Wall clock time and date at job start Mon Mar 30 2020 04:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99862 * 2 1 4 4 C 1.52998 * 109.47134 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47068 * 65.00282 * 4 3 2 6 6 C 1.37103 * 119.99928 * 93.21405 * 5 4 3 7 7 H 1.08005 * 119.99568 * 216.98080 * 6 5 4 8 8 C 1.38942 * 120.00134 * 37.25401 * 6 5 4 9 9 N 1.31420 * 120.00094 * 213.20685 * 8 6 5 10 10 Si 1.86802 * 120.00298 * 33.20524 * 8 6 5 11 11 H 1.48499 * 109.47229 * 86.42325 * 10 8 6 12 12 H 1.48498 * 109.47268 * 206.42767 * 10 8 6 13 13 H 1.48508 * 109.46725 * 326.42488 * 10 8 6 14 14 C 1.34775 * 120.00063 * 273.21791 * 5 4 3 15 15 O 1.21290 * 119.99767 * 4.96984 * 14 5 4 16 16 C 1.50697 * 119.99985 * 184.98027 * 14 5 4 17 17 H 1.08997 * 110.49191 * 322.84201 * 16 14 5 18 18 C 1.54104 * 110.55161 * 85.54731 * 16 14 5 19 19 N 1.47053 * 103.86362 * 118.59345 * 18 16 14 20 20 C 1.46501 * 125.41021 * 179.97438 * 19 18 16 21 21 C 1.33947 * 109.17921 * 359.97438 * 19 18 16 22 22 O 1.21592 * 123.03989 * 179.97438 * 21 19 18 23 23 N 1.33945 * 113.91735 * 0.02562 * 21 19 18 24 24 H 1.08997 * 109.47090 * 60.00372 * 1 2 3 25 25 H 1.09000 * 109.46476 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46949 * 299.99648 * 1 2 3 27 27 H 1.09006 * 109.46771 * 60.00061 * 3 2 1 28 28 H 1.09001 * 109.47204 * 300.00513 * 3 2 1 29 29 H 1.08996 * 109.47453 * 305.00098 * 4 3 2 30 30 H 1.09001 * 109.46822 * 184.99747 * 4 3 2 31 31 H 0.97000 * 119.99906 * 180.02562 * 9 8 6 32 32 H 1.09002 * 110.54762 * 237.18965 * 18 16 14 33 33 H 1.09003 * 110.54799 * 359.97438 * 18 16 14 34 34 H 1.09004 * 109.47040 * 89.99827 * 20 19 18 35 35 H 1.08997 * 109.47305 * 209.99974 * 20 19 18 36 36 H 1.08999 * 109.47139 * 330.00197 * 20 19 18 37 37 H 0.96995 * 125.41281 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.3314 1.3491 -2.3175 7 1 4.0875 1.0371 -3.3223 8 6 5.0098 2.5431 -2.1061 9 7 4.8028 3.5666 -2.9041 10 14 6.2160 2.6937 -0.6877 11 1 7.5520 2.2113 -1.1207 12 1 6.3143 4.1154 -0.2703 13 1 5.7403 1.8739 0.4556 14 6 4.0338 -0.7785 -1.3538 15 8 3.6351 -1.4740 -0.4436 16 6 4.5931 -1.4156 -2.5997 17 1 4.3059 -0.8443 -3.4824 18 6 6.1270 -1.5317 -2.5060 19 7 6.3758 -2.9792 -2.5776 20 6 7.6937 -3.6174 -2.5303 21 6 5.2061 -3.6216 -2.6928 22 8 5.1194 -4.8318 -2.7724 23 7 4.1406 -2.8101 -2.7137 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6885 1.8464 0.8901 28 1 1.6885 1.8465 -0.8899 29 1 3.8508 0.5686 0.8426 30 1 3.9783 2.1767 0.0902 31 1 5.2767 4.4000 -2.7567 32 1 6.6012 -1.0200 -3.3435 33 1 6.4840 -1.1281 -1.5585 34 1 7.9537 -3.8377 -1.4949 35 1 7.6695 -4.5439 -3.1039 36 1 8.4383 -2.9453 -2.9568 37 1 3.2172 -3.0968 -2.7910 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597755698.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:48 Heat of formation + Delta-G solvation = -67.522562 kcal Electronic energy + Delta-G solvation = -22225.446388 eV Core-core repulsion = 18811.818315 eV Total energy + Delta-G solvation = -3413.628073 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.76291 -38.69188 -37.06214 -35.70160 -34.90787 -33.62040 -32.17162 -30.03516 -28.44569 -26.81330 -25.82931 -24.93839 -23.48870 -21.93312 -20.10847 -19.28237 -17.64713 -17.04014 -16.59718 -15.94782 -15.67993 -15.54015 -15.11345 -14.75438 -14.54382 -14.05025 -13.97486 -13.50412 -13.35029 -13.06149 -12.85504 -12.50656 -12.17879 -12.12829 -11.90611 -11.85533 -11.40363 -11.21260 -11.00371 -10.58156 -10.51011 -10.00064 -9.82980 -9.39934 -9.10596 -9.06405 -8.59318 -8.06751 -7.86050 -6.72348 -4.18876 2.93540 2.98738 3.11037 3.16871 3.53975 3.61803 3.96150 4.08208 4.37476 4.50728 4.71441 5.03298 5.17751 5.45421 5.56791 5.65598 5.69551 5.74084 5.83355 5.88054 5.88561 5.90326 5.97593 5.98036 6.19190 6.23358 6.28508 6.56617 7.01984 7.19107 7.54651 7.73811 7.87093 7.91938 8.11516 8.82887 9.01049 9.24458 9.62779 10.38101 Molecular weight = 271.14amu Principal moments of inertia in cm(-1) A = 0.015102 B = 0.008512 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.674489 B = 3288.657038 C = 4590.576942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.363 6.363 3 C 0.049 3.951 4 C 0.119 3.881 5 N -0.454 5.454 6 C -0.365 4.365 7 H 0.102 0.898 8 C 0.080 3.920 9 N -0.836 5.836 10 Si 0.847 3.153 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.254 1.254 14 C 0.470 3.530 15 O -0.559 6.559 16 C 0.121 3.879 17 H 0.115 0.885 18 C 0.118 3.882 19 N -0.641 5.641 20 C 0.125 3.875 21 C 0.706 3.294 22 O -0.602 6.602 23 N -0.715 5.715 24 H 0.034 0.966 25 H 0.077 0.923 26 H 0.030 0.970 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.277 0.723 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.845 -1.856 1.289 2.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C -0.029 4.029 4 C -0.005 4.005 5 N -0.176 5.176 6 C -0.491 4.491 7 H 0.120 0.880 8 C -0.131 4.131 9 N -0.468 5.468 10 Si 0.671 3.329 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.178 1.178 14 C 0.256 3.744 15 O -0.440 6.440 16 C 0.011 3.989 17 H 0.132 0.868 18 C -0.006 4.006 19 N -0.380 5.380 20 C -0.018 4.018 21 C 0.406 3.594 22 O -0.482 6.482 23 N -0.374 5.374 24 H 0.052 0.948 25 H 0.096 0.904 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 0.917 -2.808 1.648 3.382 hybrid contribution 0.058 0.908 0.590 1.084 sum 0.974 -1.900 2.238 3.093 Atomic orbital electron populations 1.22641 0.83076 1.01819 0.98971 1.88180 1.17681 1.27115 1.95115 1.22991 0.95278 0.85034 0.99615 1.21714 0.91572 0.98356 0.88860 1.43557 1.57762 1.03877 1.12392 1.18943 1.39263 1.03087 0.87761 0.88043 1.25304 0.96361 0.94531 0.96873 1.69956 1.36501 1.01255 1.39117 0.87505 0.83387 0.78087 0.83945 1.19757 1.20759 1.17838 1.20345 0.82527 0.82986 0.88524 1.90632 1.50431 1.62219 1.40698 1.21705 0.93620 0.83680 0.99859 0.86788 1.22150 0.93657 0.81244 1.03585 1.47032 1.05894 1.07132 1.77953 1.21293 0.80952 0.97957 1.01565 1.15782 0.81400 0.84901 0.77323 1.90888 1.86109 1.11466 1.59781 1.44864 1.08378 1.06060 1.78115 0.94750 0.90420 0.95107 0.94113 0.92498 0.91027 0.89986 0.91317 0.89149 0.90211 0.93101 0.90766 0.91116 0.73065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.26 8.92 -52.65 -0.47 -7.73 16 3 C 0.05 0.92 6.28 37.16 0.23 1.15 16 4 C 0.12 2.45 4.13 -4.04 -0.02 2.44 16 5 N -0.45 -9.89 2.15 -114.81 -0.25 -10.14 16 6 C -0.36 -8.28 8.91 -14.93 -0.13 -8.41 16 7 H 0.10 2.40 6.72 -52.48 -0.35 2.04 16 8 C 0.08 1.84 5.03 -17.47 -0.09 1.75 16 9 N -0.84 -20.54 13.96 55.50 0.77 -19.76 16 10 Si 0.85 17.51 26.50 -169.99 -4.50 13.01 16 11 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 12 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 13 H -0.25 -5.17 5.59 56.52 0.32 -4.86 16 14 C 0.47 10.19 6.38 -10.99 -0.07 10.12 16 15 O -0.56 -13.67 14.93 -11.87 -0.18 -13.84 16 16 C 0.12 2.23 3.45 -68.20 -0.24 2.00 16 17 H 0.11 2.02 6.52 -51.93 -0.34 1.68 16 18 C 0.12 1.96 7.32 -3.16 -0.02 1.94 16 19 N -0.64 -10.89 3.36 -186.73 -0.63 -11.51 16 20 C 0.12 1.62 11.03 59.85 0.66 2.28 16 21 C 0.71 13.99 8.60 -88.40 -0.76 13.23 16 22 O -0.60 -13.59 17.53 5.28 0.09 -13.50 16 23 N -0.71 -13.30 5.64 -59.33 -0.33 -13.64 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.07 1.52 7.60 -51.93 -0.39 1.13 16 30 H 0.08 1.65 4.40 -51.93 -0.23 1.43 16 31 H 0.28 6.38 8.31 -40.82 -0.34 6.04 16 32 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.08 1.38 7.72 -51.93 -0.40 0.98 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.96 7.91 -51.93 -0.41 0.55 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.43 7.48 8.96 -40.82 -0.37 7.11 16 LS Contribution 308.20 15.07 4.64 4.64 Total: -1.00 -30.67 308.20 -5.26 -35.93 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -5.09 Total: 8.45 kcal Atomic # 6 Polarization: 27.42 SS G_CDS: 0.68 Total: 28.10 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.43 Total: -55.06 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -0.55 Total: -35.07 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -4.50 Total: 13.01 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.67 -5.26 -35.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755698.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.588 kcal (2) G-P(sol) polarization free energy of solvation -30.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds