Wall clock time and date at job start Mon Mar 30 2020 05:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86794 * 119.99985 * 2 1 4 4 H 1.48495 * 109.47119 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47227 * 299.99531 * 3 2 1 6 6 H 1.48499 * 109.47376 * 59.99375 * 3 2 1 7 7 C 1.38794 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99646 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00323 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99878 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47089 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47114 * 179.97438 * 12 11 10 14 14 C 1.46270 * 111.00341 * 297.91999 * 13 12 11 15 15 C 1.53965 * 112.12733 * 179.34902 * 14 13 12 16 16 C 1.51343 * 106.63403 * 55.78171 * 15 14 13 17 17 H 1.08992 * 110.47847 * 55.84620 * 16 15 14 18 18 C 1.52117 * 118.45393 * 183.92256 * 16 15 14 19 19 O 1.44638 * 106.03184 * 144.59220 * 18 16 15 20 20 C 1.45074 * 109.64314 * 356.64942 * 19 18 16 21 21 C 1.52831 * 103.58020 * 335.35321 * 20 19 18 22 22 H 1.08996 * 110.56052 * 283.69514 * 21 20 19 23 23 C 1.47809 * 111.00041 * 169.99666 * 13 12 11 24 24 H 0.97003 * 119.99928 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47446 * 60.00463 * 10 9 7 26 26 H 1.09001 * 109.47383 * 300.00236 * 10 9 7 27 27 H 1.09001 * 109.47002 * 299.99666 * 11 10 9 28 28 H 1.08993 * 109.46955 * 60.00103 * 11 10 9 29 29 H 1.09001 * 109.47289 * 299.99953 * 12 11 10 30 30 H 1.09004 * 109.47261 * 59.99697 * 12 11 10 31 31 H 1.09004 * 108.94957 * 300.03001 * 14 13 12 32 32 H 1.08998 * 108.94996 * 58.65883 * 14 13 12 33 33 H 1.08999 * 110.01989 * 296.50021 * 15 14 13 34 34 H 1.09006 * 110.10219 * 175.10603 * 15 14 13 35 35 H 1.09007 * 110.14057 * 25.45104 * 18 16 15 36 36 H 1.09000 * 110.19555 * 263.76566 * 18 16 15 37 37 H 1.08999 * 110.60406 * 216.83194 * 20 19 18 38 38 H 1.08997 * 110.73774 * 93.93822 * 20 19 18 39 39 H 1.09000 * 110.01032 * 304.10866 * 23 13 12 40 40 H 1.09006 * 110.00587 * 65.42355 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8917 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9792 -5.3243 -0.0001 12 6 3.1513 -6.3077 0.0005 13 7 2.6361 -7.6834 0.0005 14 6 1.8530 -7.9500 1.2068 15 6 1.2865 -9.3815 1.2259 16 6 2.4661 -10.3163 1.0670 17 1 3.2097 -10.1269 1.8410 18 6 2.1978 -11.8098 0.9592 19 8 3.1858 -12.3276 0.0383 20 6 3.9870 -11.2358 -0.4820 21 6 3.0724 -10.0197 -0.3390 22 1 2.3082 -10.0219 -1.1162 23 6 3.7231 -8.6561 -0.2386 24 1 -0.4850 0.8401 -0.0004 25 1 3.1244 -3.7314 0.8906 26 1 3.1245 -3.7313 -0.8894 27 1 1.3704 -5.4847 0.8897 28 1 1.3709 -5.4840 -0.8903 29 1 3.7605 -6.1475 -0.8890 30 1 3.7593 -6.1478 0.8910 31 1 2.4896 -7.8095 2.0804 32 1 1.0262 -7.2414 1.2559 33 1 0.5886 -9.5177 0.3999 34 1 0.7838 -9.5729 2.1741 35 1 1.1945 -11.9838 0.5702 36 1 2.3092 -12.2835 1.9345 37 1 4.2355 -11.4077 -1.5293 38 1 4.8931 -11.1059 0.1097 39 1 4.2377 -8.4190 -1.1697 40 1 4.4288 -8.6384 0.5921 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595828963.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:59 Heat of formation + Delta-G solvation = -56.370071 kcal Electronic energy + Delta-G solvation = -18532.736183 eV Core-core repulsion = 15665.884933 eV Total energy + Delta-G solvation = -2866.851250 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.66833 -37.78948 -34.42828 -32.44327 -32.17652 -31.37411 -28.50161 -26.38032 -25.49062 -24.14464 -22.61876 -21.65689 -20.53846 -20.29651 -17.47158 -16.50984 -16.20184 -15.58258 -15.47687 -15.21639 -14.80874 -14.72151 -14.25655 -13.90456 -13.59275 -13.30740 -13.14403 -12.72957 -12.64875 -12.03722 -11.91880 -11.40641 -11.36218 -11.35083 -11.10489 -11.05859 -10.93045 -10.78171 -10.59671 -10.36283 -10.21391 -9.84798 -9.52521 -9.06877 -8.32594 -8.29003 -6.52832 -6.23191 -3.93243 3.20475 3.21210 3.29408 3.46891 3.55999 3.72777 3.96674 4.22271 4.37951 4.57234 4.81284 4.97352 5.01144 5.06739 5.09897 5.12879 5.21665 5.24515 5.32474 5.37477 5.42374 5.48308 5.52857 5.59828 5.63126 5.72464 5.74849 5.81401 5.86564 5.92028 6.07061 6.10514 6.34039 6.53762 6.58340 6.73886 7.03203 7.08612 7.60543 8.36603 9.23271 10.85068 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.059845 B = 0.002845 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.764501 B = 9838.896131 C =10125.954457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.515 4.515 8 H 0.072 0.928 9 S -0.133 6.133 10 C -0.113 4.113 11 C -0.095 4.095 12 C 0.066 3.934 13 N -0.551 5.551 14 C 0.059 3.941 15 C -0.101 4.101 16 C -0.133 4.133 17 H 0.078 0.922 18 C 0.061 3.939 19 O -0.390 6.390 20 C 0.060 3.940 21 C -0.127 4.127 22 H 0.098 0.902 23 C 0.077 3.923 24 H 0.267 0.733 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.031 0.969 31 H 0.028 0.972 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.187 -20.996 1.639 21.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.139 4.139 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.663 4.663 8 H 0.091 0.909 9 S 0.095 5.905 10 C -0.262 4.262 11 C -0.134 4.134 12 C -0.063 4.063 13 N -0.276 5.276 14 C -0.069 4.069 15 C -0.139 4.139 16 C -0.152 4.152 17 H 0.097 0.903 18 C -0.016 4.016 19 O -0.310 6.310 20 C -0.016 4.016 21 C -0.146 4.146 22 H 0.117 0.883 23 C -0.051 4.051 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.621 -21.320 1.229 21.850 hybrid contribution 2.422 1.675 0.788 3.048 sum 7.043 -19.646 2.017 20.967 Atomic orbital electron populations 1.70038 1.05911 1.27198 1.47387 1.25021 0.95090 0.99105 0.94649 0.86111 0.79636 0.81874 0.77884 1.19629 1.20552 1.20590 1.22731 0.94532 0.90795 1.58290 0.90949 1.84630 1.09571 0.99428 1.96837 1.23234 1.02855 0.97406 1.02705 1.21322 0.96988 0.91938 1.03137 1.22121 0.97107 0.86373 1.00654 1.61004 1.25145 1.02673 1.38770 1.22068 0.97907 0.96811 0.90125 1.21342 0.96514 0.93332 1.02671 1.22437 0.99852 0.94822 0.98048 0.90345 1.22720 0.92671 0.92737 0.93450 1.88928 1.48450 1.31668 1.61925 1.22994 0.93533 0.85608 0.99502 1.22629 0.99559 0.94443 0.97928 0.88348 1.21678 0.92084 0.90406 1.00921 0.92370 0.92396 0.92123 0.91648 0.90716 0.90722 0.95074 0.95363 0.89494 0.90459 0.90893 0.91163 0.91045 0.89396 0.92038 0.90175 0.94603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.04 13.22 55.49 0.73 -25.30 16 2 C 0.07 2.00 5.49 -17.43 -0.10 1.90 16 3 Si 0.92 21.56 29.55 -169.99 -5.02 16.53 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.81 9.50 30.94 0.29 -14.52 16 8 H 0.07 2.02 7.80 -52.48 -0.41 1.61 16 9 S -0.13 -3.48 21.44 -107.50 -2.30 -5.79 16 10 C -0.11 -2.26 5.67 37.16 0.21 -2.05 16 11 C -0.10 -1.54 5.03 -26.73 -0.13 -1.67 16 12 C 0.07 0.87 5.01 -3.83 -0.02 0.85 16 13 N -0.55 -6.45 4.54 -234.74 -1.07 -7.52 16 14 C 0.06 0.64 5.15 -3.66 -0.02 0.62 16 15 C -0.10 -0.89 5.88 -27.06 -0.16 -1.05 16 16 C -0.13 -1.14 2.36 -90.32 -0.21 -1.36 16 17 H 0.08 0.70 7.94 -51.93 -0.41 0.28 16 18 C 0.06 0.52 7.53 36.71 0.28 0.80 16 19 O -0.39 -4.16 11.48 -35.23 -0.40 -4.57 16 20 C 0.06 0.52 7.45 37.07 0.28 0.79 16 21 C -0.13 -1.14 2.63 -89.92 -0.24 -1.37 16 22 H 0.10 0.98 8.07 -51.93 -0.42 0.56 16 23 C 0.08 0.74 5.33 -4.12 -0.02 0.72 16 24 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 26 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 27 H 0.06 1.06 6.41 -51.93 -0.33 0.73 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 1.03 6.23 -51.93 -0.32 0.71 16 33 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 40 H 0.04 0.34 7.98 -51.93 -0.41 -0.07 16 LS Contribution 326.92 15.07 4.93 4.93 Total: -1.00 -31.12 326.92 -9.91 -41.02 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -6.93 Total: -2.97 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 0.16 Total: -16.34 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: -0.33 Total: -32.82 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.40 Total: -4.57 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -2.30 Total: -5.79 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.12 -9.91 -41.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595828963.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.346 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds