Wall clock time and date at job start Mon Mar 30 2020 04:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34947 * 126.03468 * 2 1 4 4 C 1.35321 * 107.74574 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.04354 * 180.26586 * 4 3 2 6 6 N 1.46901 * 109.47323 * 102.35786 * 5 4 3 7 7 C 1.47490 * 110.99848 * 263.44796 * 6 5 4 8 8 C 1.53513 * 87.93001 * 221.29750 * 7 6 5 9 9 C 1.50696 * 114.34083 * 139.68360 * 8 7 6 10 10 H 1.07996 * 120.00638 * 266.07392 * 9 8 7 11 11 C 1.37883 * 119.99563 * 86.07816 * 9 8 7 12 12 N 1.31511 * 120.00332 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99680 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47303 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47326 * 120.00017 * 13 11 9 16 16 H 1.48506 * 109.46693 * 239.99972 * 13 11 9 17 17 C 1.47475 * 110.99742 * 167.48024 * 6 5 4 18 18 C 1.39873 * 107.91740 * 359.97438 * 4 3 2 19 19 C 1.50703 * 125.89709 * 180.02562 * 18 4 3 20 20 F 1.39893 * 109.47128 * 302.04290 * 19 18 4 21 21 F 1.39904 * 109.46493 * 62.04433 * 19 18 4 22 22 N 1.30840 * 108.20106 * 0.02562 * 18 4 3 23 23 H 1.09000 * 109.47428 * 269.95599 * 1 2 3 24 24 H 1.08996 * 109.46999 * 29.95331 * 1 2 3 25 25 H 1.09005 * 109.47171 * 149.95099 * 1 2 3 26 26 H 1.08001 * 126.13096 * 0.03501 * 3 2 1 27 27 H 1.08992 * 109.47177 * 222.36422 * 5 4 3 28 28 H 1.09010 * 109.46879 * 342.35852 * 5 4 3 29 29 H 1.09002 * 113.47628 * 336.06657 * 7 6 5 30 30 H 1.09004 * 113.47094 * 106.52963 * 7 6 5 31 31 H 1.09000 * 114.17063 * 272.37817 * 8 7 6 32 32 H 0.96999 * 120.00125 * 180.02562 * 12 11 9 33 33 H 1.09004 * 113.47623 * 253.46656 * 17 6 5 34 34 H 1.08998 * 113.48302 * 23.87609 * 17 6 5 35 35 H 1.09001 * 109.47129 * 182.04012 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7680 1.5453 0.0049 6 7 5.3372 1.5837 1.3586 7 6 4.8764 2.7775 2.0920 8 6 6.3051 2.9280 2.6331 9 6 6.8013 4.3498 2.6895 10 1 7.3718 4.7557 1.8673 11 6 6.5269 5.1325 3.7910 12 7 5.8318 4.6384 4.7921 13 14 7.1414 6.8952 3.8606 14 1 7.8923 7.2071 2.6180 15 1 5.9848 7.8181 3.9854 16 1 8.0363 7.0614 5.0341 17 6 6.6861 2.1798 1.3479 18 6 3.5346 -0.7321 -0.0003 19 6 4.7497 -1.6236 -0.0003 20 9 5.5396 -1.3355 -1.1183 21 9 5.4914 -1.4006 1.1648 22 7 2.2891 -1.1327 -0.0002 23 1 -0.3634 -0.0008 1.0276 24 1 -0.3633 0.8904 -0.5131 25 1 -0.3634 -0.8896 -0.5146 26 1 1.9281 2.1194 0.0005 27 1 5.5066 1.1435 -0.6886 28 1 4.4924 2.5543 -0.3022 29 1 4.5702 3.5960 1.4405 30 1 4.1405 2.5550 2.8648 31 1 6.4968 2.3686 3.5488 32 1 5.6385 5.1892 5.5668 33 1 7.4840 1.4509 1.4902 34 1 6.8633 2.8381 0.4975 35 1 4.4351 -2.6666 -0.0367 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597203755.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:44 Heat of formation + Delta-G solvation = -3.671254 kcal Electronic energy + Delta-G solvation = -20964.781149 eV Core-core repulsion = 17442.834361 eV Total energy + Delta-G solvation = -3521.946788 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.88482 -47.89902 -42.36610 -40.45179 -35.10691 -34.53130 -32.88452 -30.29674 -29.18142 -27.47132 -26.47603 -25.74971 -23.81469 -22.08111 -21.04819 -20.39396 -18.67354 -18.17605 -18.09866 -18.04000 -16.87778 -16.73460 -16.41761 -16.19583 -15.64280 -15.28671 -14.77710 -14.61271 -14.29222 -14.26544 -13.88940 -13.81010 -13.51535 -13.43308 -13.23136 -12.96974 -12.85758 -12.39777 -12.29194 -12.14730 -11.71078 -11.51136 -11.15558 -10.84714 -10.54753 -10.48339 -9.62119 -9.43302 -8.12281 -6.23777 0.65392 1.35893 1.41395 1.43312 1.45541 1.57271 2.44864 2.75631 3.17010 3.20602 3.45451 3.59623 3.91097 3.94745 4.10067 4.11836 4.30608 4.41792 4.43555 4.53015 4.60623 4.67721 4.70189 4.85472 4.93389 4.95103 5.01618 5.25979 5.28013 5.61388 5.66340 5.88374 5.96599 6.33296 6.40666 6.49222 6.86221 7.44754 8.97820 Molecular weight = 271.12amu Principal moments of inertia in cm(-1) A = 0.023405 B = 0.004932 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.053113 B = 5675.731645 C = 6409.142643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.362 5.362 3 C 0.066 3.934 4 C -0.212 4.212 5 C 0.094 3.906 6 N -0.472 5.472 7 C 0.024 3.976 8 C 0.022 3.978 9 C -0.527 4.527 10 H 0.061 0.939 11 C 0.015 3.985 12 N -0.924 5.924 13 Si 0.959 3.041 14 H -0.263 1.263 15 H -0.279 1.279 16 H -0.282 1.282 17 C 0.011 3.989 18 C -0.004 4.004 19 C 0.355 3.645 20 F -0.200 7.200 21 F -0.194 7.194 22 N -0.286 5.286 23 H 0.086 0.914 24 H 0.120 0.880 25 H 0.101 0.899 26 H 0.206 0.794 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.039 0.961 31 H 0.024 0.976 32 H 0.262 0.738 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.706 -8.977 -12.371 18.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.145 5.145 3 C -0.081 4.081 4 C -0.224 4.224 5 C -0.035 4.035 6 N -0.195 5.195 7 C -0.105 4.105 8 C 0.002 3.998 9 C -0.565 4.565 10 H 0.079 0.921 11 C -0.184 4.184 12 N -0.563 5.563 13 Si 0.784 3.216 14 H -0.187 1.187 15 H -0.205 1.205 16 H -0.208 1.208 17 C -0.118 4.118 18 C -0.170 4.170 19 C 0.300 3.700 20 F -0.181 7.181 21 F -0.176 7.176 22 N -0.111 5.111 23 H 0.104 0.896 24 H 0.138 0.862 25 H 0.119 0.881 26 H 0.223 0.777 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.838 -10.619 -11.978 19.909 hybrid contribution 0.908 2.382 0.122 2.552 sum -10.930 -8.237 -11.857 18.108 Atomic orbital electron populations 1.22351 0.70777 1.06690 1.04963 1.48747 1.08124 1.02631 1.54953 1.22788 0.89866 0.94779 1.00653 1.19892 0.95333 0.92870 1.14298 1.20895 0.93363 0.97224 0.92014 1.68883 1.03917 1.34094 1.12556 1.23784 0.99792 0.90137 0.96786 1.20015 0.92761 0.94521 0.92460 1.21406 1.34399 0.97215 1.03471 0.92116 1.25837 0.94988 1.02619 0.95004 1.70118 1.40225 1.38054 1.07921 0.85496 0.78128 0.79703 0.78254 1.18711 1.20487 1.20799 1.23804 0.92406 0.96496 0.99113 1.22684 0.94067 0.94993 1.05228 1.19541 0.80087 0.99207 0.71203 1.92975 1.76281 1.95618 1.53246 1.93083 1.78425 1.96521 1.49531 1.77033 1.00256 1.09841 1.23956 0.89562 0.86158 0.88067 0.77742 0.90814 0.92450 0.92539 0.94280 0.95785 0.92923 0.91663 0.91816 0.82738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.09 11.47 127.77 1.47 2.56 16 2 N -0.36 -8.47 4.01 -369.56 -1.48 -9.95 16 3 C 0.07 1.69 11.40 83.54 0.95 2.64 16 4 C -0.21 -6.72 5.68 -20.14 -0.11 -6.83 16 5 C 0.09 3.26 5.12 85.56 0.44 3.69 16 6 N -0.47 -19.81 6.20 -932.44 -5.78 -25.58 16 7 C 0.02 1.14 7.28 83.57 0.61 1.75 16 8 C 0.02 1.13 3.76 -11.20 -0.04 1.09 16 9 C -0.53 -29.03 8.83 25.60 0.23 -28.81 16 10 H 0.06 3.24 7.81 -2.91 -0.02 3.21 16 11 C 0.01 0.81 5.46 84.66 0.46 1.27 16 12 N -0.92 -54.72 13.26 21.45 0.28 -54.43 16 13 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 14 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 15 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 C 0.01 0.46 7.22 83.58 0.60 1.07 16 18 C 0.00 -0.12 6.65 43.10 0.29 0.16 16 19 C 0.36 10.02 5.56 71.24 0.40 10.41 16 20 F -0.20 -5.85 16.69 44.97 0.75 -5.10 16 21 F -0.19 -6.78 17.20 44.97 0.77 -6.00 16 22 N -0.29 -8.19 12.58 -47.38 -0.60 -8.79 16 23 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.12 0.72 8.14 -2.39 -0.02 0.71 16 25 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.21 3.86 8.06 -2.91 -0.02 3.84 16 27 H 0.07 2.51 7.40 -2.39 -0.02 2.49 16 28 H 0.06 1.86 7.25 -2.38 -0.02 1.85 16 29 H 0.06 2.55 7.36 -2.39 -0.02 2.53 16 30 H 0.04 1.95 8.14 -2.38 -0.02 1.94 16 31 H 0.02 1.43 8.11 -2.39 -0.02 1.41 16 32 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 33 H 0.06 2.78 8.14 -2.39 -0.02 2.77 16 34 H 0.06 2.63 7.87 -2.39 -0.02 2.61 16 35 H 0.16 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -69.87 310.26 2.36 -67.51 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 1.10 Total: 8.16 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 5.28 Total: -11.00 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -7.57 Total: -98.76 kcal Atomic # 9 Polarization: -12.63 SS G_CDS: 1.52 Total: -11.10 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -69.87 2.36 -67.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597203755.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.843 kcal (2) G-P(sol) polarization free energy of solvation -69.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds