Wall clock time and date at job start Mon Mar 30 2020 04:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34947 * 126.03468 * 2 1 4 4 C 1.35321 * 107.74574 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.04354 * 180.26586 * 4 3 2 6 6 N 1.46901 * 109.47323 * 102.35786 * 5 4 3 7 7 C 1.47490 * 110.99848 * 263.44796 * 6 5 4 8 8 C 1.53513 * 87.93001 * 221.29750 * 7 6 5 9 9 C 1.50696 * 114.34083 * 139.68360 * 8 7 6 10 10 H 1.07996 * 120.00638 * 266.07392 * 9 8 7 11 11 C 1.37883 * 119.99563 * 86.07816 * 9 8 7 12 12 N 1.31511 * 120.00332 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99680 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47303 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47326 * 120.00017 * 13 11 9 16 16 H 1.48506 * 109.46693 * 239.99972 * 13 11 9 17 17 C 1.47475 * 110.99742 * 167.48024 * 6 5 4 18 18 C 1.39873 * 107.91740 * 359.97438 * 4 3 2 19 19 C 1.50703 * 125.89709 * 180.02562 * 18 4 3 20 20 F 1.39893 * 109.47128 * 302.04290 * 19 18 4 21 21 F 1.39904 * 109.46493 * 62.04433 * 19 18 4 22 22 N 1.30840 * 108.20106 * 0.02562 * 18 4 3 23 23 H 1.09000 * 109.47428 * 269.95599 * 1 2 3 24 24 H 1.08996 * 109.46999 * 29.95331 * 1 2 3 25 25 H 1.09005 * 109.47171 * 149.95099 * 1 2 3 26 26 H 1.08001 * 126.13096 * 0.03501 * 3 2 1 27 27 H 1.08992 * 109.47177 * 222.36422 * 5 4 3 28 28 H 1.09010 * 109.46879 * 342.35852 * 5 4 3 29 29 H 1.09002 * 113.47628 * 336.06657 * 7 6 5 30 30 H 1.09004 * 113.47094 * 106.52963 * 7 6 5 31 31 H 1.09000 * 114.17063 * 272.37817 * 8 7 6 32 32 H 0.96999 * 120.00125 * 180.02562 * 12 11 9 33 33 H 1.09004 * 113.47623 * 253.46656 * 17 6 5 34 34 H 1.08998 * 113.48302 * 23.87609 * 17 6 5 35 35 H 1.09001 * 109.47129 * 182.04012 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7680 1.5453 0.0049 6 7 5.3372 1.5837 1.3586 7 6 4.8764 2.7775 2.0920 8 6 6.3051 2.9280 2.6331 9 6 6.8013 4.3498 2.6895 10 1 7.3718 4.7557 1.8673 11 6 6.5269 5.1325 3.7910 12 7 5.8318 4.6384 4.7921 13 14 7.1414 6.8952 3.8606 14 1 7.8923 7.2071 2.6180 15 1 5.9848 7.8181 3.9854 16 1 8.0363 7.0614 5.0341 17 6 6.6861 2.1798 1.3479 18 6 3.5346 -0.7321 -0.0003 19 6 4.7497 -1.6236 -0.0003 20 9 5.5396 -1.3355 -1.1183 21 9 5.4914 -1.4006 1.1648 22 7 2.2891 -1.1327 -0.0002 23 1 -0.3634 -0.0008 1.0276 24 1 -0.3633 0.8904 -0.5131 25 1 -0.3634 -0.8896 -0.5146 26 1 1.9281 2.1194 0.0005 27 1 5.5066 1.1435 -0.6886 28 1 4.4924 2.5543 -0.3022 29 1 4.5702 3.5960 1.4405 30 1 4.1405 2.5550 2.8648 31 1 6.4968 2.3686 3.5488 32 1 5.6385 5.1892 5.5668 33 1 7.4840 1.4509 1.4902 34 1 6.8633 2.8381 0.4975 35 1 4.4351 -2.6666 -0.0367 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597203755.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:45 Heat of formation + Delta-G solvation = 18.552629 kcal Electronic energy + Delta-G solvation = -20963.817449 eV Core-core repulsion = 17442.834361 eV Total energy + Delta-G solvation = -3520.983088 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.70626 -46.69306 -41.27656 -38.68637 -33.92207 -32.73294 -31.46859 -29.05282 -27.89821 -25.88037 -24.67678 -24.43143 -22.23647 -20.98285 -19.86882 -18.49944 -17.12199 -17.00022 -16.95801 -16.48614 -15.81199 -15.50418 -14.75276 -14.44903 -14.00370 -13.86582 -13.55377 -13.38444 -13.08455 -13.03204 -12.74507 -12.61874 -12.42485 -11.87646 -11.56650 -11.27717 -11.03475 -10.95673 -10.74785 -10.50284 -10.15398 -9.70803 -9.52069 -9.24643 -8.87036 -8.43470 -8.26993 -7.84231 -6.01572 -4.05675 1.72218 2.27514 2.59207 3.29338 3.37730 3.41532 3.80823 4.22220 4.43119 4.55271 4.71392 4.93552 4.96014 5.15626 5.18764 5.26382 5.26694 5.37245 5.55729 5.85365 5.97883 6.06992 6.29064 6.40444 6.47713 6.56620 6.80219 6.83968 6.92114 7.21720 7.31942 7.50802 7.79025 7.97684 8.19811 8.43711 8.98252 9.58990 11.08016 Molecular weight = 271.12amu Principal moments of inertia in cm(-1) A = 0.023405 B = 0.004932 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.053113 B = 5675.731645 C = 6409.142643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.368 5.368 3 C 0.056 3.944 4 C -0.174 4.174 5 C 0.088 3.912 6 N -0.471 5.471 7 C 0.007 3.993 8 C 0.041 3.959 9 C -0.513 4.513 10 H 0.058 0.942 11 C 0.066 3.934 12 N -0.887 5.887 13 Si 0.889 3.111 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.283 1.283 17 C -0.003 4.003 18 C 0.012 3.988 19 C 0.361 3.639 20 F -0.195 7.195 21 F -0.173 7.173 22 N -0.272 5.272 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.178 0.822 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.260 0.740 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.536 -9.595 -10.990 17.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.151 5.151 3 C -0.090 4.090 4 C -0.186 4.186 5 C -0.042 4.042 6 N -0.193 5.193 7 C -0.122 4.122 8 C 0.022 3.978 9 C -0.552 4.552 10 H 0.076 0.924 11 C -0.136 4.136 12 N -0.524 5.524 13 Si 0.717 3.283 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.209 1.209 17 C -0.132 4.132 18 C -0.155 4.155 19 C 0.305 3.695 20 F -0.176 7.176 21 F -0.154 7.154 22 N -0.096 5.096 23 H 0.095 0.905 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.195 0.805 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.653 -11.214 -10.577 18.738 hybrid contribution 0.644 2.631 -0.286 2.724 sum -10.009 -8.583 -10.863 17.083 Atomic orbital electron populations 1.21887 0.73819 1.04452 1.03646 1.48284 1.06495 1.03487 1.56866 1.22380 0.90435 0.93394 1.02745 1.19864 0.94855 0.92566 1.11269 1.20987 0.92603 0.96277 0.94324 1.68932 1.04626 1.35518 1.10204 1.24083 1.02040 0.89047 0.97056 1.20084 0.90339 0.95037 0.92343 1.21098 1.34477 0.96360 1.03232 0.92395 1.25019 0.94860 0.98328 0.95427 1.69987 1.38860 1.36363 1.07239 0.86586 0.78615 0.84999 0.78084 1.19716 1.21092 1.20941 1.23981 0.91606 0.96795 1.00840 1.22506 0.93411 0.94869 1.04702 1.19113 0.80767 0.97418 0.72220 1.92995 1.76097 1.95433 1.53115 1.93133 1.77823 1.96273 1.48180 1.77090 1.00346 1.08650 1.23548 0.90498 0.89257 0.89308 0.80509 0.90900 0.93344 0.93127 0.92225 0.91872 0.93012 0.91966 0.92978 0.86473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.78 11.47 59.85 0.69 1.47 16 2 N -0.37 -4.76 4.01 -68.16 -0.27 -5.04 16 3 C 0.06 0.78 11.40 -17.22 -0.20 0.58 16 4 C -0.17 -2.86 5.68 -105.05 -0.60 -3.46 16 5 C 0.09 1.56 5.12 -4.98 -0.03 1.53 16 6 N -0.47 -9.88 6.20 -246.07 -1.52 -11.41 16 7 C 0.01 0.16 7.28 -7.54 -0.05 0.10 16 8 C 0.04 1.05 3.76 -91.24 -0.34 0.71 16 9 C -0.51 -14.07 8.83 -34.44 -0.30 -14.37 16 10 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 11 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 12 N -0.89 -25.81 13.26 55.43 0.74 -25.07 16 13 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 14 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 17 C 0.00 -0.08 7.22 -7.55 -0.05 -0.13 16 18 C 0.01 0.19 6.65 -82.40 -0.55 -0.36 16 19 C 0.36 5.23 5.56 36.01 0.20 5.43 16 20 F -0.20 -2.92 16.69 2.25 0.04 -2.88 16 21 F -0.17 -3.01 17.20 2.25 0.04 -2.97 16 22 N -0.27 -4.12 12.58 33.67 0.42 -3.70 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.18 1.95 8.06 -52.49 -0.42 1.53 16 27 H 0.07 1.27 7.40 -51.93 -0.38 0.89 16 28 H 0.05 0.83 7.25 -51.92 -0.38 0.45 16 29 H 0.05 1.15 7.36 -51.93 -0.38 0.77 16 30 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.06 1.79 8.11 -51.93 -0.42 1.37 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.05 1.10 7.87 -51.93 -0.41 0.69 16 35 H 0.12 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 310.26 15.07 4.68 4.68 Total: -1.00 -32.18 310.26 -6.72 -38.90 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.48 Total: -1.79 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -1.33 Total: -6.77 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: -0.64 Total: -45.22 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.08 Total: -5.85 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.18 -6.72 -38.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597203755.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.448 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds