Wall clock time and date at job start Mon Mar 30 2020 05:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86794 * 119.99985 * 2 1 4 4 H 1.48495 * 109.47119 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47227 * 299.99531 * 3 2 1 6 6 H 1.48499 * 109.47376 * 59.99375 * 3 2 1 7 7 C 1.38794 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99646 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00323 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99878 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47089 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47114 * 179.97438 * 12 11 10 14 14 C 1.46270 * 111.00341 * 297.91999 * 13 12 11 15 15 C 1.53965 * 112.12733 * 179.34902 * 14 13 12 16 16 C 1.51343 * 106.63403 * 55.78171 * 15 14 13 17 17 H 1.08992 * 110.47847 * 55.84620 * 16 15 14 18 18 C 1.52117 * 118.45393 * 183.92256 * 16 15 14 19 19 O 1.44638 * 106.03184 * 144.59220 * 18 16 15 20 20 C 1.45074 * 109.64314 * 356.64942 * 19 18 16 21 21 C 1.52831 * 103.58020 * 335.35321 * 20 19 18 22 22 H 1.08996 * 110.56052 * 283.69514 * 21 20 19 23 23 C 1.47809 * 111.00041 * 169.99666 * 13 12 11 24 24 H 0.97003 * 119.99928 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47446 * 60.00463 * 10 9 7 26 26 H 1.09001 * 109.47383 * 300.00236 * 10 9 7 27 27 H 1.09001 * 109.47002 * 299.99666 * 11 10 9 28 28 H 1.08993 * 109.46955 * 60.00103 * 11 10 9 29 29 H 1.09001 * 109.47289 * 299.99953 * 12 11 10 30 30 H 1.09004 * 109.47261 * 59.99697 * 12 11 10 31 31 H 1.09004 * 108.94957 * 300.03001 * 14 13 12 32 32 H 1.08998 * 108.94996 * 58.65883 * 14 13 12 33 33 H 1.08999 * 110.01989 * 296.50021 * 15 14 13 34 34 H 1.09006 * 110.10219 * 175.10603 * 15 14 13 35 35 H 1.09007 * 110.14057 * 25.45104 * 18 16 15 36 36 H 1.09000 * 110.19555 * 263.76566 * 18 16 15 37 37 H 1.08999 * 110.60406 * 216.83194 * 20 19 18 38 38 H 1.08997 * 110.73774 * 93.93822 * 20 19 18 39 39 H 1.09000 * 110.01032 * 304.10866 * 23 13 12 40 40 H 1.09006 * 110.00587 * 65.42355 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8917 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9792 -5.3243 -0.0001 12 6 3.1513 -6.3077 0.0005 13 7 2.6361 -7.6834 0.0005 14 6 1.8530 -7.9500 1.2068 15 6 1.2865 -9.3815 1.2259 16 6 2.4661 -10.3163 1.0670 17 1 3.2097 -10.1269 1.8410 18 6 2.1978 -11.8098 0.9592 19 8 3.1858 -12.3276 0.0383 20 6 3.9870 -11.2358 -0.4820 21 6 3.0724 -10.0197 -0.3390 22 1 2.3082 -10.0219 -1.1162 23 6 3.7231 -8.6561 -0.2386 24 1 -0.4850 0.8401 -0.0004 25 1 3.1244 -3.7314 0.8906 26 1 3.1245 -3.7313 -0.8894 27 1 1.3704 -5.4847 0.8897 28 1 1.3709 -5.4840 -0.8903 29 1 3.7605 -6.1475 -0.8890 30 1 3.7593 -6.1478 0.8910 31 1 2.4896 -7.8095 2.0804 32 1 1.0262 -7.2414 1.2559 33 1 0.5886 -9.5177 0.3999 34 1 0.7838 -9.5729 2.1741 35 1 1.1945 -11.9838 0.5702 36 1 2.3092 -12.2835 1.9345 37 1 4.2355 -11.4077 -1.5293 38 1 4.8931 -11.1059 0.1097 39 1 4.2377 -8.4190 -1.1697 40 1 4.4288 -8.6384 0.5921 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595828963.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:59 Heat of formation + Delta-G solvation = -76.035574 kcal Electronic energy + Delta-G solvation = -18533.588944 eV Core-core repulsion = 15665.884933 eV Total energy + Delta-G solvation = -2867.704010 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.41481 -38.67562 -35.48676 -34.60586 -33.09538 -32.32530 -29.26486 -27.94820 -27.15794 -25.04528 -23.71411 -22.36869 -21.61135 -21.10196 -19.55813 -17.23062 -17.07046 -16.90241 -16.56711 -16.48594 -16.07870 -15.82607 -15.74450 -14.93619 -14.76265 -14.36439 -14.13190 -13.81524 -13.56483 -13.49518 -13.10439 -13.05978 -12.90579 -12.58841 -12.39032 -12.17916 -12.12474 -11.89865 -11.76109 -11.48758 -11.25094 -11.14949 -11.05569 -10.53487 -10.31560 -9.23537 -8.66939 -8.37905 -6.14078 1.31362 1.38075 1.49253 1.74140 2.27756 2.73623 2.89509 2.96379 3.24505 3.32256 3.67572 3.80276 3.99755 4.06025 4.16879 4.27658 4.30629 4.36795 4.37454 4.45498 4.47840 4.54254 4.65768 4.70636 4.76376 4.80304 4.83813 4.88613 4.92712 4.96318 5.10293 5.13415 5.19107 5.30178 5.37909 5.39587 5.86433 6.07098 6.17927 6.20346 7.04472 8.71774 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.059845 B = 0.002845 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.764501 B = 9838.896131 C =10125.954457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.014 3.986 3 Si 0.995 3.005 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.199 6.199 10 C -0.087 4.087 11 C -0.083 4.083 12 C 0.077 3.923 13 N -0.560 5.560 14 C 0.057 3.943 15 C -0.095 4.095 16 C -0.127 4.127 17 H 0.080 0.920 18 C 0.059 3.941 19 O -0.412 6.412 20 C 0.061 3.939 21 C -0.122 4.122 22 H 0.088 0.912 23 C 0.079 3.921 24 H 0.271 0.729 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.035 0.965 31 H 0.029 0.971 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.681 -21.529 1.843 22.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.191 4.191 3 Si 0.817 3.183 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.030 5.970 10 C -0.237 4.237 11 C -0.122 4.122 12 C -0.052 4.052 13 N -0.285 5.285 14 C -0.071 4.071 15 C -0.132 4.132 16 C -0.146 4.146 17 H 0.098 0.902 18 C -0.017 4.017 19 O -0.333 6.333 20 C -0.015 4.015 21 C -0.141 4.141 22 H 0.106 0.894 23 C -0.048 4.048 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.115 -21.873 1.433 22.757 hybrid contribution 1.950 1.746 0.724 2.716 sum 8.066 -20.126 2.157 21.789 Atomic orbital electron populations 1.70167 1.07688 1.28480 1.48088 1.26082 0.96053 1.03156 0.93795 0.84955 0.78426 0.76620 0.78297 1.18636 1.19661 1.19678 1.23069 0.94709 0.91992 1.58702 0.90945 1.84650 1.14147 1.01210 1.97024 1.23159 1.00103 0.97560 1.02874 1.21195 0.98049 0.90311 1.02609 1.21916 0.95490 0.86574 1.01244 1.60956 1.26026 1.02244 1.39274 1.22086 0.97402 0.97757 0.89848 1.21289 0.96546 0.92070 1.03319 1.22380 0.99587 0.94827 0.97803 0.90200 1.22798 0.92527 0.92584 0.93750 1.88904 1.49094 1.32826 1.62446 1.23078 0.93427 0.84743 1.00293 1.22532 0.99407 0.94286 0.97850 0.89415 1.21709 0.91561 0.90061 1.01495 0.91967 0.92101 0.91822 0.91874 0.91627 0.89951 0.94675 0.95311 0.90917 0.90914 0.89437 0.90810 0.89920 0.88419 0.91104 0.89431 0.94008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.99 13.22 21.65 0.29 -54.71 16 2 C 0.01 0.80 5.49 84.86 0.47 1.26 16 3 Si 1.00 43.97 29.55 68.60 2.03 45.99 16 4 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.54 -31.13 9.50 67.95 0.65 -30.49 16 8 H 0.07 4.05 7.80 -2.91 -0.02 4.03 16 9 S -0.20 -10.64 21.44 -56.49 -1.21 -11.85 16 10 C -0.09 -3.49 5.67 71.98 0.41 -3.08 16 11 C -0.08 -2.63 5.03 30.60 0.15 -2.48 16 12 C 0.08 1.90 5.01 86.30 0.43 2.34 16 13 N -0.56 -12.28 4.54 -896.58 -4.07 -16.35 16 14 C 0.06 1.17 5.15 86.75 0.45 1.62 16 15 C -0.09 -1.54 5.88 30.38 0.18 -1.36 16 16 C -0.13 -1.96 2.36 -10.60 -0.02 -1.98 16 17 H 0.08 1.23 7.94 -2.39 -0.02 1.22 16 18 C 0.06 0.92 7.53 71.69 0.54 1.46 16 19 O -0.41 -8.13 11.48 -148.98 -1.71 -9.84 16 20 C 0.06 0.93 7.45 71.93 0.54 1.46 16 21 C -0.12 -1.97 2.63 -10.34 -0.03 -2.00 16 22 H 0.09 1.64 8.07 -2.39 -0.02 1.62 16 23 C 0.08 1.37 5.33 85.61 0.46 1.82 16 24 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 25 H 0.06 2.38 8.14 -2.39 -0.02 2.37 16 26 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.06 2.04 6.41 -2.39 -0.02 2.02 16 28 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.08 1.93 8.04 -2.39 -0.02 1.91 16 30 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.07 1.70 6.23 -2.39 -0.01 1.68 16 33 H 0.07 1.26 8.07 -2.39 -0.02 1.24 16 34 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.07 1.07 8.10 -2.38 -0.02 1.06 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 1.40 8.08 -2.39 -0.02 1.38 16 40 H 0.04 0.70 7.98 -2.38 -0.02 0.68 16 Total: -1.00 -66.68 326.92 0.52 -66.16 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.99 Total: 12.03 kcal Atomic # 6 Polarization: -35.64 SS G_CDS: 4.21 Total: -31.43 kcal Atomic # 7 Polarization: -67.27 SS G_CDS: -3.79 Total: -71.06 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -1.71 Total: -9.84 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -10.64 SS G_CDS: -1.21 Total: -11.85 kcal Total: -66.68 0.52 -66.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595828963.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.875 kcal (2) G-P(sol) polarization free energy of solvation -66.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds