 7 27 27 H 1.08995 * 109.47164 * 300.00710 * 11 10 9 28 28 H 1.09005 * 109.46829 * 59.99953 * 11 10 9 29 29 H 1.09002 * 109.47158 * 300.00419 * 12 11 10 30 30 H 1.09005 * 109.47092 * 60.00320 * 12 11 10 31 31 H 1.09004 * 109.68091 * 290.61458 * 14 13 12 32 32 H 1.08999 * 109.68667 * 51.17918 * 14 13 12 33 33 H 1.09004 * 109.20646 * 301.21319 * 15 14 13 34 34 H 1.08991 * 109.17877 * 181.86963 * 15 14 13 35 35 H 1.09004 * 109.86782 * 211.76381 * 18 16 15 36 36 H 1.09003 * 109.86617 * 332.87826 * 18 16 15 37 37 H 1.09003 * 110.42643 * 264.83302 * 20 19 18 38 38 H 1.09003 * 110.42883 * 142.34053 * 20 19 18 39 39 H 1.08999 * 109.00178 * 304.34372 * 23 13 12 40 40 H 1.09001 * 108.99464 * 63.10916 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5036 2.0430 -1.4001 5 1 1.4448 2.6544 0.6941 6 1 3.5448 1.4420 0.7059 7 6 2.0103 -1.2020 0.0059 8 1 1.4703 -2.1373 0.0101 9 16 3.7723 -1.2019 0.0066 10 6 4.0867 -2.9844 0.0143 11 6 5.5959 -3.2362 0.0153 12 6 5.8616 -4.7429 0.0225 13 7 7.3105 -4.9846 0.0241 14 6 7.9169 -4.5637 -1.2495 15 6 9.4352 -4.6256 -1.1034 16 6 9.8947 -6.0553 -0.8075 17 1 9.8714 -6.6884 -1.6945 18 6 11.3085 -5.9427 -0.1746 19 8 11.1372 -5.8903 1.2477 20 6 9.7373 -5.9627 1.5777 21 6 9.0907 -6.6549 0.3639 22 1 9.2748 -7.7275 0.4232 23 6 7.6070 -6.3998 0.2686 24 1 -0.4851 0.8400 -0.0041 25 1 3.6434 -3.4277 0.9061 26 1 3.6441 -3.4353 -0.8739 27 1 6.0387 -2.7929 -0.8765 28 1 6.0388 -2.7852 0.9034 29 1 5.4187 -5.1857 0.9147 30 1 5.4186 -5.1942 -0.8653 31 1 7.5973 -5.2339 -2.0475 32 1 7.6118 -3.5434 -1.4819 33 1 9.7438 -3.9733 -0.2865 34 1 9.8982 -4.2844 -2.0292 35 1 11.9055 -6.8140 -0.4440 36 1 11.7987 -5.0334 -0.5225 37 1 9.3253 -4.9622 1.7094 38 1 9.5891 -6.5578 2.4788 39 1 7.1336 -6.7056 1.2016 40 1 7.1964 -6.9945 -0.5475 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595828962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:52 Heat of formation + Delta-G solvation = -79.864901 kcal Electronic energy + Delta-G solvation = -18759.865943 eV Core-core repulsion = 15891.995881 eV Total energy + Delta-G solvation = -2867.870062 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.45124 -38.61571 -35.36541 -34.69047 -33.14125 -32.38298 -29.27105 -28.03018 -27.18469 -24.77783 -24.06019 -22.82016 -21.91581 -20.01495 -19.60455 -17.73748 -17.11373 -16.86582 -16.75094 -16.35507 -16.14888 -15.74352 -15.28606 -15.01653 -14.93702 -14.41031 -14.07648 -13.83231 -13.76698 -13.42051 -13.33893 -13.07275 -12.87721 -12.74610 -12.49390 -12.11331 -11.99079 -11.75746 -11.73272 -11.63615 -11.20064 -11.17177 -11.08373 -10.56000 -10.43327 -9.29850 -8.99395 -8.52552 -6.23688 1.12634 1.31584 1.47922 1.74455 2.24588 2.68110 2.85555 2.87044 3.00570 3.37588 3.69421 3.88028 3.94668 4.09701 4.16729 4.23054 4.32907 4.37287 4.42129 4.47571 4.50537 4.55650 4.68788 4.70820 4.78661 4.81988 4.85157 4.89816 4.94912 5.03831 5.09795 5.18228 5.21441 5.29335 5.39873 5.69177 6.06166 6.09096 6.09457 6.12785 6.91715 8.60636 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.042572 B = 0.003219 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.553411 B = 8696.990329 C = 8925.040747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.037 3.963 3 Si 0.926 3.074 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.229 1.229 7 C -0.522 4.522 8 H 0.050 0.950 9 S -0.222 6.222 10 C -0.069 4.069 11 C -0.083 4.083 12 C 0.069 3.931 13 N -0.538 5.538 14 C 0.045 3.955 15 C -0.108 4.108 16 C -0.113 4.113 17 H 0.111 0.889 18 C 0.050 3.950 19 O -0.412 6.412 20 C 0.059 3.941 21 C -0.110 4.110 22 H 0.097 0.903 23 C 0.066 3.934 24 H 0.277 0.723 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.112 -14.381 -2.076 26.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.167 4.167 3 Si 0.747 3.253 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.153 1.153 7 C -0.670 4.670 8 H 0.068 0.932 9 S 0.006 5.994 10 C -0.218 4.218 11 C -0.122 4.122 12 C -0.061 4.061 13 N -0.263 5.263 14 C -0.082 4.082 15 C -0.145 4.145 16 C -0.131 4.131 17 H 0.129 0.871 18 C -0.026 4.026 19 O -0.333 6.333 20 C -0.017 4.017 21 C -0.129 4.129 22 H 0.115 0.885 23 C -0.062 4.062 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 23.034 -13.108 -1.529 26.547 hybrid contribution -1.993 -0.750 -0.759 2.260 sum 21.041 -13.858 -2.288 25.299 Atomic orbital electron populations 1.70034 1.07671 1.29133 1.49306 1.25789 0.95413 1.02790 0.92743 0.85708 0.80739 0.78608 0.80260 1.18540 1.18746 1.15285 1.22348 0.90125 0.96227 1.58255 0.93150 1.83872 1.07466 1.10485 1.97565 1.23078 1.00329 0.94904 1.03471 1.21195 0.91375 0.96510 1.03102 1.21982 0.87656 0.94991 1.01462 1.62386 1.11028 1.19213 1.33646 1.22237 0.95155 1.00984 0.89850 1.21589 0.94542 0.95999 1.02404 1.22735 0.94172 0.97378 0.98824 0.87065 1.23522 0.96813 1.02039 0.80197 1.88427 1.25789 1.95678 1.23359 1.23299 0.79943 1.00656 0.97776 1.22020 0.94602 1.01236 0.95032 0.88492 1.21415 0.94991 0.87939 1.01866 0.91386 0.91527 0.91733 0.91349 0.91168 0.90103 0.94324 0.94026 0.90808 0.92287 0.89927 0.90449 0.91010 0.92089 0.89395 0.89904 0.93899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.17 13.97 21.65 0.30 -56.87 16 2 C 0.04 2.20 5.50 84.86 0.47 2.67 16 3 Si 0.93 44.37 27.73 68.60 1.90 46.27 16 4 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.23 -10.62 6.74 99.48 0.67 -9.95 16 7 C -0.52 -30.97 10.04 67.96 0.68 -30.29 16 8 H 0.05 3.24 8.03 -2.91 -0.02 3.22 16 9 S -0.22 -10.72 19.41 -56.49 -1.10 -11.82 16 10 C -0.07 -2.59 5.67 71.98 0.41 -2.18 16 11 C -0.08 -2.39 5.20 30.59 0.16 -2.23 16 12 C 0.07 1.56 4.94 86.30 0.43 1.99 16 13 N -0.54 -10.77 4.34 -901.06 -3.91 -14.69 16 14 C 0.05 0.84 5.34 86.13 0.46 1.30 16 15 C -0.11 -1.69 4.85 30.50 0.15 -1.55 16 16 C -0.11 -1.51 3.71 -9.57 -0.04 -1.55 16 17 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 18 C 0.05 0.76 7.08 72.77 0.52 1.28 16 19 O -0.41 -8.73 11.37 -148.98 -1.69 -10.42 16 20 C 0.06 1.08 6.78 72.31 0.49 1.57 16 21 C -0.11 -1.59 2.97 -10.76 -0.03 -1.62 16 22 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 23 C 0.07 1.05 4.81 85.65 0.41 1.46 16 24 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 25 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.07 1.96 6.45 -2.39 -0.02 1.94 16 28 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 29 H 0.08 1.77 7.99 -2.39 -0.02 1.75 16 30 H 0.04 0.86 8.11 -2.38 -0.02 0.84 16 31 H 0.04 0.72 8.07 -2.39 -0.02 0.70 16 32 H 0.07 1.53 6.23 -2.39 -0.01 1.51 16 33 H 0.06 1.15 7.24 -2.39 -0.02 1.13 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.07 1.04 7.73 -2.39 -0.02 1.02 16 37 H 0.06 1.31 7.39 -2.39 -0.02 1.29 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.25 8.03 -2.39 -0.02 1.23 16 40 H 0.04 0.64 8.10 -2.39 -0.02 0.62 16 Total: -1.00 -66.89 321.49 0.56 -66.33 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.96 Total: 10.35 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 4.10 Total: -29.16 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: -3.61 Total: -71.56 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -1.69 Total: -10.42 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.90 Total: 46.27 kcal Atomic # 16 Polarization: -10.72 SS G_CDS: -1.10 Total: -11.82 kcal Total: -66.89 0.56 -66.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595828962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.535 kcal (2) G-P(sol) polarization free energy of solvation -66.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds